prot_H-paniculata_contig1116.742.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1116.742.1
Unique Nameprot_H-paniculata_contig1116.742.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length123
Homology
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: W7U2W4_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2W4_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.830e-40
Identity = 70/126 (55.56%), Postives = 96/126 (76.19%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAA---EDPASPGGMARASFSWER 123
            ++V RARFSALIPREI +++++L  PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD +++ +ISYGPCQFPT+GFVVDRYK I +FQ E FW I++ Y     +    P G+ R  F W+R
Sbjct:  144 LRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITR--FQWKR 267          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.220e-38
Identity = 69/124 (55.65%), Postives = 94/124 (75.81%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEY-AAEDPASPGGMARASFSWER 123
            ++V RARFSALIPREI +++++L  PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD +++ +ISYGPCQFPT+GFVVDRYK I +FQ E FW I++ Y  A +    G      F W+R
Sbjct:  144 LRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGARENGDEGPQGFTRFQWKR 267          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A662YKK0_9STRA (DNA topoisomerase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YKK0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.810e-36
Identity = 73/125 (58.40%), Postives = 97/125 (77.60%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQE-GVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 123
            ++V RARFSALIPR+I+++VQNL+ PNE  + A +AR EIDLR+G+AFTRFQTMR+Q++F EL+E GVISYGPCQFPTLGFVV+R+ +I  F+ EAF  I V +  +D P +P      +F W+R
Sbjct:   98 LRVFRARFSALIPRDIIHAVQNLSVPNEKLSLACDARSEIDLRIGAAFTRFQTMRIQSKFPELKEKGVISYGPCQFPTLGFVVERFLKIQNFEREAFCYISVTHRQDDQPDAP----TTTFKWKR 218          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A0K2UE70_LEPSM (DNA topoisomerase (Fragment) n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2UE70_LEPSM)

HSP 1 Score: 135 bits (339), Expect = 8.950e-36
Identity = 67/123 (54.47%), Postives = 89/123 (72.36%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAEDPASPGGMARASFSWER 123
            +KVLRA+FS +    I N+++ LT P+E Q+KAV+ RQ++DLR+G+AFTRFQT+RL  +F  L E +ISYG CQFPT+GFVV+RYK I AF PEAFW IKV +  E+        +  FSW+R
Sbjct:  172 LKVLRAKFSEITRPSIENALRALTEPDEKQSKAVDVRQQLDLRIGAAFTRFQTLRLAKKFPSLAEQLISYGSCQFPTMGFVVERYKAIEAFVPEAFWKIKVTHEYENT-------KVEFSWKR 287          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A662XMA9_9STRA (DNA topoisomerase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMA9_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.160e-35
Identity = 72/126 (57.14%), Postives = 97/126 (76.98%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 123
            ++V RARFSALIPR+I+++VQNL+ PNE  + A +AR EIDLR+G+AFTRFQTMR+Q++F EL  ++GVISYGPCQFPTLGFVV+R+ +I  F+ EAF  I V +  +D P +P      +F W+R
Sbjct:  174 LRVFRARFSALIPRDIIHAVQNLSVPNEKLSLACDARSEIDLRIGAAFTRFQTMRIQSKFPELKKEKGVISYGPCQFPTLGFVVERFLKIQNFEREAFCYISVTHRQDDQPDAP----TTTFKWKR 295          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A6A3T5P8_9STRA (DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T5P8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.570e-35
Identity = 72/126 (57.14%), Postives = 95/126 (75.40%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 123
            ++V RARFSALIPR+I+++VQNL  PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  L  ++ VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D P +P      +F W+R
Sbjct:  140 LRVFRARFSALIPRDIIHAVQNLAEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALNQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYHISVTHQQNDQPDAP----TTTFKWKR 261          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A8K1C477_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C477_PYTOL)

HSP 1 Score: 138 bits (347), Expect = 2.140e-35
Identity = 72/126 (57.14%), Postives = 96/126 (76.19%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 123
            ++VLRARFSALIPR+I+++VQNL  P+E  + A +AR EIDLR+G+AFTRFQT+R+QN+F  L  ++GVISYGPCQFPTLGFVV+RY +I  F+ EAF  I V +  +D P  P    + +F+W R
Sbjct:  141 LRVLRARFSALIPRDIVHAVQNLAEPDERLSLACDARSEIDLRIGAAFTRFQTVRIQNKFPMLKKEKGVISYGPCQFPTLGFVVERYLQIQNFEREAFHYIAVTHERQDLPEKP----KTTFNWRR 262          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: D0NZ98_PHYIT (DNA topoisomerase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NZ98_PHYIT)

