mRNA_H-paniculata_contig27249.7451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27249.7451.1
Unique NamemRNA_H-paniculata_contig27249.7451.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: D7FKI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI2_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.570e-52
Identity = 92/140 (65.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIAIAGAVL 420
            EEG+ G  APLV+WLLAFS A LWNV YA YLLS   TW RY      D+      +TVMS+FFVGHIH YG +Q LFG LGPVIAWPL+MSSTVL GQ+W V+MKEW GVP  A+ +NVASI LLV AV IIA+AGAVL
Sbjct:  162 EEGVSGAAAPLVVWLLAFSLAALWNVAYAVYLLSKNETWARYTWVGWSDVARKFRNITVMSLFFVGHIHFYGQSQHLFGDLGPVIAWPLIMSSTVLSGQIWSVFMKEWAGVPPLAMKVNVASICLLVAAVSIIAVAGAVL 301          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A6H5KJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ20_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.800e-52
Identity = 93/140 (66.43%), Postives = 105/140 (75.00%), Query Frame = 1
Query:    1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIAIAGAVL 420
            EEG+ G  APLV+WLLAFS A LWNV YA YLLS   TW RY      D+   S  +TVMS+FFVGHIH YG +Q LFG LGPV+AWPL+MSSTVL GQ+W V+MKEW GVP  A+ +NVASI LLV AV IIAIAGAVL
Sbjct:  281 EEGVSGAAAPLVVWLLAFSLAALWNVAYAVYLLSKNETWARYTWVGWSDVARKSRNITVMSLFFVGHIHFYGQSQHLFGDLGPVVAWPLIMSSTVLSGQIWSVFMKEWAGVPPLAMKVNVASICLLVAAVSIIAIAGAVL 420          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A355J058_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A355J058_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 1.150e-14
Identity = 41/132 (31.06%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVII 396
            + G+  ++A  V+W L F+   L N+ Y  YL+S K T   +++      + + + +  MS  ++G  +LYG    L G LG V+ WPLL+S +++ G +WG++  EW G   Q+  +  A + +L+ AV++
Sbjct:  199 QSGVNSVLAGNVVWSLFFTMGALVNMGYCLYLVSRKSTGKSFVNEYK---IQNWLLILAMSAMWIGSFYLYGFGSTLLGSLGLVVGWPLLVSLSIVVGNVWGIYRGEWKGASAQSRRLINAGLIILIAAVVV 327          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A2V9I738_9BACT (Uncharacterized protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9I738_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 1.200e-9
Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 1
Query:   40 WLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAV 390
            W    +F  L N++ +   LS +  W  Y   +    + H +   +M + ++G   +YG    L G LGPVI WP+ MS+ ++ G  WG  MKEW   P  A+ + ++ I++ V+A+
Sbjct:  221 WAFTVTFGFLPNLLVSLVRLSQENLWPVYRQETA---LSHWLWPPLMGLMWIGGTAIYGSGASLLGPLGPVIGWPVYMSTMIILGNFWGWIMKEWSRAPSVALRLLMSGIAVQVLAI 334          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A1I2JXD4_9BACT (L-rhamnose-H+ transport protein n=1 Tax=Sunxiuqinia elliptica TaxID=655355 RepID=A0A1I2JXD4_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 5.580e-9
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVR----LTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIA 402
            E G+   +A  VIW L F+   L N+ Y  ++L        +++       +H       +  MS  ++G  + YG    + G LG V+ WPLL+S +++ G LWG++  EW G P +A       I +L+ AV+IIA
Sbjct:  197 EHGVGQAMAGNVIWSLFFTAGSLVNMGYCLFVLIKGKELKAFLN-------EHKTMNWGLILGMSAMWIGSFYAYGYGAVVLGDLGLVVGWPLLVSLSIVIGNLWGIFRGEWTGAPQKARKTLNLGILVLIGAVLIIA 327          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A5B9Q7Y8_9BACT (L-rhamnose-proton symporter n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9Q7Y8_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 2.690e-8
Identity = 37/125 (29.60%), Postives = 60/125 (48.00%), Query Frame = 1
Query:   37 IWLLAFSFAGLWNVIYACYLLSSKGTWGRY-MSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIAIA 408
            +W LA S   L +++Y   LL    TW  Y    SG ++        +M   F+     YG+     G LGPVI WP+ +SS ++G   WG    EW   P + + + +  I L V  ++++++A
Sbjct:  212 VWGLACSIGSLPSIVYCATLLRKNSTWTTYRFPGSGWNVA----LCVLMGALFIIATVGYGMGALRMGPLGPVIGWPVYISSLIIGNCFWGWLTGEWQNAPTKLIGLMIVGIFLQVAGIVVLSLA 332          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A5K7S3G6_9BACT (L-rhamnose-proton symporter n=1 Tax=Aquipluma nitroreducens TaxID=2010828 RepID=A0A5K7S3G6_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 3.430e-8
Identity = 33/112 (29.46%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLL----SSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEW 324
              G+  I+A  V+W L FS   + N  Y  +L+    S K  +  + + +        + +  MSV ++G  + YGI   + G  G +I WPLL++ +++ G LWG++  EW
Sbjct:  176 NSGVNSILAGNVVWSLFFSSGAIINAGYCLFLINRTKSIKSFFNEHKAINW-------ILMLAMSVMWIGSFYFYGIGCSMLGDYGLIIGWPLLITLSIVVGNLWGLYRGEW 280          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A4R6GLD8_9BACT (Uncharacterized protein n=1 Tax=Sunxiuqinia elliptica TaxID=655355 RepID=A0A4R6GLD8_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 2.190e-6
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  196 GHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIA 402
            G  + YG    + G LG V+ WPLL+S +++ G LWG++  EW G P +A       I +L+ AV+IIA
Sbjct:    5 GDFYAYGYGAVVLGDLGLVVGWPLLVSLSIVIGNLWGIFRGEWTGAPQKARKTLNLGILVLIGAVLIIA 73          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: UPI00159EB975 (hypothetical protein n=1 Tax=Bacteroides thetaiotaomicron TaxID=818 RepID=UPI00159EB975)

HSP 1 Score: 52.4 bits (124), Expect = 5.970e-6
Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = 1
Query:   58 FAGL-WNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLL 378
            F GL  N  YA +LL    TWG + S   +  +  SV   +    +   + L GI     G LG VI WP+++S +++ G +WG    EW       + + VAS+ L+
Sbjct:    4 FGGLLMNAGYAIFLLCKNKTWGDF-SFKQQGSITASVWAVITGFLWFLPLGLSGIVSVSIGELGNVITWPVMLSLSLIFGNIWGYLTGEWKNTKHSFLLMIVASVILI 110          
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A653AIU1_9BACT (L-rhamnose-H+ transporter n=1 Tax=uncultured Paludibacter sp. TaxID=497635 RepID=A0A653AIU1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.890e-5
Identity = 30/112 (26.79%), Postives = 56/112 (50.00%), Query Frame = 1
Query:   67 LWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLF--GGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVII 396
