mRNA_H-paniculata_contig27217.7445.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME) HSP 1 Score: 80.5 bits (197), Expect = 6.970e-16 Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
E L++DL GPM++ SLGG YV+++VDDYSRF VRF+K KSD S KG KI+ IR+D+G++FD++
Sbjct: 93 ELLHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKIIRIRSDHGKEFDNE 169
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3DQT9_CUCME (Gag/pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQT9_CUCME) HSP 1 Score: 77.4 bits (189), Expect = 8.360e-15 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
E L++DL GPM+ SLG YV+++VDDYSRF VRF+K KSD S KG KI+ IR+D+G++FD++
Sbjct: 343 ELLHLDLIGPMKTESLGRKKYVLVVVDDYSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFDNE 419
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3CAR9_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CAR9_CUCME) HSP 1 Score: 75.5 bits (184), Expect = 3.880e-14 Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
E L+++L GPM+ SLGG YV+++VDDYSRF VRF+K+KSD S K KI+ IR+D+G++FD++
Sbjct: 414 ELLHLNLMGPMQTKSLGGMKYVLVVVDDYSRFTWVRFLKEKSDTVKLCISLCLNLQREKRQKIIRIRSDHGKEFDNE 490
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3BA69_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BA69_CUCME) HSP 1 Score: 75.5 bits (184), Expect = 3.940e-14 Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
E L+++L GPM+ SLGG YV+++VDDYS+F VRF+K+K D S KG KI+ IR+D+G++FD++
Sbjct: 311 ELLHLNLMGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIRSDHGKEFDNE 387
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3CS19_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CS19_CUCME) HSP 1 Score: 73.6 bits (179), Expect = 1.900e-13 Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
E L++DL GPM+ SLGG YV+++VDDYSRF V F+K KSD S KG KI+ IR+D+ ++FD++
Sbjct: 461 ELLHLDLMGPMQTESLGGKKYVLVVVDDYSRFTWVEFLKGKSDTGKLCISLCLNLQHEKGQKIIRIRSDHEKEFDNE 537
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5A7T7U0_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7T7U0_CUCME) HSP 1 Score: 73.2 bits (178), Expect = 1.990e-13 Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
E L+++L GPM+ SL G YV+++VDDYS+F VRF+K KSD S KG KI+ IR+D G++FD++
Sbjct: 265 ELLHLNLMGPMQTESLRGKKYVLVVVDDYSKFTRVRFLKGKSDTVKLCISLCLNLQREKGQKIIRIRSDYGKEFDNE 341
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A392Q4X2_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q4X2_9FABA) HSP 1 Score: 69.3 bits (168), Expect = 4.440e-13 Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSDFFV 240
E L++DL GPM+V SLGG YV ++VDD+SRF V F+++KSD + + K IV IR+D+G++F++ F+
Sbjct: 51 ELLHMDLMGPMQVESLGGKRYVFVMVDDFSRFTWVDFLREKSDTFEVFKDLYKQLQREKDSVIVRIRSDHGKEFENAKFL 130
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3E4L4_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3E4L4_CUCME) HSP 1 Score: 72.4 bits (176), Expect = 4.820e-13 Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 13 VDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
+D+ GPM+ SLGG YV+++VDDYSRF V F+K KSD S KG KI+ IR+D+G++FD++
Sbjct: 336 LDINGPMQTESLGGKKYVLVVVDDYSRFTWVPFLKGKSDTVKLCISLCLNLQGEKGQKIIRIRSDHGKEFDNE 408
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: UPI000B774114 (uncharacterized protein LOC110704100 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B774114) HSP 1 Score: 72.4 bits (176), Expect = 4.850e-13 Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFD 225
E L++DL GPMRV + G Y++++VDDYSRF V F+++KS+ E + K L +VA+R+D+G +FD
Sbjct: 593 ELLHIDLCGPMRVKTPKGKQYILVVVDDYSRFTWVSFLREKSEALLEFSKICKEVQIEKNLHVVAVRSDHGREFD 667
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A7N2LKM9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LKM9_QUELO) HSP 1 Score: 72.4 bits (176), Expect = 4.860e-13 Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDS 228
E L+VDL GP R SLGG Y+M++VDDYSR+ V F+++KS+ L+ + KG+ I +R+D+G +F++
Sbjct: 230 ELLHVDLMGPTRTESLGGKRYIMVVVDDYSRYTGVDFLREKSEACERLEILCKKLQNEKGIPIAKVRSDHGREFEN 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27217.7445.1 >prot_H-paniculata_contig27217.7445.1 ID=prot_H-paniculata_contig27217.7445.1|Name=mRNA_H-paniculata_contig27217.7445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp MRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGback to top mRNA from alignment at H-paniculata_contig27217:2519..2758+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27217.7445.1 ID=mRNA_H-paniculata_contig27217.7445.1|Name=mRNA_H-paniculata_contig27217.7445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig27217:2519..2758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27217:2519..2758+ >mRNA_H-paniculata_contig27217.7445.1 ID=mRNA_H-paniculata_contig27217.7445.1|Name=mRNA_H-paniculata_contig27217.7445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig27217:2519..2758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |