prot_H-paniculata_contig27023.7395.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig27023.7395.1
Unique Nameprot_H-paniculata_contig27023.7395.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length45
Homology
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A8F0FDK0_9PHAE (Cytochrome b n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDK0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-18
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 45
            MDPRKHL WSGCL+YVLMM TAFI YVLPWGAM FWG+T+ITSM+
Sbjct:  107 MDPRKHLWWSGCLLYVLMMATAFIGYVLPWGAMSFWGLTVITSMV 151          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A0U1WNN6_SARFS (Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A0U1WNN6_SARFS)

HSP 1 Score: 74.7 bits (182), Expect = 1.550e-14
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITS 43
            M+PR+HL WSG L+YVLMM TAFI YVLPWG M FWG T+ITS
Sbjct:  107 MEPRQHLWWSGTLIYVLMMATAFIGYVLPWGQMSFWGATVITS 149          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: E6ZES8_ECTSI (Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.970e-14
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 44
            M+PR+ L WSG L+YVLMM TAFI YVLPWG M FWG T+ITS+
Sbjct:  107 MEPRQQLWWSGALIYVLMMATAFIGYVLPWGQMSFWGATVITSL 150          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: Q2TUA7_DICDH (Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID=Q2TUA7_DICDH)

HSP 1 Score: 72.0 bits (175), Expect = 1.320e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 44
            M+PR+ L WSG ++YVLMM TAFI YVLPWG M FWGVT+IT++
Sbjct:  107 MEPRQSLWWSGAIIYVLMMATAFIGYVLPWGQMSFWGVTVITNL 150          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: D0IPB5_SACJA (Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepID=D0IPB5_SACJA)

HSP 1 Score: 70.5 bits (171), Expect = 4.750e-13
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 44
            M+PR+ L WSG ++YVLMM TAFI YVLPWG M FWG T+ITS+
Sbjct:  107 MEPRQQLWWSGGVIYVLMMATAFIGYVLPWGQMSFWGATVITSL 150          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A8E8PEC1_9PHAE (Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEC1_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.890e-13
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 44
            M+PR+ L WSG ++Y+LMM TAFI YVLPWG M FWG T+ITS+
Sbjct:  107 MEPRQQLWWSGGVIYILMMATAFIGYVLPWGQMSFWGATVITSL 150          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A8F0FCD4_9PHAE (Cytochrome b n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0FCD4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.170e-12
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 44
            M PR  L WSG ++YVLMM TAFI YVLPWG M FWG T+ITS+
Sbjct:  107 MAPRHQLWWSGGVIYVLMMATAFIGYVLPWGQMSFWGATVITSL 150          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A8A3SMD4_9STRA (Cytochrome b n=2 Tax=Pleurosigma TaxID=197752 RepID=A0A8A3SMD4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.320e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 45
            M PR+HL  SG L++VLMMGTAF  YVLPWG M FWG T+ITS++
Sbjct:  111 MAPREHLWCSGVLLFVLMMGTAFTGYVLPWGQMSFWGATVITSLV 155          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A1DZE1_SKECO (Cytochrome b (Fragment) n=2 Tax=Skeletonema TaxID=2842 RepID=A1DZE1_SKECO)

HSP 1 Score: 65.5 bits (158), Expect = 1.290e-11
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 45
            M PR+ L  SG L+++LMMGTAF+ YVLPWG M FWG T+ITS++
Sbjct:   80 MQPRQLLWCSGVLIFILMMGTAFMGYVLPWGQMSFWGATVITSLV 124          
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A1Q1NJ55_9STRA (Cytochrome b (Fragment) n=1 Tax=Cymatopleura elliptica TaxID=303462 RepID=A0A1Q1NJ55_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    1 MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 45
            M+PR+++  SG ++ +LMMGTAF  YVLPWG M FWG T+ITSM+
Sbjct:   34 MEPRQYIWCSGVILLLLMMGTAFTGYVLPWGQMSFWGATVITSMV 78          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FDK0_9PHAE1.340e-1882.22Cytochrome b n=1 Tax=Protohalopteris sp. TaxID=284... [more]
A0A0U1WNN6_SARFS1.550e-1474.42Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A... [more]
E6ZES8_ECTSI6.970e-1470.45Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepI... [more]
Q2TUA7_DICDH1.320e-1368.18Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID... [more]
D0IPB5_SACJA4.750e-1368.18Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A8E8PEC1_9PHAE6.890e-1365.91Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=224924... [more]
A0A8F0FCD4_9PHAE3.170e-1268.18Cytochrome b n=1 Tax=Laminaria ephemera TaxID=3093... [more]
A0A8A3SMD4_9STRA4.320e-1266.67Cytochrome b n=2 Tax=Pleurosigma TaxID=197752 RepI... [more]
A1DZE1_SKECO1.290e-1162.22Cytochrome b (Fragment) n=2 Tax=Skeletonema TaxID=... [more]
A0A1Q1NJ55_9STRA2.090e-1160.00Cytochrome b (Fragment) n=1 Tax=Cymatopleura ellip... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 4..45
e-value: 2.5E-10
score: 40.5
IPR005797Cytochrome b/b6, N-terminalPROSITEPS51002CYTB_NTERcoord: 1..45
score: 9.028
IPR027387Cytochrome b/b6-like domain superfamilyGENE3D1.20.810.10coord: 1..45
e-value: 7.7E-11
score: 43.3
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 2..44
NoneNo IPR availablePANTHERPTHR19271:SF19coord: 2..44
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..38
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILY81342Transmembrane di-heme cytochromescoord: 8..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27023contigH-paniculata_contig27023:1779..1913 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27023.7395.1mRNA_H-paniculata_contig27023.7395.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig27023 1675..1913 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig27023.7395.1 ID=prot_H-paniculata_contig27023.7395.1|Name=mRNA_H-paniculata_contig27023.7395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005797Cyt_b/b6_N
IPR027387Cytb/b6-like_sf
IPR016174Di-haem_cyt_TM