mRNA_H-paniculata_contig2713.7423.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2713.7423.1
Unique NamemRNA_H-paniculata_contig2713.7423.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.570e-23
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  178 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 310
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.860e-22
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R  ++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  163 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 295
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.460e-22
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  539 IARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 671
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.940e-22
Identity = 54/134 (40.30%), Postives = 81/134 (60.45%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLV-LAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD++ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  170 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 303
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.480e-22
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  +V EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:   86 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 218
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.740e-22
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L   ++T EN++    LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  538 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEG 670
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.580e-22
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNH--IPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+P   H   P GR +  L   G+ +AE G
Sbjct:   15 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAGRRL--LGDAGLPIAEEG 147
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.430e-21
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T E ++ I  LV EL  +G+ +N  K+ A+P   H  T  E   L   G+ +AE G
Sbjct:  565 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG 697
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.680e-20
Identity = 46/108 (42.59%), Postives = 69/108 (63.89%), Query Frame = 3 
Query:  111 CREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAVPRRNH 434
            C E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T E+++ I  LV EL  +G+ +N  K+ A+P   H
Sbjct:  219 CYELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAESIQVIPDLVDELEAVGIIVNRGKSSALPPPGH 326
[Close]
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.100e-20
Identity = 54/135 (40.00%), Postives = 82/135 (60.74%), Query Frame = 3 
Query:   99 VPKCCREKPADVIFEMDTGKRKKISWNTGIHQGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEENLRAIYFLVQELARIGVQINDAKTKAV--PRRNHIPTGREIAALAAMGINVAEGG 497
            + +C  E PA  I+ MD+G+R+ I   +G+ QGDG+GP LFC  + PI+ K R +++ LGV L AY+DD+ L    +T EN++ I  LV EL  +G+ +N  K+ A+  P R+  P  R +  L   G+ +AE G
Sbjct:  560 IARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRL--LGDAGLPIAEEG 692
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2713.7423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JLG6_9PHAE9.570e-2340.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0V7_9PHAE1.860e-2240.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE3.460e-2240.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE3.940e-2240.30Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KYJ9_9PHAE7.480e-2239.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE7.740e-2239.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHZ7_9PHAE9.580e-2240.74Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJC0_9PHAE1.430e-2139.85Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KT19_9PHAE1.680e-2042.59Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE3.100e-2040.00Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2713contigH-paniculata_contig2713:18979..19753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.8
Seed ortholog evalue7.1e-07
Seed eggNOG ortholog7029.ACYPI23751-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,420TT@6656,KOG1075@1,KOG1075@2759
COG Functional cat.C
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons1
Model size775
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2713.7423.1prot_H-paniculata_contig2713.7423.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2713 19020..19541 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.7636583-UTR-H-paniculata_contig2713:18978..190191622929816.7636583-UTR-H-paniculata_contig2713:18978..19019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2713 18979..19019 +
1691481024.2106576-UTR-H-paniculata_contig2713:18978..190191691481024.2106576-UTR-H-paniculata_contig2713:18978..19019Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2713 18979..19019 +
1622929816.8027031-UTR-H-paniculata_contig2713:19541..197531622929816.8027031-UTR-H-paniculata_contig2713:19541..19753Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2713 19542..19753 +
1691481024.2382874-UTR-H-paniculata_contig2713:19541..197531691481024.2382874-UTR-H-paniculata_contig2713:19541..19753Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2713 19542..19753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929816.7811985-CDS-H-paniculata_contig2713:19019..195411622929816.7811985-CDS-H-paniculata_contig2713:19019..19541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2713 19020..19541 +
1691481024.2263458-CDS-H-paniculata_contig2713:19019..195411691481024.2263458-CDS-H-paniculata_contig2713:19019..19541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2713 19020..19541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2713.7423.1

>prot_H-paniculata_contig2713.7423.1 ID=prot_H-paniculata_contig2713.7423.1|Name=mRNA_H-paniculata_contig2713.7423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MPSAPSSGRRSWKKWQSAPVPKCCREKPADVIFEMDTGKRKKISWNTGIH
QGDGLGPALFCMPVGPILRKCREQFEALGVELLAYLDDLVLAMGELTEEN
LRAIYFLVQELARIGVQINDAKTKAVPRRNHIPTGREIAALAAMGINVAE
GGGRWWWVHRLGPMHSFSGTPSP*
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mRNA from alignment at H-paniculata_contig2713:18979..19753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2713.7423.1 ID=mRNA_H-paniculata_contig2713.7423.1|Name=mRNA_H-paniculata_contig2713.7423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=775bp|location=Sequence derived from alignment at H-paniculata_contig2713:18979..19753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAAACGCTTGTGATCACATCGGAAGAATATAATGTACCAATGCCTTCA
GCTCCGTCAAGCGGGCGGCGATCTTGGAAGAAGTGGCAATCCGCACCGGT
GCCAAAATGCTGCCGGGAGAAGCCGGCAGATGTCATTTTCGAGATGGACA
CCGGTAAACGCAAGAAAATCTCCTGGAACACGGGAATCCACCAGGGCGAC
GGACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGACCGATCTTGCGCAA
GTGCCGAGAACAATTCGAGGCTCTGGGGGTGGAGCTGTTGGCCTACCTTG
ACGATCTGGTGCTGGCAATGGGAGAGCTGACGGAAGAAAACTTAAGGGCA
ATCTATTTCCTCGTGCAAGAGCTAGCACGCATAGGAGTGCAAATTAACGA
CGCCAAGACGAAGGCGGTGCCCCGAAGGAACCACATCCCCACCGGAAGGG
AGATCGCCGCGCTGGCGGCGATGGGCATCAACGTCGCAGAGGGAGGGGGG
CGGTGGTGGTGGGTACACCGATTGGGGCCGATGCATTCATTCAGCGGCAC
GCCGTCACCTTAGTCAAGGAAAAGGGGGCAGAGCACCTTGCGCACCTACT
AGGTCATATGCCCGACAAACAAGCGGCGATGCTGATCGCCACAAGTCCAG
GGCCCTGAAGACCTGATTCCTGGAGAAGGTGATGGATGCCGAACTATCCG
ACCAAGCCTGCAGACTAACCGACAATGGCGGACTATGGATGTTGGAGAAC
ATCCTGGAACACCCCCAACCAGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2713:18979..19753+

>mRNA_H-paniculata_contig2713.7423.1 ID=mRNA_H-paniculata_contig2713.7423.1|Name=mRNA_H-paniculata_contig2713.7423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig2713:18979..19753+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCAGCTCCGTCAAGCGGGCGGCGATCTTGGAAGAAGTGGCAATC
CGCACCGGTGCCAAAATGCTGCCGGGAGAAGCCGGCAGATGTCATTTTCG
AGATGGACACCGGTAAACGCAAGAAAATCTCCTGGAACACGGGAATCCAC
CAGGGCGACGGACTGGGACCCGCCCTCTTCTGCATGCCCGTGGGACCGAT
CTTGCGCAAGTGCCGAGAACAATTCGAGGCTCTGGGGGTGGAGCTGTTGG
CCTACCTTGACGATCTGGTGCTGGCAATGGGAGAGCTGACGGAAGAAAAC
TTAAGGGCAATCTATTTCCTCGTGCAAGAGCTAGCACGCATAGGAGTGCA
AATTAACGACGCCAAGACGAAGGCGGTGCCCCGAAGGAACCACATCCCCA
CCGGAAGGGAGATCGCCGCGCTGGCGGCGATGGGCATCAACGTCGCAGAG
GGAGGGGGGCGGTGGTGGTGGGTACACCGATTGGGGCCGATGCATTCATT
CAGCGGCACGCCGTCACCTTAGATGCCTTCAGCTCCGTCAAGCGGGCGGC
GATCTTGGAAGAAGTGGCAATCCGCACCGGTGCCAAAATGCTGCCGGGAG
AAGCCGGCAGATGTCATTTTCGAGATGGACACCGGTAAACGCAAGAAAAT
CTCCTGGAACACGGGAATCCACCAGGGCGACGGACTGGGACCCGCCCTCT
TCTGCATGCCCGTGGGACCGATCTTGCGCAAGTGCCGAGAACAATTCGAG
GCTCTGGGGGTGGAGCTGTTGGCCTACCTTGACGATCTGGTGCTGGCAAT
GGGAGAGCTGACGGAAGAAAACTTAAGGGCAATCTATTTCCTCGTGCAAG
AGCTAGCACGCATAGGAGTGCAAATTAACGACGCCAAGACGAAGGCGGTG
CCCCGAAGGAACCACATCCCCACCGGAAGGGAGATCGCCGCGCTGGCGGC
GATGGGCATCAACGTCGCAGAGGGAGGGGGGCGGTGGTGGTGGGTACACC
GATTGGGGCCGATGCATTCATTCAGCGGCACGCCGTCACCTTAG
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