mRNA_H-paniculata_contig1116.742.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1116.742.1
Unique NamemRNA_H-paniculata_contig1116.742.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: W7U2W4_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2W4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.290e-41
Identity = 73/134 (54.48%), Postives = 99/134 (73.88%), Query Frame = 2 
Query:   59 VCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAA---EDPASPGGMARASFSWER 451
            VC   N  ++V RARFSALIPREI +++++L  PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD +++ +ISYGPCQFPT+GFVVDRYK I +FQ E FW I++ Y     +    P G+ R  F W+R
Sbjct:  136 VCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGGREDGDGGPQGITR--FQWKR 267
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.130e-39
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = 2 
Query:   59 VCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEY-AAEDPASPGGMARASFSWER 451
            VC   N  ++V RARFSALIPREI +++++L  PN +Q++AV AR EIDLR+G+AFTRFQT++LQ +FD +++ +ISYGPCQFPT+GFVVDRYK I +FQ E FW I++ Y  A +    G      F W+R
Sbjct:  136 VCRAANSRLRVERARFSALIPREIWHALEHLVEPNVYQSEAVNARMEIDLRIGAAFTRFQTLKLQGKFDGVEDSIISYGPCQFPTMGFVVDRYKAIESFQREEFWRIQMAYRGARENGDEGPQGFTRFQWKR 267
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A662YKK0_9STRA (DNA topoisomerase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YKK0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 7.610e-39
Identity = 78/135 (57.78%), Postives = 103/135 (76.30%), Query Frame = 2 
Query:   53 EKVCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQE-GVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 451
            + VC R NR ++V RARFSALIPR+I+++VQNL+ PNE  + A +AR EIDLR+G+AFTRFQTMR+Q++F EL+E GVISYGPCQFPTLGFVV+R+ +I  F+ EAF  I V +  +D P +P      +F W+R
Sbjct:   88 KSVCERSNRRLRVFRARFSALIPRDIIHAVQNLSVPNEKLSLACDARSEIDLRIGAAFTRFQTMRIQSKFPELKEKGVISYGPCQFPTLGFVVERFLKIQNFEREAFCYISVTHRQDDQPDAP----TTTFKWKR 218
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A662XMA9_9STRA (DNA topoisomerase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMA9_9STRA)

HSP 1 Score: 147 bits (370), Expect = 4.830e-38
Identity = 76/136 (55.88%), Postives = 103/136 (75.74%), Query Frame = 2 
Query:   53 EKVCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 451
            + +C R NR ++V RARFSALIPR+I+++VQNL+ PNE  + A +AR EIDLR+G+AFTRFQTMR+Q++F EL  ++GVISYGPCQFPTLGFVV+R+ +I  F+ EAF  I V +  +D P +P      +F W+R
Sbjct:  164 KSICERSNRRLRVFRARFSALIPRDIIHAVQNLSVPNEKLSLACDARSEIDLRIGAAFTRFQTMRIQSKFPELKKEKGVISYGPCQFPTLGFVVERFLKIQNFEREAFCYISVTHRQDDQPDAP----TTTFKWKR 295
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A6A3T5P8_9STRA (DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T5P8_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.650e-37
Identity = 75/136 (55.15%), Postives = 101/136 (74.26%), Query Frame = 2 