HSP 1 Score: 137 bits (346), Expect = 2.910e-35
Identity = 72/126 (57.14%), Postives = 96/126 (76.19%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 123
            ++V RARFSALIPR+I+++VQNL+ PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  L  ++ VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D P +P      +F W+R
Sbjct:  142 LRVFRARFSALIPRDIVHAVQNLSQPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALNQEKNVISYGPCQFPTLGFVVERFLKIRNFEREAFYYISVTHQQTDQPDAP----TTTFKWKR 263          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A0W8CUK4_PHYNI (DNA topoisomerase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CUK4_PHYNI)

HSP 1 Score: 136 bits (343), Expect = 3.590e-35
Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAEDPASPGGMARASFSWER 123
            ++V RARFSALIPR+I+++VQNL+ PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  L  ++ VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D          +F W+R
Sbjct:  164 LRVFRARFSALIPRDIIHAVQNLSEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALSQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQRTDQLD---APTTTFKWKR 285          
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: G4YKY0_PHYSP (DNA topoisomerase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKY0_PHYSP)

HSP 1 Score: 137 bits (344), Expect = 5.420e-35
Identity = 71/126 (56.35%), Postives = 95/126 (75.40%), Query Frame = 0
Query:    1 MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQE--GVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 123
            ++V RARFSALIPR+I+++VQNL  PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  +++   VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D P +P      +F W+R
Sbjct:  142 LRVFRARFSALIPRDIIHAVQNLAEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPAIKQEKSVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQQTDQPDAP----TTTFKWKR 263          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7U2W4_9STRA6.830e-4055.56DNA topoisomerase n=1 Tax=Nannochloropsis gaditana... [more]
A0A4D9CZ97_9STRA3.220e-3855.65DNA topoisomerase n=1 Tax=Nannochloropsis salina C... [more]
A0A662YKK0_9STRA2.810e-3658.40DNA topoisomerase n=1 Tax=Nothophytophthora sp. Ch... [more]
A0A0K2UE70_LEPSM8.950e-3654.47DNA topoisomerase (Fragment) n=2 Tax=Lepeophtheiru... [more]
A0A662XMA9_9STRA1.160e-3557.14DNA topoisomerase n=1 Tax=Nothophytophthora sp. Ch... [more]
A0A6A3T5P8_9STRA1.570e-3557.14DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 ... [more]
A0A8K1C477_PYTOL2.140e-3557.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0NZ98_PHYIT2.910e-3557.14DNA topoisomerase n=2 Tax=Phytophthora infestans T... [more]
A0A0W8CUK4_PHYNI3.590e-3556.00DNA topoisomerase n=1 Tax=Phytophthora nicotianae ... [more]
G4YKY0_PHYSP5.420e-3556.35DNA topoisomerase n=1 Tax=Phytophthora sojae (stra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003601DNA topoisomerase, type IA, domain 2SMARTSM00436topIban2coord: 2..98
e-value: 4.2E-31
score: 119.3
IPR013824DNA topoisomerase, type IA, central region, subdomain 1GENE3D1.10.460.10coord: 27..102
e-value: 2.8E-29
score: 103.9
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 26..106
e-value: 1.1E-20
score: 74.0
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 2..123
NoneNo IPR availablePANTHERPTHR11390:SF21DNA TOPOISOMERASE 3-ALPHAcoord: 2..123
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 2..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1116contigH-paniculata_contig1116:17733..24030 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1116.742.1mRNA_H-paniculata_contig1116.742.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1116 17733..24630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1116.742.1 ID=prot_H-paniculata_contig1116.742.1|Name=mRNA_H-paniculata_contig1116.742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTR
FQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIK
VEYAAEDPASPGGMARASFSWER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003601Topo_IA_2
IPR013824Topo_IA_cen_sub1
IPR013497Topo_IA_cen
IPR000380Topo_IA
IPR023405Topo_IA_core_domain