mRNA_H-paniculata_contig27249.7451.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: D7FKI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI2_ECTSI) HSP 1 Score: 177 bits (448), Expect = 1.570e-52 Identity = 92/140 (65.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query: 1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIAIAGAVL 420
EEG+ G APLV+WLLAFS A LWNV YA YLLS TW RY D+ +TVMS+FFVGHIH YG +Q LFG LGPVIAWPL+MSSTVL GQ+W V+MKEW GVP A+ +NVASI LLV AV IIA+AGAVL
Sbjct: 162 EEGVSGAAAPLVVWLLAFSLAALWNVAYAVYLLSKNETWARYTWVGWSDVARKFRNITVMSLFFVGHIHFYGQSQHLFGDLGPVIAWPLIMSSTVLSGQIWSVFMKEWAGVPPLAMKVNVASICLLVAAVSIIAVAGAVL 301
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A6H5KJ20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ20_9PHAE) HSP 1 Score: 179 bits (454), Expect = 3.800e-52 Identity = 93/140 (66.43%), Postives = 105/140 (75.00%), Query Frame = 1
Query: 1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIAIAGAVL 420
EEG+ G APLV+WLLAFS A LWNV YA YLLS TW RY D+ S +TVMS+FFVGHIH YG +Q LFG LGPV+AWPL+MSSTVL GQ+W V+MKEW GVP A+ +NVASI LLV AV IIAIAGAVL
Sbjct: 281 EEGVSGAAAPLVVWLLAFSLAALWNVAYAVYLLSKNETWARYTWVGWSDVARKSRNITVMSLFFVGHIHFYGQSQHLFGDLGPVVAWPLIMSSTVLSGQIWSVFMKEWAGVPPLAMKVNVASICLLVAAVSIIAIAGAVL 420
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A355J058_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A355J058_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 1.150e-14 Identity = 41/132 (31.06%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVII 396
+ G+ ++A V+W L F+ L N+ Y YL+S K T +++ + + + + MS ++G +LYG L G LG V+ WPLL+S +++ G +WG++ EW G Q+ + A + +L+ AV++
Sbjct: 199 QSGVNSVLAGNVVWSLFFTMGALVNMGYCLYLVSRKSTGKSFVNEYK---IQNWLLILAMSAMWIGSFYLYGFGSTLLGSLGLVVGWPLLVSLSIVVGNVWGIYRGEWKGASAQSRRLINAGLIILIAAVVV 327
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A2V9I738_9BACT (Uncharacterized protein n=3 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9I738_9BACT) HSP 1 Score: 65.1 bits (157), Expect = 1.200e-9 Identity = 36/117 (30.77%), Postives = 61/117 (52.14%), Query Frame = 1
Query: 40 WLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAV 390
W +F L N++ + LS + W Y + + H + +M + ++G +YG L G LGPVI WP+ MS+ ++ G WG MKEW P A+ + ++ I++ V+A+
Sbjct: 221 WAFTVTFGFLPNLLVSLVRLSQENLWPVYRQETA---LSHWLWPPLMGLMWIGGTAIYGSGASLLGPLGPVIGWPVYMSTMIILGNFWGWIMKEWSRAPSVALRLLMSGIAVQVLAI 334
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A1I2JXD4_9BACT (L-rhamnose-H+ transport protein n=1 Tax=Sunxiuqinia elliptica TaxID=655355 RepID=A0A1I2JXD4_9BACT) HSP 1 Score: 63.2 bits (152), Expect = 5.580e-9 Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 1
Query: 1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVR----LTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIA 402
E G+ +A VIW L F+ L N+ Y ++L +++ +H + MS ++G + YG + G LG V+ WPLL+S +++ G LWG++ EW G P +A I +L+ AV+IIA
Sbjct: 197 EHGVGQAMAGNVIWSLFFTAGSLVNMGYCLFVLIKGKELKAFLN-------EHKTMNWGLILGMSAMWIGSFYAYGYGAVVLGDLGLVVGWPLLVSLSIVIGNLWGIFRGEWTGAPQKARKTLNLGILVLIGAVLIIA 327
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A5B9Q7Y8_9BACT (L-rhamnose-proton symporter n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9Q7Y8_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 2.690e-8 Identity = 37/125 (29.60%), Postives = 60/125 (48.00%), Query Frame = 1
Query: 37 IWLLAFSFAGLWNVIYACYLLSSKGTWGRY-MSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIAIA 408
+W LA S L +++Y LL TW Y SG ++ +M F+ YG+ G LGPVI WP+ +SS ++G WG EW P + + + + I L V ++++++A