Query:   53 EKVCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 451
            + +C + NR ++V RARFSALIPR+I+++VQNL  PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  L  ++ VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D P +P      +F W+R
Sbjct:  130 KSICEKSNRRLRVFRARFSALIPRDIIHAVQNLAEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALNQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYHISVTHQQNDQPDAP----TTTFKWKR 261
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: D8RIM2_SELML (DNA topoisomerase n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RIM2_SELML)

HSP 1 Score: 144 bits (364), Expect = 2.730e-37
Identity = 75/136 (55.15%), Postives = 98/136 (72.06%), Query Frame = 2 
Query:   56 KVCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRF----DELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAEDPASPGGMARASFSWER 451
            +VCL  NR + VLRARFSA I REI ++ QNL  PN + + AV+ARQEIDLR+G++FTRFQTM L++RF    DE ++ ++SYGPCQFPTLGFVV+RY ++ A QPE FW+I   Y +E+ +       ASF W R
Sbjct:  131 EVCLNVNRGLNVLRARFSAFIEREIQHAAQNLHRPNRNLSDAVDARQEIDLRIGASFTRFQTMLLKDRFVLPFDEHEKAILSYGPCQFPTLGFVVERYWQVQAHQPEDFWTINCVYRSENDS-------ASFKWTR 259
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A0W8CUK4_PHYNI (DNA topoisomerase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CUK4_PHYNI)

HSP 1 Score: 143 bits (361), Expect = 2.940e-37
Identity = 73/135 (54.07%), Postives = 99/135 (73.33%), Query Frame = 2 
Query:   53 EKVCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAEDPASPGGMARASFSWER 451
            + +C + NR ++V RARFSALIPR+I+++VQNL+ PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  L  ++ VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D          +F W+R
Sbjct:  154 KSICEKTNRRLRVFRARFSALIPRDIIHAVQNLSEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALSQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQRTDQLD---APTTTFKWKR 285
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: G4YKY0_PHYSP (DNA topoisomerase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YKY0_PHYSP)

HSP 1 Score: 144 bits (364), Expect = 3.060e-37
Identity = 75/134 (55.97%), Postives = 100/134 (74.63%), Query Frame = 2 
Query:   59 VCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQE--GVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAED-PASPGGMARASFSWER 451
            +C R NR ++V RARFSALIPR+I+++VQNL  PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  +++   VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D P +P      +F W+R
Sbjct:  134 ICERSNRRLRVFRARFSALIPRDIIHAVQNLAEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPAIKQEKSVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQQTDQPDAP----TTTFKWKR 263
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: A0A0K2UE70_LEPSM (DNA topoisomerase (Fragment) n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2UE70_LEPSM)

HSP 1 Score: 139 bits (351), Expect = 4.230e-37
Identity = 71/132 (53.79%), Postives = 94/132 (71.21%), Query Frame = 2 
Query:   56 KVCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAEDPASPGGMARASFSWER 451
            +VCLR    +KVLRA+FS +    I N+++ LT P+E Q+KAV+ RQ++DLR+G+AFTRFQT+RL  +F  L E +ISYG CQFPT+GFVV+RYK I AF PEAFW IKV +  E+        +  FSW+R
Sbjct:  163 EVCLRVAPRLKVLRAKFSEITRPSIENALRALTEPDEKQSKAVDVRQQLDLRIGAAFTRFQTLRLAKKFPSLAEQLISYGSCQFPTMGFVVERYKAIEAFVPEAFWKIKVTHEYENT-------KVEFSWKR 287
[Close]
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Match: W2PKU3_PHYPN (DNA topoisomerase n=15 Tax=Phytophthora TaxID=4783 RepID=W2PKU3_PHYPN)

HSP 1 Score: 143 bits (361), Expect = 7.780e-37
Identity = 73/135 (54.07%), Postives = 99/135 (73.33%), Query Frame = 2 
Query:   53 EKVCLRRNRNMKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTRFQTMRLQNRFDEL--QEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIKVEYAAEDPASPGGMARASFSWER 451
            + +C + NR ++V RARFSALIPR+I+++VQNL+ PNE  + AV+AR EIDLR+G+AFTRFQTMR+Q+RF  L  ++ VISYGPCQFPTLGFVV+R+ +I  F+ EAF+ I V +   D          +F W+R
Sbjct:  130 KSICEKTNRRLRVFRARFSALIPRDIIHAVQNLSEPNEKLSLAVDARSEIDLRIGAAFTRFQTMRIQSRFPALSQEKNVISYGPCQFPTLGFVVERFLKIQNFEREAFYYISVTHQRTDQLD---APTTTFKWKR 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1116.742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7U2W4_9STRA6.290e-4154.48DNA topoisomerase n=1 Tax=Nannochloropsis gaditana... [more]
A0A4D9CZ97_9STRA4.130e-3954.55DNA topoisomerase n=1 Tax=Nannochloropsis salina C... [more]
A0A662YKK0_9STRA7.610e-3957.78DNA topoisomerase n=1 Tax=Nothophytophthora sp. Ch... [more]
A0A662XMA9_9STRA4.830e-3855.88DNA topoisomerase n=1 Tax=Nothophytophthora sp. Ch... [more]
A0A6A3T5P8_9STRA1.650e-3755.15DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 ... [more]
D8RIM2_SELML2.730e-3755.15DNA topoisomerase n=4 Tax=Selaginella moellendorff... [more]
A0A0W8CUK4_PHYNI2.940e-3754.07DNA topoisomerase n=1 Tax=Phytophthora nicotianae ... [more]
G4YKY0_PHYSP3.060e-3755.97DNA topoisomerase n=1 Tax=Phytophthora sojae (stra... [more]
A0A0K2UE70_LEPSM4.230e-3753.79DNA topoisomerase (Fragment) n=2 Tax=Lepeophtheiru... [more]
W2PKU3_PHYPN7.780e-3754.07DNA topoisomerase n=15 Tax=Phytophthora TaxID=4783... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1116contigH-paniculata_contig1116:17733..24630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog4787.PITG_18634T0
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categorymitochondrion
GOsGO:0000002,GO:0000003,GO:0000018,GO:0000070,GO:0000278,GO:0000280,GO:0000712,GO:0000723,GO:0000724,GO:0000725,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006278,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007005,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009611,GO:0009888,GO:0009987,GO:0010833,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022414,GO:0031099,GO:0031323,GO:0031422,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040007,GO:0042060,GO:0042246,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044786,GO:0045132,GO:0046483,GO:0048285,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0060249,GO:0060255,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902969,GO:1903046,GO:1903047
EggNOG free text desc.Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand
EggNOG OGs3Q8VP@4776,COG0550@1,KOG1956@2759
Ec32 ortholog descriptionputative DNA topoisomerase III
Ec32 orthologEc-03_001530.1
EC5.99.1.2
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons4
Model size452
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1116.742.1prot_H-paniculata_contig1116.742.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1116 17733..24030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.2911642-CDS-H-paniculata_contig1116:17732..178341622928821.2911642-CDS-H-paniculata_contig1116:17732..17834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1116 17733..17834 -
1691480633.3275154-CDS-H-paniculata_contig1116:17732..178341691480633.3275154-CDS-H-paniculata_contig1116:17732..17834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1116 17733..17834 -
1622928821.305422-CDS-H-paniculata_contig1116:21002..210981622928821.305422-CDS-H-paniculata_contig1116:21002..21098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1116 21003..21098 -
1691480633.3461573-CDS-H-paniculata_contig1116:21002..210981691480633.3461573-CDS-H-paniculata_contig1116:21002..21098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1116 21003..21098 -
1622928821.3169124-CDS-H-paniculata_contig1116:23859..240301622928821.3169124-CDS-H-paniculata_contig1116:23859..24030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1116 23860..24030 -
1691480633.3536174-CDS-H-paniculata_contig1116:23859..240301691480633.3536174-CDS-H-paniculata_contig1116:23859..24030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1116 23860..24030 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928821.3261342-UTR-H-paniculata_contig1116:24030..240541622928821.3261342-UTR-H-paniculata_contig1116:24030..24054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1116 24031..24054 -
1691480633.3610795-UTR-H-paniculata_contig1116:24030..240541691480633.3610795-UTR-H-paniculata_contig1116:24030..24054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1116 24031..24054 -
1622928821.3356981-UTR-H-paniculata_contig1116:24572..246301622928821.3356981-UTR-H-paniculata_contig1116:24572..24630Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1116 24573..24630 -
1691480633.371202-UTR-H-paniculata_contig1116:24572..246301691480633.371202-UTR-H-paniculata_contig1116:24572..24630Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1116 24573..24630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1116.742.1

