mRNA_H-paniculata_contig2703.7397.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2703.7397.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 473 bits (1217), Expect = 1.100e-139 Identity = 432/1084 (39.85%), Postives = 546/1084 (50.37%), Query Frame = 1
Query: 1 RVLWDVEASLNEGALTLINGEKPCLRIIFDVMAEFKKKKTNWKLELGLGALQAFGLGEAGGRATTLITRRTWRPHEVAAGGAEQMIQIGDFQVWKSGGITVEY---------------RSDSENIPDSGTSR--------STQEVSQE-------SAEQVDQPGQYFRGIISSSVVLVRVVLAPHQVMHSRVCL---SCMLGTRDMQLLTSAAQSKISRLQRTTRSSFLHAIGSSQRLEVTADIHAPLVVLPDTSNEKSRSSLLVMDLGHISFRRDDDSRTQPVVSNSAAQDEGDA-VARAPSLAVETRHAFVSKKAGSGLRVGGAV------GVAVDYWRLAIAGVQVVVADSASFFGEELGYRGAGAGQS----NTAIVEEFDLFVKIRTAKDTATDCFLGASVAANLPRLSFNLHSSAYQLLSRLLKNELKR--SASG----------VAASSGAGXXXXXXXXXXXXXXXXXXXXXXPIPSVSL-SPSAEARDWRIATVLATELEPVTEIPGEESPGYETDDVDGMLGASATAGSGGGARGSINARHRN-SRWHRRRRSGSGSS----------AHCGVAEEVRSENEEHGRGGRGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVAGEGLTVEVRVSAPFISVLLVHDAGLLSPSVSPPLSPSSAVEEKNQSIGASMP------DDIDGKMAVGK-----------------------------------GRQRATAEGALALIEIHGLGIEFQKSPGR--HPTGVVAENGLDNPRQLQHQQXXXXXXQRIQ-------------QFVLNVMSFHIQDMYQQ-AGDK-FSYFLSSSKPPSPARSYAAIPVVSAAEAVRVA-HVIPER---GETGPAKTTVALSEVWMNWNPETVAALSIFAHGIYGERDGQQGVDGSGDXXXXXXXXXXXPTSGGESSSLQPVKASPGGRSREPTAAAAHERLGAAACVDVGGXXXXDGVKMKRDSVVLIEIGRVSLCLNKEIGGRRLLLLEAEDSTVKISKHHLPAGELVSSYNIALRSAALTDLSTAESRWRLLVCPSLKPNLPIPEVRVDIVK 2862
RVL+DVEASLNEGALTL+N +PCLRIIFD+ A+ +K+KT+W+LELGLGALQAFGL G RATTL+TRRTWRP + GG MIQIGDFQVWKSGGI VEY RS + P +G +R S + VS SA+Q D G++ G S +VV V+VV APHQ+MH+R C+ + M TRDM+LL SAAQSKISRL+R TRSSFLHA+GSS+R+EVTADIHAPLVVLP+ ++SRSSLLV+DLGHI+FRRDD R V + GD+ +A P V+ + V + GL + +A D W L + GVQVVVAD++SF G G A ++ +TAIVEE DL VK+RTA D +T+ +G V ANLPRLS N+HSSAY LL+RLLKNEL+R +A+G V++S PS+S SP R I VLA+ELEPVTE+PGE G D DG+ GA G G S+ R + SR H RRRS SGS + CG + V E E G GD GL +EVRVSAP I V LVHD S S S + A E +S S P + + VG+ G AEGAL L+EI GLG++++ + G H +G A D +Q + +F L+V SF ++DM+Q+ GD FSY LSS P S A +P EA+R+ H + E+ G+ ++T V L VW NWNPETV ALS+F +G+YG G GDXXXXXX E S + P RS + ++A+ + A V G V E GR GG ++++AE I K H G VS+Y+IAL A+LTDL T SRWR LVCPSL LP EVR+DIV+
