mRNA_H-paniculata_contig27217.7445.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27217.7445.1
Unique NamemRNA_H-paniculata_contig27217.7445.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME)

HSP 1 Score: 80.5 bits (197), Expect = 6.970e-16
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
            E L++DL GPM++ SLGG  YV+++VDDYSRF  VRF+K KSD      S        KG KI+ IR+D+G++FD++
Sbjct:   93 ELLHLDLMGPMQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKIIRIRSDHGKEFDNE 169          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3DQT9_CUCME (Gag/pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQT9_CUCME)

HSP 1 Score: 77.4 bits (189), Expect = 8.360e-15
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
            E L++DL GPM+  SLG   YV+++VDDYSRF  VRF+K KSD      S        KG KI+ IR+D+G++FD++
Sbjct:  343 ELLHLDLIGPMKTESLGRKKYVLVVVDDYSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFDNE 419          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3CAR9_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CAR9_CUCME)

HSP 1 Score: 75.5 bits (184), Expect = 3.880e-14
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
            E L+++L GPM+  SLGG  YV+++VDDYSRF  VRF+K+KSD      S        K  KI+ IR+D+G++FD++
Sbjct:  414 ELLHLNLMGPMQTKSLGGMKYVLVVVDDYSRFTWVRFLKEKSDTVKLCISLCLNLQREKRQKIIRIRSDHGKEFDNE 490          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3BA69_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BA69_CUCME)

HSP 1 Score: 75.5 bits (184), Expect = 3.940e-14
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
            E L+++L GPM+  SLGG  YV+++VDDYS+F  VRF+K+K D      S        KG KI+ IR+D+G++FD++
Sbjct:  311 ELLHLNLMGPMQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIRSDHGKEFDNE 387          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3CS19_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CS19_CUCME)

HSP 1 Score: 73.6 bits (179), Expect = 1.900e-13
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
            E L++DL GPM+  SLGG  YV+++VDDYSRF  V F+K KSD      S        KG KI+ IR+D+ ++FD++
Sbjct:  461 ELLHLDLMGPMQTESLGGKKYVLVVVDDYSRFTWVEFLKGKSDTGKLCISLCLNLQHEKGQKIIRIRSDHEKEFDNE 537          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5A7T7U0_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7T7U0_CUCME)

HSP 1 Score: 73.2 bits (178), Expect = 1.990e-13
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
            E L+++L GPM+  SL G  YV+++VDDYS+F  VRF+K KSD      S        KG KI+ IR+D G++FD++
Sbjct:  265 ELLHLNLMGPMQTESLRGKKYVLVVVDDYSKFTRVRFLKGKSDTVKLCISLCLNLQREKGQKIIRIRSDYGKEFDNE 341          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A392Q4X2_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q4X2_9FABA)

HSP 1 Score: 69.3 bits (168), Expect = 4.440e-13
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSDFFV 240
            E L++DL GPM+V SLGG  YV ++VDD+SRF  V F+++KSD     +    +    K   IV IR+D+G++F++  F+
Sbjct:   51 ELLHMDLMGPMQVESLGGKRYVFVMVDDFSRFTWVDFLREKSDTFEVFKDLYKQLQREKDSVIVRIRSDHGKEFENAKFL 130          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A5D3E4L4_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3E4L4_CUCME)

HSP 1 Score: 72.4 bits (176), Expect = 4.820e-13
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   13 VDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDSD 231
            +D+ GPM+  SLGG  YV+++VDDYSRF  V F+K KSD      S        KG KI+ IR+D+G++FD++
Sbjct:  336 LDINGPMQTESLGGKKYVLVVVDDYSRFTWVPFLKGKSDTVKLCISLCLNLQGEKGQKIIRIRSDHGKEFDNE 408          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: UPI000B774114 (uncharacterized protein LOC110704100 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B774114)

HSP 1 Score: 72.4 bits (176), Expect = 4.850e-13
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFD 225
            E L++DL GPMRV +  G  Y++++VDDYSRF  V F+++KS+          E  + K L +VA+R+D+G +FD
Sbjct:  593 ELLHIDLCGPMRVKTPKGKQYILVVVDDYSRFTWVSFLREKSEALLEFSKICKEVQIEKNLHVVAVRSDHGREFD 667          
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Match: A0A7N2LKM9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LKM9_QUELO)

HSP 1 Score: 72.4 bits (176), Expect = 4.860e-13
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 ECLYVDLGGPMRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKGLKIVAIRTDNGEDFDS 228
            E L+VDL GP R  SLGG  Y+M++VDDYSR+  V F+++KS+    L+    +    KG+ I  +R+D+G +F++
Sbjct:  230 ELLHVDLMGPTRTESLGGKRYIMVVVDDYSRYTGVDFLREKSEACERLEILCKKLQNEKGIPIAKVRSDHGREFEN 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27217.7445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7TVE6_CUCME6.970e-1649.35Integrase catalytic domain-containing protein n=2 ... [more]
A0A5D3DQT9_CUCME8.360e-1548.05Gag/pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A5D3CAR9_CUCME3.880e-1446.75Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A5D3BA69_CUCME3.940e-1445.45Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A5D3CS19_CUCME1.900e-1346.75Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A5A7T7U0_CUCME1.990e-1345.45Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A392Q4X2_9FABA4.440e-1342.50Retrovirus-related pol polyprotein from transposon... [more]
A0A5D3E4L4_CUCME4.820e-1346.58Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
UPI000B7741144.850e-1342.67uncharacterized protein LOC110704100 n=1 Tax=Cheno... [more]
A0A7N2LKM9_QUELO4.860e-1342.11Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27217contigH-paniculata_contig27217:2519..2758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog3641.EOY19682
Hectar predicted targeting categoryother localisation
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size210
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.8368058-UTR-H-paniculata_contig27217:2518..25481622929819.8368058-UTR-H-paniculata_contig27217:2518..2548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27217 2519..2548 +
1691481025.773334-UTR-H-paniculata_contig27217:2518..25481691481025.773334-UTR-H-paniculata_contig27217:2518..2548Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27217 2519..2548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929819.8574862-CDS-H-paniculata_contig27217:2548..27581622929819.8574862-CDS-H-paniculata_contig27217:2548..2758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27217 2549..2758 +
1691481025.782257-CDS-H-paniculata_contig27217:2548..27581691481025.782257-CDS-H-paniculata_contig27217:2548..2758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27217 2549..2758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27217.7445.1prot_H-paniculata_contig27217.7445.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27217 2549..2758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27217.7445.1

>prot_H-paniculata_contig27217.7445.1 ID=prot_H-paniculata_contig27217.7445.1|Name=mRNA_H-paniculata_contig27217.7445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MRVTSLGGSSYVMIIVDDYSRFQAVRFIKKKSDDTAALQSYIAEYIMPKG
LKIVAIRTDNGEDFDSDFFV
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mRNA from alignment at H-paniculata_contig27217:2519..2758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27217.7445.1 ID=mRNA_H-paniculata_contig27217.7445.1|Name=mRNA_H-paniculata_contig27217.7445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig27217:2519..2758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTGCCTATACGTCGACCTGGGCGGACCCATGCGAGTAACCAGCTTGGG CGGTAGCTCGTATGTGATGATCATCGTCGACGACTATTCGCGGTTCCAGG CTGTAAGGTTCATCAAGAAAAAGAGCGACGACACTGCAGCTCTTCAGAGC TACATCGCCGAATACATCATGCCGAAGGGACTTAAGATCGTCGCTATTCG CACGGACAACGGCGAGGACTTCGATAGTGATTTTTTCGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig27217:2519..2758+

>mRNA_H-paniculata_contig27217.7445.1 ID=mRNA_H-paniculata_contig27217.7445.1|Name=mRNA_H-paniculata_contig27217.7445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig27217:2519..2758+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAGTAACCAGCTTGGGCGGTAGCTCGTATGTGATGATCATCGTCGA
CGACTATTCGCGGTTCCAGGCTGTAAGGTTCATCAAGAAAAAGAGCGACG
ACACTGCAGCTCTTCAGAGCTACATCGCCGAATACATCATGCCGAAGGGA
CTTAAGATCGTCGCTATTCGCACGGACAACGGCGAGGACTTCGATAGTGA
TTTTTTCGTCATGCGAGTAACCAGCTTGGGCGGTAGCTCGTATGTGATGA
TCATCGTCGACGACTATTCGCGGTTCCAGGCTGTAAGGTTCATCAAGAAA
AAGAGCGACGACACTGCAGCTCTTCAGAGCTACATCGCCGAATACATCAT
GCCGAAGGGACTTAAGATCGTCGCTATTCGCACGGACAACGGCGAGGACT
TCGATAGTGATTTTTTCGTC
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