>prot_H-paniculata_contig1116.742.1 ID=prot_H-paniculata_contig1116.742.1|Name=mRNA_H-paniculata_contig1116.742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MKVLRARFSALIPREILNSVQNLTPPNEHQAKAVEARQEIDLRLGSAFTR
FQTMRLQNRFDELQEGVISYGPCQFPTLGFVVDRYKRILAFQPEAFWSIK
VEYAAEDPASPGGMARASFSWER
back to top

mRNA from alignment at H-paniculata_contig1116:17733..24630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1116.742.1 ID=mRNA_H-paniculata_contig1116.742.1|Name=mRNA_H-paniculata_contig1116.742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6898bp|location=Sequence derived from alignment at H-paniculata_contig1116:17733..24630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATTGACAGCTCGTGACAAGATACGATGGCTTCCGCTGAAGACTGCCTT
TCGAGAAGGTCGTGACCGGCTCTGGCATGGAGTCTTGGTTAGGGCTGTAT
TTCGTTTGTTCGAAAGGATACTTGAATATTGTTCCGCTTCGCCGACCGAC
ATACCGATACTAGGACCAATATACCAGTATCGTTCATATATCGGTGCCAG
CGAGACGAGCGAGACCAGCTAGCCGCGCCAAGCGCCAGGCGAGCGCTTTT
GCGCAAGCCAAAGCTGCTGCCTTCGGTTGGTGAGGGGGCGTGGCTGGAGG
CGCCAGCATAGACAGAAAACATGCGTGTTCTGCGTTTTTGCTAGATGTTG
GATGATGAACAAATCGTGTGTACTGTGTACATTCACTGGATAATGACTGC
CATAGCGCGCGGGAACAAAACACCAACATACTGCGTGTTGACCACCGATG
GAAATCTCAATTCGCATGACTTCAATCCTTGATCTCTTCAGTCACGCAGT
ATTTGTACCCTAGTGTCATTTTTTTGTAAAGTAAGAGTGTATGCGCGCGC
TCCTGTTGATTTTTTGGCCCGCTAAGGTATGCCTGCGACGAAATCGCAAC
ATGAAGGTCCTGCGGGCTAGGTTCTCCGCGCTTATTCCGCGAGAAATCCT
CAACAGCGTGCAGAACCTCACGCCACCCAACGAGCACCAAGCTAAGGCCG
TGGAGGCTCGACAGGAGATAGACCTCCGGCTGGGCTCTGCCTTTACGCGC
TTTCAGACCATGCGACTACAGGTATATATGTATGTGCCGCACCTCCATCC
CTAGTTGGCCAGTTGGTGTCAGTAAGTACTGTAATCCGACATACCTCCAG
CTAGTTTTCCCGTTTTTATCACGTTTCCTACAGTATTTTATGTCCTTCTT
TTGATTCACTTTTTGCCCTATGGTACTCTTTCAAGAACACCCCCCCCCCC
CCCGCTCCCCTCCCACGATGAAATGAATGGAGAGGCTATCGTGAGAACTT
TAGCCTAAGTTGTTTTGAAATAACATGAAGGGAGGCCAGCAGACATGATG
AAAAACATTATTAGGGTTCTAAGAATATGATCTCTTGCCCCGTCTATATG
CCAGTAAAACAGGCTTTTGTAATTCATGCAGCTTTTTTACGGTTGGTATT
TTGTTTACACGTAATTTTTTTCTGTGGTTGAAGCTATTTACAATGTATGA
ATTGCCGAAACCTTAACTTGGTATGTACACGCCGCGCTCGCTAAGGGCAA
TATTCCAAACCCTGATGATGATTTTATTTGATATCTACAGGTGTCCATTA
AGAATTTCCCCCCCTAAGAAATTGTGCTTAACAGGTGGCCCCATATTGTT
ACTATTCTTACCATTTTAGTATAATTGATTTTTGGTCTTTTTATTCAAGA
GGTCGTGCTTTAGTTTGCCATGTAATGGTTGTTTTGAGCGATGTAAACGT
GTGCCAAAAAATTGGCTCTTGACTAACCATGATCCTCAAGATAACAGTTT
GGATGAATTTATAGTATAAAACTGTGCTGAGCCGAAAAACGATTTGAACC
ATCTCTTCGGGGTACTGCAGCAGCTGTTGACGAAAGAAAGCAGGCGGCTA
CACGCATATGTTCCATATCCCGTGAAACGGGATGGTCGTGGTGGTCGTCA
TTTCCGAACAGCTTGTGATGTCTGTACTCCAGTATTTTGTGAAAAATGAT
TACCTTTATGCGAGCCTAGAAAACTGCTACAAATGCAGCGAGTCGTTATT
CATGCGTCGAGGACAGAGTTCGGATTGCACAGATGAGGCGTCGCGGTGGC
TTCACTACTGGAGTGTTTGCGCAAAACAAATATAATTTCCAAGGTTTGCT
TCGGATCCTTGCACTAGCTGGCAAGCCATCCGTTTGGCGCCCATTTAAGC
TCGTCTGCATTTACTGACTGTAAGGGAGTGAGCCTAGATGAGTTCAAGAA
TTGAACCGCCGGCAACAAGATGAAAAGCATACTTTGAAGACAATGTTCTC
ACTTTGCACCTGAACGTTGAATACAAATTCTTTTTGTAGCTGTTCAGACA
AACGTCTGCGTAGGTGGCCGGGATCCTGTACTCTTCAGCGTTCGCTTACA
GCACAGTCCATAAATAAATGCACCGTCGATTTGACATGGACCACTCAAAA
ACTCGCCAGCTAGTTCGCGGATCAAACAACGAAATTTATATAGGAATTTG
TTTTTGCGCAGACACTCTGGTAGTAGATCCACAGCTACGCCCACAACTCA