Sbjct: 212 VWGLACSIGSLPSIVYCATLLRKNSTWTTYRFPGSGWNVA----LCVLMGALFIIATVGYGMGALRMGPLGPVIGWPVYISSLIIGNCFWGWLTGEWQNAPTKLIGLMIVGIFLQVAGIVVLSLA 332
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A5K7S3G6_9BACT (L-rhamnose-proton symporter n=1 Tax=Aquipluma nitroreducens TaxID=2010828 RepID=A0A5K7S3G6_9BACT) HSP 1 Score: 60.8 bits (146), Expect = 3.430e-8 Identity = 33/112 (29.46%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 1 EEGMPGIVAPLVIWLLAFSFAGLWNVIYACYLL----SSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEW 324
G+ I+A V+W L FS + N Y +L+ S K + + + + + + MSV ++G + YGI + G G +I WPLL++ +++ G LWG++ EW
Sbjct: 176 NSGVNSILAGNVVWSLFFSSGAIINAGYCLFLINRTKSIKSFFNEHKAINW-------ILMLAMSVMWIGSFYFYGIGCSMLGDYGLIIGWPLLITLSIVVGNLWGLYRGEW 280
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A4R6GLD8_9BACT (Uncharacterized protein n=1 Tax=Sunxiuqinia elliptica TaxID=655355 RepID=A0A4R6GLD8_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 2.190e-6 Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 196 GHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVIIIA 402
G + YG + G LG V+ WPLL+S +++ G LWG++ EW G P +A I +L+ AV+IIA
Sbjct: 5 GDFYAYGYGAVVLGDLGLVVGWPLLVSLSIVIGNLWGIFRGEWTGAPQKARKTLNLGILVLIGAVLIIA 73
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: UPI00159EB975 (hypothetical protein n=1 Tax=Bacteroides thetaiotaomicron TaxID=818 RepID=UPI00159EB975) HSP 1 Score: 52.4 bits (124), Expect = 5.970e-6 Identity = 34/108 (31.48%), Postives = 52/108 (48.15%), Query Frame = 1
Query: 58 FAGL-WNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLFGGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLL 378
F GL N YA +LL TWG + S + + SV + + + L GI G LG VI WP+++S +++ G +WG EW + + VAS+ L+
Sbjct: 4 FGGLLMNAGYAIFLLCKNKTWGDF-SFKQQGSITASVWAVITGFLWFLPLGLSGIVSVSIGELGNVITWPVMLSLSLIFGNIWGYLTGEWKNTKHSFLLMIVASVILI 110
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Match: A0A653AIU1_9BACT (L-rhamnose-H+ transporter n=1 Tax=uncultured Paludibacter sp. TaxID=497635 RepID=A0A653AIU1_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 1.890e-5 Identity = 30/112 (26.79%), Postives = 56/112 (50.00%), Query Frame = 1
Query: 67 LWNVIYACYLLSSKGTWGRYMSTSGRDIVDHSVRLTVMSVFFVGHIHLYGIAQFLF--GGLGPVIAWPLLMSSTVLGGQLWGVWMKEWVGVPVQAVCINVASISLLVMAVII 396
L N++Y Y+ T G T ++++ + T+ + + G+ Q F G + +W +LMS V+ +WG+ +KEWVGV A+ +A + +L+ ++II
Sbjct: 227 LTNLVYCLYMNKKNKTGGEIFKTPTNILINNLLFCTLAGLLWYSQFFGLGMGQSFFETGSVMMAFSWSILMSLNVVFSNVWGIILKEWVGVGKNAIMFLIAGMLVLIFSLII 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27249.7451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27249.7451.1 >prot_H-paniculata_contig27249.7451.1 ID=prot_H-paniculata_contig27249.7451.1|Name=mRNA_H-paniculata_contig27249.7451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp MPGIVAPLVIWLLAFSFAGLWNVIYACYLLSSKGTWGRYMSTSGRDIVDHback to top mRNA from alignment at H-paniculata_contig27249:322..1568- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27249.7451.1 ID=mRNA_H-paniculata_contig27249.7451.1|Name=mRNA_H-paniculata_contig27249.7451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1247bp|location=Sequence derived from alignment at H-paniculata_contig27249:322..1568- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27249:322..1568- >mRNA_H-paniculata_contig27249.7451.1 ID=mRNA_H-paniculata_contig27249.7451.1|Name=mRNA_H-paniculata_contig27249.7451.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig27249:322..1568- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |