prot_H-paniculata_contig2713.7423.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2713.7423.1
Unique Nameprot_H-paniculata_contig2713.7423.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length174
Homology
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.000e-24
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  178 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 310          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.710e-23
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R  ++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  163 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 295          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.850e-23
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  539 IARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 671          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.510e-23
Identity = 54/134 (40.30%), Postives = 81/134 (60.45%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLV-LAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD++ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  170 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 303          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.650e-23
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  +V EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:   86 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 218          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.780e-23
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L   ++T EN++    LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  538 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEG 670          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.690e-23
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNH--IPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H   P GR +  L   G+ +AE G
Sbjct:   15 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAGRRL--LGDAGLPIAEEG 147          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.260e-22
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T E ++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  565 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 697          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.740e-21
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 0
Query:   24 CREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNH 131
            C E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T E+++ I  LV EL  +G+ +N  K+ A+P   H
Sbjct:  219 CYELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 326          
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.820e-21
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 0
Query:   20 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAV--PRRNHIPTGREIAALAAMGINVAEGG 152
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+  P R+  P  R +  L   G+ +AE G
Sbjct:  560 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRL--LGDAGLPIAEEG 692          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JLG6_9PHAE8.000e-2440.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE1.710e-2340.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE2.850e-2340.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE3.510e-2340.30Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KYJ9_9PHAE6.650e-2339.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE6.780e-2339.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHZ7_9PHAE8.690e-2340.74Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJC0_9PHAE1.260e-2239.85Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KT19_9PHAE1.740e-2142.59Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE2.820e-2140.00Reverse transcriptase domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.270coord: 35..132
e-value: 4.9E-6
score: 28.5
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 47..126
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 33..126
e-value: 9.9E-12
score: 44.8
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..148
score: 12.606

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2713contigH-paniculata_contig2713:19020..19541 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2713.7423.1mRNA_H-paniculata_contig2713.7423.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2713 18979..19753 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2713.7423.1 ID=prot_H-paniculata_contig2713.7423.1|Name=mRNA_H-paniculata_contig2713.7423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MPSAPSSGRRSWKKWQSAPVPKCCREKPADVIFEMDTGKRKKISWNTGIH
QGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEEN
LRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAE
GGGRWWWVHRLGPMHSFSGTPSP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom