mRNA_H-paniculata_contig2715.7427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2715.7427.1
Unique NamemRNA_H-paniculata_contig2715.7427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2715.7427.1 vs. uniprot
Match: D7FRV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV5_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 8.890e-15
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   61 LSEFWSCLDPKQRDSLLTINGRCVMDTMDCELCRELLASAIRLTDEGALVD 213
            LSEFWSCLDPKQRDSLLTING+ V D +DC+LCR+L++SA    +E   VD
Sbjct:   36 LSEFWSCLDPKQRDSLLTINGKAVRDALDCDLCRDLVSSATFALEEETKVD 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2715.7427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRV5_ECTSI8.890e-1566.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2715contigH-paniculata_contig2715:16582..16803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size224
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929817.2767768-CDS-H-paniculata_contig2715:16581..168031622929817.2767768-CDS-H-paniculata_contig2715:16581..16803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2715 16582..16803 +
1691481024.534156-CDS-H-paniculata_contig2715:16581..168031691481024.534156-CDS-H-paniculata_contig2715:16581..16803Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2715 16582..16803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2715.7427.1prot_H-paniculata_contig2715.7427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2715 16582..16803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2715.7427.1

>prot_H-paniculata_contig2715.7427.1 ID=prot_H-paniculata_contig2715.7427.1|Name=mRNA_H-paniculata_contig2715.7427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
KNRSGNHGGGNKFGSAGGGGLSEFWSCLDPKQRDSLLTINGRCVMDTMDC
ELCRELLASAIRLTDEGALVDGV*
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mRNA from alignment at H-paniculata_contig2715:16582..16803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2715.7427.1 ID=mRNA_H-paniculata_contig2715.7427.1|Name=mRNA_H-paniculata_contig2715.7427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig2715:16582..16803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAATCGGTCCGGGAACCATGGCGGCGGTAATAAGTTCGGCAGTGCTGG
GGGCGGAGGCCTGTCCGAGTTCTGGTCTTGCCTGGACCCCAAGCAGCGAG
ACTCGCTGTTGACGATTAACGGGCGCTGCGTGATGGACACAATGGACTGC
GAGCTCTGCCGCGAGCTGCTTGCCAGCGCAATTCGCCTGACCGATGAAGG
TGCTTTAGTAGATGGAGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2715:16582..16803+

>mRNA_H-paniculata_contig2715.7427.1 ID=mRNA_H-paniculata_contig2715.7427.1|Name=mRNA_H-paniculata_contig2715.7427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig2715:16582..16803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAATCGGTCCGGGAACCATGGCGGCGGTAATAAGTTCGGCAGTGCTGG
GGGCGGAGGCCTGTCCGAGTTCTGGTCTTGCCTGGACCCCAAGCAGCGAG
ACTCGCTGTTGACGATTAACGGGCGCTGCGTGATGGACACAATGGACTGC
GAGCTCTGCCGCGAGCTGCTTGCCAGCGCAATTCGCCTGACCGATGAAGG
TGCTTTAGTAGATGGAGTATGAAAGAATCGGTCCGGGAACCATGGCGGCG
GTAATAAGTTCGGCAGTGCTGGGGGCGGAGGCCTGTCCGAGTTCTGGTCT
TGCCTGGACCCCAAGCAGCGAGACTCGCTGTTGACGATTAACGGGCGCTG
CGTGATGGACACAATGGACTGCGAGCTCTGCCGCGAGCTGCTTGCCAGCG
CAATTCGCCTGACCGATGAAGGTGCTTTAGTAGATGGAGTATGA
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