            L N++Y  Y+     T G    T    ++++ +  T+  + +       G+ Q  F  G +    +W +LMS  V+   +WG+ +KEWVGV   A+   +A + +L+ ++II
Sbjct:  227 LTNLVYCLYMNKKNKTGGEIFKTPTNILINNLLFCTLAGLLWYSQFFGLGMGQSFFETGSVMMAFSWSILMSLNVVFSNVWGIILKEWVGVGKNAIMFLIAGMLVLIFSLII 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FKI2_ECTSI1.570e-5265.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ20_9PHAE3.800e-5266.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A355J058_9BACT1.150e-1431.06Uncharacterized protein n=2 Tax=Bacteroidetes TaxI... [more]
A0A2V9I738_9BACT1.200e-930.77Uncharacterized protein n=3 Tax=Acidobacteria bact... [more]
A0A1I2JXD4_9BACT5.580e-931.16L-rhamnose-H+ transport protein n=1 Tax=Sunxiuqini... [more]
A0A5B9Q7Y8_9BACT2.690e-829.60L-rhamnose-proton symporter n=1 Tax=Bythopirellula... [more]
A0A5K7S3G6_9BACT3.430e-829.46L-rhamnose-proton symporter n=1 Tax=Aquipluma nitr... [more]
A0A4R6GLD8_9BACT2.190e-640.58Uncharacterized protein n=1 Tax=Sunxiuqinia ellipt... [more]
UPI00159EB9755.970e-631.48hypothetical protein n=1 Tax=Bacteroides thetaiota... [more]
A0A653AIU1_9BACT1.890e-526.79L-rhamnose-H+ transporter n=1 Tax=uncultured Palud... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27249contigH-paniculata_contig27249:322..1568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.9e-39
Seed eggNOG ortholog2880.D7FKI2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.pyrimidine nucleotide-sugar transmembrane transport
EggNOG OGs2SCAI@2759,COG0697@1
Ec32 ortholog descriptionL-rhamnose-proton symport, RhaT
Ec32 orthologEc-12_001970.1
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size423
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27249.7451.1prot_H-paniculata_contig27249.7451.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27249 322..1559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.8548877-CDS-H-paniculata_contig27249:321..5761622929820.8548877-CDS-H-paniculata_contig27249:321..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27249 322..576 -
1691481026.1435683-CDS-H-paniculata_contig27249:321..5761691481026.1435683-CDS-H-paniculata_contig27249:321..576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27249 322..576 -
1622929820.872342-CDS-H-paniculata_contig27249:1400..15591622929820.872342-CDS-H-paniculata_contig27249:1400..1559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27249 1401..1559 -
1691481026.1561265-CDS-H-paniculata_contig27249:1400..15591691481026.1561265-CDS-H-paniculata_contig27249:1400..1559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27249 1401..1559 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929820.8857863-UTR-H-paniculata_contig27249:1559..15681622929820.8857863-UTR-H-paniculata_contig27249:1559..1568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27249 1560..1568 -
1691481026.1697745-UTR-H-paniculata_contig27249:1559..15681691481026.1697745-UTR-H-paniculata_contig27249:1559..1568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27249 1560..1568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27249.7451.1

>prot_H-paniculata_contig27249.7451.1 ID=prot_H-paniculata_contig27249.7451.1|Name=mRNA_H-paniculata_contig27249.7451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDH
SVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGV
WMKEWVGVPVQAVCINVASISLLVMAVIIIAIAGAVL*
back to top

mRNA from alignment at H-paniculata_contig27249:322..1568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27249.7451.1 ID=mRNA_H-paniculata_contig27249.7451.1|Name=mRNA_H-paniculata_contig27249.7451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1247bp|location=Sequence derived from alignment at H-paniculata_contig27249:322..1568- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGGGCATGCCGGGCATCGTAGCCCCATTGGTTATATGGCTGCTCGC CTTTTCGTTTGCAGGACTGTGGAACGTGATATACGCGTGTTACCTCTTGT CTTCAAAAGGCACATGGGGTCGCTACATGAGCACTAGCGGTCGAGATATC GTGGACCATTCCGTCCGGGTGAGCCGAAGCGCGGGTGTAGGCTCTGCGAA GGAGTATGACGGGCGGGCGGGCGGGCGGGGGGGGGAGGGGGTTGCAGGCA TATGTGCAGCCATTTTTTAACGAATCAAGATTGCGTGTAAAAGTAACACG GACATGTCAAACTAGGTAGGTTGTTAACAGGTAACCTGTCAGTTCTACAA GTGAGAGTGCTCAAGTCCAGCGCCACTTTGAGGTGGATTTATCTCTACCA AAGAAAGCCTTTAAAAGGATCCTTATTCGGATTCACGGCGGCTTAGACCT TCGCTCCTGAGATTAGCTGTGCTGCTGCTGAGAAGAGTGTCTAAATTGTG AGAATGCTCGCAGGGTGCCCCTCCCTCATGCAGCCGATTTAGGTTGAGGA CGGCAACCCGAAAATTATACGAGGCGATAGAGCTACTAGCAGAGTCCACA CCGTCGATAGGTTCAGCGACGATGGGTCCCAGAGATATCCCTTGCAACAG CCGTGAAGCCGAGCCGTAAAAATCGTCAAGATTAGGTAATAGAATCTATC AGAGACCCGCTCAGTGGGCACGGAGGTGGGGCGTAACGGTGGGGTACGCA TCAGCGGAAGTGCTGCGATACCCTCTCTCAGCTGCTGTTGCTGGAACTCG ATCGGGAGCTGCTGTAAGAGGGGTGCTGCGTTGTGCAGTGCAGACAAGAC TTCAAGACTTACAATAAGATCAACGGTGACGCCAAATCATGGTTTGATCG TAACATTCGAAATTATTTGACATGACAAACAGCTAACTGCTTCTCTGCTC ACCCCCTTATGTGTGTATGTATGCTTCGTGTGCCGCTCCCAGCTGACGGT GATGTCAGTGTTTTTCGTCGGACACATCCACTTGTATGGTATTGCCCAGT TCCTGTTCGGTGGACTTGGGCCCGTGATTGCGTGGCCTTTGCTCATGAGC TCAACGGTGCTGGGGGGGCAGCTATGGGGCGTGTGGATGAAAGAGTGGGT AGGGGTCCCTGTGCAGGCGGTTTGCATTAACGTCGCTTCCATATCCCTCC TCGTGATGGCCGTGATCATCATTGCCATCGCCGGCGCCGTATTGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27249:322..1568-

>mRNA_H-paniculata_contig27249.7451.1 ID=mRNA_H-paniculata_contig27249.7451.1|Name=mRNA_H-paniculata_contig27249.7451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig27249:322..1568- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGGCATCGTAGCCCCATTGGTTATATGGCTGCTCGCCTTTTCGTT
TGCAGGACTGTGGAACGTGATATACGCGTGTTACCTCTTGTCTTCAAAAG
GCACATGGGGTCGCTACATGAGCACTAGCGGTCGAGATATCGTGGACCAT
TCCGTCCGGATGCCGGGCATCGTAGCCCCATTGGTTATATGGCTGCTCGC
CTTTTCGTTTGCAGGACTGTGGAACGTGATATACGCGTGTTACCTCTTGT
CTTCAAAAGGCACATGGGGTCGCTACATGAGCACTAGCGGTCGAGATATC
GTGGACCATTCCGTCCGGCTGACGGTGATGTCAGTGTTTTTCGTCGGACA
CATCCACTTGTATGGTATTGCCCAGTTCCTGTTCGGTGGACTTGGGCCCG
TGATTGCGTGGCCTTTGCTCATGAGCTCAACGGTGCTGGGGGGGCAGCTA
TGGGGCGTGTGGATGAAAGAGTGGGTAGGGGTCCCTGTGCAGGCGGTTTG
CATTAACGTCGCTTCCATATCCCTCCTCGTGATGGCCGTGATCATCATTG
CCATCGCCGGCGCCGTATTGTAACTGACGGTGATGTCAGTGTTTTTCGTC
GGACACATCCACTTGTATGGTATTGCCCAGTTCCTGTTCGGTGGACTTGG
GCCCGTGATTGCGTGGCCTTTGCTCATGAGCTCAACGGTGCTGGGGGGGC
AGCTATGGGGCGTGTGGATGAAAGAGTGGGTAGGGGTCCCTGTGCAGGCG
GTTTGCATTAACGTCGCTTCCATATCCCTCCTCGTGATGGCCGTGATCAT
CATTGCCATCGCCGGCGCCGTATTGTAA
back to top