GAGGCGAACTAAACAACCCCGCCTTTCAATGGTTGTCATGGAAAATTCAG
CGGGTCGTTTGGGCACATTGACAAACATACATAACTCGCCCGCTGAATAC
ACCATGACGTCTCCAAACAACCAGTGAAAAGCGGGGGGACTTACACCTAT
CTAAGGTGGGGTGGATAGCTAGGCGCCGCAAGTAGTGTGTCTTGAATACG
GTGGGTGTGCTGGTTTAAGAGCGGTCTATTTAAGGTATATCGGGATTTAA
GAGAGGCTGAATTGCCGTGTCATCAATTTTTCAGATTCAAGAGAGTTTTT
TGGCTGCCCAGGCCAACCCTCTCTTGAATCGAGCGGGGATGTGGAAAATG
ACCAGTTCTATACATGATCGAATTGACCGAAAAATCAAAGCTAGTGTTGA
GAAAAATAAGAAAAATAGGAGCTTAATGATACTGTACTGTCCATAGACCA
ACACCGCCTGCGTTTTAATTGAGCCGACTTGAGCAGACAACCACGAAATG
TGTTCATTTGGATTTTTTTTTTTTACCGAGATGAACACAGGCTTCTTCCA
GCTCAATGTGCGACCATGACCACGAGTGCGTTTGTCCGACACTATGTAAA
TCTCTCAGACTTTGGTTTTGGCGGATTTACGATAGTTTTCTTTTGAATCA
AGCAAAAGAGGATCAATGTTTAAGAGAGGGTTTTTCGGCTTGTCATCACT
CTCTTTTAAACTCGCACACCCACTAAAGTGAAACCCCCCCCCAAAAAAGG
GCCAGTTTTGGCGCAACTTTACACAGCCCCATACGCATTACGCCTCCCAA
CAAGCGGAAGAGTCAAGACAATTTCATGCCTTCAACGACATTTTTCTGCA
CGGGCATTCAAAAGAGGCAAAATAATGACTGTCGAGTGGTGCAGCAGGAC
CAAGCGTAAAATATAGAAAGGGCATTCATTTTTGTGCAAGCAATAAATCG
TATATACATACTAGTGGGCGAGAAAACACAAAAAAATATAGGAGGCTCAC
GGGTTAGTTTTCGGGTTTACGGTGCCGCTCTCACCGCAAAGGTCACGGGT
CAGGACCCGATCGTATGCTCTAGACACAGAATCGGGTCTCTGTGACAATG
GGCTAGAAAATTTTCTTCTGTGAGATAGGCGCCAGAGGCAGAAAACTCCG
GGAAAAAATGTGCCCTCCCTCTAGAGCAGGATGCCGCCGACTTGCCATCG
TGAATTCCTGCTTTACGCCGTTCGTCTTTTGAAAGCGTTTGTTCACACGA
TGTCGCTGGGCATCCTGTTGTCTCTGTCGCAGAATCGATTCGACGAGCTT
CAGGAAGGAGTCATCAGCTACGGTCCGTGCCAGTTCCCCACTCTGGGCTT
CGTGGTGGACCGGTACAAACGAATACTGGTAAGGACCGTTTTTAACGTTG
GTGCTCTTCATACTCATTTTCTCTTTTGTCTCATGTCCTTTCCCCCTCCC
TCCGATGTGATCTAATTTTTTTGCTGATAAGTACTCCCCCCCCCCGTCCA
CCCCTACCTTTTCTTTTTTTTGAGAAAGTGACCAAATTCGTTTTTTTTAT
ATTGCGTACAAGTAGATTGTACTAAAACACTAATTGAGCTTTTTTCCGAT
CCTGCGAACATGATCTCATTGTGCTCCTGAGGAAATGGGTAGCAATGCGA
GAATGGAGAAAGGAGAAACGATCAATTATGGGAGGAAAGCAAAAACGCAT
ACACACGTTTGTAATGGCCTCTAGCCCCCTGATGCGGTCATACGATTGGG
TAGGTGGGGTGGGTCACTGGTGGAGCACGACAGTCTTTTGAAAGTGGCTC
ACCAGACCTTTTGGCCGCGTTTTACGCTTGCATTTTTTATTGTTGCCTTG
TTGCGAGAGTGTTCCAGATCCGAATGTGGCACAGAATAAGTCACCAATTG
TTTGATTTTAGTACATAGTTGATTGGTGGTCCCAGTTTAGGCTTGGATTT
TCAGCGGGGCACCATAGTAGCGGCCTAAAATCGGGTCCACTACTACTGTA
CGTAGTACGTGGGCCAGGTGCTTGCTTGCTTGCTTGGCTGCTTGCTTTCG
TGAACAATCGTTTTTAACCCAGAGGAGAGGGGAGCTAGGTAGGTAGGTAG
ATAGGTACCTTTGTGCAAAAAAGAGTGGTATGTACTCCTCTTATCGTAGG
CAGCGACTGGACAATGAACATTGCACGCGGGGGGAGGGGGGGCGTGACAC
CAAGTGCACACGGATATGGTCAATTAATCATCGCTTTTATCATTTTACTT
TTCTGTCTCATCAGTATACTCAGTTACGGTTATAGAGGCAGCTAAACATC
TCCGATGATTTCGTTATTTTTTTAATTGGAGTTCTACATGTTTATTGGGT
TAAAATAATTGTTTTGGGGTCAAACGGTTGAACTTTCAACAGCCGTGACA
AGAAGAACCCAGCGGGAAAAAACCCTTTCGGGACTCAAGGTATTGTCTTA
TAAGCACAGTATGTTGTTATTAGAGAGGCATTTAAACTGTCTCCGATTTT
TACTTTATAGAAGTTCGAATCCTACATGTTGGGGGCGACAACCAAAATAT
TGAGTCAAACAAATGACAATAGCAACACGTGACGTGGAAAAAATCACTCG
GTCGAAAACGACAAACTATGCACGTTTTTTTCGAGTTCTATGGGACAAAT
TCCTGGAAAAAGGCCTTTTTTTCAAACGACTACTTTTTTTGACAGCGAGT
GTTTTGGTGTTAAAAGCCGACTGTTTGCCCCTCCAAAACGATTTTCTATC
ATAAAAACGCGTAGAATTCCAATTCAAGGACAAAACTTGAGTCGGAGATG
TTTAAGTGCCTCTCTTATCGAAACTGAGTGTACTTATGAGACTGTGGAAG
TATGATTATCCCACCCTCTGTTCCATGAGATGAGGCCTGCATGAAAGAAA
ATCCAATTTTTACGAAGGACCAGACAGTACTGAAACACAACTATTGGTGG
TGCGCAGTAACTTGGACTTTCTGTTATTAGAGCATGAAGGTATAATCCAT
GGATCTCCACGTAGCATTTGGGGTCGATGGGATGGAGGCGATGGTTGCAC
AAAGAAGTGCTTCTGGCCAGGGACCGTCCCCAGTTATCGTCGAAAATCTC
ATTCGATGATGAGTACAATCAGGTGCAGCTCTGGGTGCGTGCTGTAGAGA
CCTTCTTCTAGTTTCTGTTAACCATGTGCTCCGCTCGGAATGCTGCTGAA
GTTGTCAAGCGAAAGAGCCTGGCAACTGCTGATCGGCGAGCTTTAATAGT
AGAGCTCCTCATAGGCAGCCAGAATGAGGTCCTAATGAAGGGCTGATCCT
CCAGCACGACCCCATTCTGGGTGCCCGTAAGGAGCTCTGCAAAAAACAGC
TCGTCGCTCTGTAGAAGCCATACTTGTCGCTTGGCAACTACAGCAGTGTT
TTTCAGCGGAACCCATACTCCACAGTCTATCAGAAGATCTCCACACAGAA
CTTCATAGTGAGCGAGCTCCGTTTGCCTTTTCTTTAGGCCCGGCTGTCGG
AAGTGTGTGGTTGGTACTTTGGGAAAAAACACCCCAAAAAACATGTCTGT
CTCATGGTCGTATTCCAGACAATCAATCCCATTCAAACCAACGTTTCAAT
AACATTGGCGACCGGCAGAAAGTAGGCCGGTTTGAAAATCATGGAACAGA
GAATTAAGTACTTGATAGGGTTTGCGGTCGACACTTACAAGCAAATAACG
GGTGCGGAAGGCCTTTGCACGAACAGATAGACGACCGTGGTCGCATCCTG
CACTTCGCCTTGATTGGTGGACCGGTCACATAAGAGCATCGGTAAAAGTT
TTTGCCTCAGCCTTCCGGGGGTTAAAAAGAAAAAAACGGTCACAGAACAT
CTGGCGACGCAGAAGGCGGTTTCGTTGTGTGTTTTCTTGTGCAATAAATA
GACAATAAATGTTGTCCCCACCCTCCATGAATACTATATACTACTACTGG
TTCCCCTATCCAACGTACTAGTGAGACAAGACGGACGGTATCGGATTGTT
ATGCCAAATGATGAGGTCAATTCAACCTGTACAGGAGATGCTAGGGCAAT
TGTGCCGTTGTGACTCCTACTCCGCATACATCCGCGCACAAACACACCTT
GGTACTTTGGTCGATTTGCGGAATCAGTCGCTTAGCAGCATTCAATTGAC
GTGAAGATACCTCCACTTTTAATTCATATTTTTACGTATATTTTATTTTT
TTATTGAACTTGAATGTGTTGGAAATGGTTCAAACCCAAATGAGTCCCAT
TTTGTTGTCCGTCCTTGGCGGAAAGCATACGTATTATAGCTACTATGAAT
ACCCCCCTCCACGCCTAAAAGATAGATATGGTAGGTTAAACATGTAAACA
TGTTTGAGGCACATTTGGTTAAGTAGGAAAGAGGGATCCTCCATCCGAAA
ATGCTCTGATAGGAACAAAGCTCCGTGGTCAATGGCCTGACAACTACGGT
AAGCAAAACATGAGTACGCCCCCCCCCCTTCCCTCCCGCCTCCCGTCGAT
CGTTGGACGACTCTTGTACGACATTTTGCGTTGGTCGTTTCGTCAGGCGT
TCCAACCAGAGGCGTTTTGGAGCATCAAGGTGGAGTACGCCGCGGAAGAT
CCTGCGTCGCCGGGGGGCATGGCTCGAGCTTCTTTTTCTTGGGAAAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1116:17733..24630-

>mRNA_H-paniculata_contig1116.742.1 ID=mRNA_H-paniculata_contig1116.742.1|Name=mRNA_H-paniculata_contig1116.742.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig1116:17733..24630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTCCTGCGGGCTAGGTTCTCCGCGCTTATTCCGCGAGAAATCCT
CAACAGCGTGCAGAACCTCACGCCACCCAACGAGCACCAAGCTAAGGCCG
TGGAGGCTCGACAGGAGATAGACCTCCGGCTGGGCTCTGCCTTTACGCGC
TTTCAGACCATGCGACTACAGATGAAGGTCCTGCGGGCTAGGTTCTCCGC
GCTTATTCCGCGAGAAATCCTCAACAGCGTGCAGAACCTCACGCCACCCA
ACGAGCACCAAGCTAAGGCCGTGGAGGCTCGACAGGAGATAGACCTCCGG
CTGGGCTCTGCCTTTACGCGCTTTCAGACCATGCGACTACAGAATCGATT
CGACGAGCTTCAGGAAGGAGTCATCAGCTACGGTCCGTGCCAGTTCCCCA
CTCTGGGCTTCGTGGTGGACCGGTACAAACGAATACTGAATCGATTCGAC
GAGCTTCAGGAAGGAGTCATCAGCTACGGTCCGTGCCAGTTCCCCACTCT
GGGCTTCGTGGTGGACCGGTACAAACGAATACTGGCGTTCCAACCAGAGG
CGTTTTGGAGCATCAAGGTGGAGTACGCCGCGGAAGATCCTGCGTCGCCG
GGGGGCATGGCTCGAGCTTCTTTTTCTTGGGAAAGGGCGTTCCAACCAGA
GGCGTTTTGGAGCATCAAGGTGGAGTACGCCGCGGAAGATCCTGCGTCGC
CGGGGGGCATGGCTCGAGCTTCTTTTTCTTGGGAAAGG
back to top