Sbjct: 649 RVLFDVEASLNEGALTLVNAGQPCLRIIFDLKADLQKQKTDWRLELGLGALQAFGLAGQGARATTLLTRRTWRPPKADGGGDAGMIQIGDFQVWKSGGIIVEYQGEDPDNAATNKGGGRSXXXSTP-AGPARKAIASPLVSPRAVSSSGGDGGGVSADQADSAGRWGGGG-SGAVVTVKVVFAPHQLMHNRACVDQVTSMFATRDMRLLASAAQSKISRLKRATRSSFLHALGSSKRVEVTADIHAPLVVLPEDLEDRSRSSLLVLDLGHIAFRRDDALRRDAVETPP-----GDSPLASPPVFDVDVPSSSVEGVSAPGLLTADPLVANVPEDIAQDDWLLDVTGVQVVVADASSFLGPASSDNGPSANKAALSNDTAIVEEVDLNVKVRTATDLSTNGLIGVRVEANLPRLSCNVHSSAYLLLTRLLKNELERPTTAAGADRFPPESPLVSSSREEERMTRVPQTGTRGAVASRLFPASATPSLSPGSPGGTQRPRLIKAVLASELEPVTEVPGE---GPLEDSDDGVGGA----GVGRAGVFSLTPRRNSLSRGHHRRRSSSGSGCIHSPMPVEDSGCGGGQGV--EGSERVVGDAGDGGDRVEEGYLEQPQ-----------------TPAAGLVLEVRVSAPVICVSLVHDDNSTSTSGGNHASGNGAPE---RSATTSSPARHIVRGGPESENRVGRPXXXXXXXXXXXXXXXXEEGESGLPGVRLAAPPPVGASETVAEGALVLLEICGLGVDYRDAVGGDGHGSGGRAVVDADATKQEDRNPAVEPPSKGDPPGADADGNGDSPCKFCLSVSSFRVKDMHQRLTGDAGFSYLLSSQDPSSSAPLPLLLPEE---EALRITYHTLGEKRTGGDRSGSRTVVVLGGVWGNWNPETVGALSVFTYGMYGSSGGGGTAPEIGDXXXXXXRPNAEQGKVDERSG----RGVPSPRSEDLPSSASGRSIPEQAGVQAETQAERTGAA----EPVSAEKGRR--------GGA--IIVKAE-----IFKCHHSEGS-VSNYSIALGFASLTDLGTKHSRWRSLVCPSLDSTLPPQEVRLDIVQ 1669
BLAST of mRNA_H-paniculata_contig2703.7397.1 vs. uniprot
Match: A0A6H5K6C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C3_9PHAE) HSP 1 Score: 213 bits (541), Expect = 1.170e-53 Identity = 128/239 (53.56%), Postives = 154/239 (64.44%), Query Frame = 1
Query: 1 RVLWDVEASLNEGALTLINGEKPCLRIIFDVMAEFKKKKTNWKLELGLGALQAFGLGEAGGRATTLITRRTWRPHEVAAGGAEQMIQIGDFQVWKSGGITVEY-RSDSENIPDS-GTSRSTQEVSQESAEQVDQPGQYFRGIISSS---------------------------VVLVRVVLAPHQVMHSRVCL---SCMLGTRDMQLLTSAAQSKISRLQRTTRSSFLHAIGSSQRLEV 621
RVL+DVEASLNEGALTL+N +PCLRIIFD+ A+ K+KT+W+LELGLGALQAFGL G RATTL+TRRTWRP + GG MIQIGDFQVWKSGGI VEY R D +N + G RS+ A + +S VV V+VV APHQ+MH+R C+ + M TRDM+LL SAAQSKISRL+R TRSSF+HA+GSS+R+EV
Sbjct: 629 RVLFDVEASLNEGALTLVNAGQPCLRIIFDLKADLVKQKTDWRLELGLGALQAFGLAGQGARATTLLTRRTWRPPKAVGGGDAGMIQIGDFQVWKSGGIIVEYQRVDPDNAASNEGGGRSSSSTPAGPARKALASPLVSPRAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVTVKVVFAPHQLMHNRPCVDQVTSMFATRDMRLLASAAQSKISRLKRATRSSFMHALGSSKRVEV 867
BLAST of mRNA_H-paniculata_contig2703.7397.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 167 bits (424), Expect = 2.210e-38 Identity = 205/613 (33.44%), Postives = 269/613 (43.88%), Query Frame = 1
Query: 1291 SLSPSAEARDWR---IATVLATELEPVTEIPGEESPGYETDDVDGMLGASATAGSGGGARG--SINARHRN-SRWHRRRRSGSGSS----------AHCGVAEEVRSENEEHGRGGRGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVAGEGLTVEVRVSAPFISVLLVHDAGLLSPSVS---------------PPLSPSSAV----EEKNQSIGASMPD---------DIDG----------KMAVGK-GRQRAT-AEGALALIEIHGLGIEFQK--------SPGRHPTGVVAENGLDNPRQLQHQQXXXXXXQRIQ-------QFVLNVMSFHIQDMYQQA-GDK-FSYFLSSSKPPSPARSYAAIPVVSAAEAVRVA-HVIPER--GETGP-AKTTVALSEVWMNWNPETVAALSIFAHGIYGERDG----QQGVDGSGDXXXXXXXXXXXPTSGGE---SSSLQPVKASPGG---RSREPTAAAAHERLGAA--ACVDVGGXXXXDGVKMKRDSVVLIEIGRVSLCLNKEIGGRRLLLLEAEDSTVKISKHHLPAGELVSSYNIALRSAALTDLSTAESRWRLLVCPSLKPNLPIPEVRVDIVK 2862
SLSP + R + VLA+ELEPVTE+PGE P +D DG +G G G G G S+ R + SR H R RS GS + CG + V G G G GL +EVRVSAP I V LVHD SPS S SP+ + E +G P DG ++A + GR T AEGAL L+EI GLG++++ S GR A D ++ F L+V SF ++DM+Q+ GD FSY LSS P S A +P EA+R+ H + E+ G+ G ++T V L VW NWNPETV AL++F +G+YG G + DG G+ + G S + + +S G E A ER GAA A + G KR V++ ++ RVSL LNKE+ GRRLLLLEA +S+ +I K+H G VS+Y+IAL SA+LT+L T SRWR LVCPSL LP EVR+DI++
Sbjct: 403 SLSPGSPGETQRPRLVKAVLASELEPVTEVPGEGPP----EDSDGGVG-----GEGVGRAGVFSLTPRRNSLSRGHHRSRSIPGSGCMHSPMLVEDSGCGGGQGVEGAERVVGEAGDGGDRDEEGYLEQPQ-------------------APDAGLVLEVRVSAPVICVSLVHDDN--SPSTSGGNHASGNGAPQRSATTFSPARHIVGGGPENENRVGRPPPSKGGAGHAAVSCDGGRGGFGLPGVRLAAPQPGRASETVAEGALVLLEICGLGVDYRDAVGGGDRCSGGRAIADADATKQDDGNPAVEPPSKGDPPGADANVDDDSPCMFCLSVSSFRVKDMHQRVTGDAGFSYLLSSQDPSSSASLPLLLPEE---EALRITYHTLAEKRAGDGGSGSRTVVVLGGVWGNWNPETVGALAVFTYGMYGNSGGGGTAPETGDGGGEGGRPNAEEGKVENNSGRGVPSPRSEGLPSSARGSIPEQAEVEAGKRAERTGAAEPASAETG----------KRGGVIIAKVKRVSLWLNKEVHGRRLLLLEARESSAEIFKYHHSDGS-VSNYSIALGSASLTNLGTKHSRWRSLVCPSLDSTLPPQEVRLDIIQ 971 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2703.7397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2703.7397.1 >prot_H-paniculata_contig2703.7397.1 ID=prot_H-paniculata_contig2703.7397.1|Name=mRNA_H-paniculata_contig2703.7397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=964bp RVLWDVEASLNEGALTLINGEKPCLRIIFDVMAEFKKKKTNWKLELGLGAback to top mRNA from alignment at H-paniculata_contig2703:1706..18732+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2703.7397.1 ID=mRNA_H-paniculata_contig2703.7397.1|Name=mRNA_H-paniculata_contig2703.7397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17027bp|location=Sequence derived from alignment at H-paniculata_contig2703:1706..18732+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2703:1706..18732+ >mRNA_H-paniculata_contig2703.7397.1 ID=mRNA_H-paniculata_contig2703.7397.1|Name=mRNA_H-paniculata_contig2703.7397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5784bp|location=Sequence derived from alignment at H-paniculata_contig2703:1706..18732+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |