mRNA_H-paniculata_contig27023.7395.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27023.7395.1
Unique NamemRNA_H-paniculata_contig27023.7395.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A8F0FDK0_9PHAE (Cytochrome b n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FDK0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 8.050e-28
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 3 
Query:   51 FFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 239
            FFIVV CHIF G Y+GSFMDPRKHL WSGCL+YVLMM TAFI YVLPWGAM FWG+T+ITSM+
Sbjct:   89 FFIVVYCHIFRGFYYGSFMDPRKHLWWSGCLLYVLMMATAFIGYVLPWGAMSFWGLTVITSMV 151
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BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: Q2TUA7_DICDH (Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID=Q2TUA7_DICDH)

HSP 1 Score: 95.9 bits (237), Expect = 1.090e-21
Identity = 43/62 (69.35%), Postives = 52/62 (83.87%), Query Frame = 3 
Query:   51 FFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 236
            FFIVV  HIF G+Y+GSFM+PR+ L WSG ++YVLMM TAFI YVLPWG M FWGVT+IT++
Sbjct:   89 FFIVVYAHIFRGLYYGSFMEPRQSLWWSGAIIYVLMMATAFIGYVLPWGQMSFWGVTVITNL 150
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BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: E6ZES8_ECTSI (Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES8_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.510e-21
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 3 
Query:   51 FFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 236
            FFIVV  HIF G+Y+GS+M+PR+ L WSG L+YVLMM TAFI YVLPWG M FWG T+ITS+
Sbjct:   89 FFIVVYAHIFRGLYYGSYMEPRQQLWWSGALIYVLMMATAFIGYVLPWGQMSFWGATVITSL 150
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BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A0U1WNN6_SARFS (Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A0U1WNN6_SARFS)

HSP 1 Score: 95.1 bits (235), Expect = 2.760e-21
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 3 
Query:   51 FFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITS 233
            FF++V  HIF G+Y+GS+M+PR+HL WSG L+YVLMM TAFI YVLPWG M FWG T+ITS
Sbjct:   89 FFMLVYAHIFRGLYYGSYMEPRQHLWWSGTLIYVLMMATAFIGYVLPWGQMSFWGATVITS 149
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BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A1DZE1_SKECO (Cytochrome b (Fragment) n=2 Tax=Skeletonema TaxID=2842 RepID=A1DZE1_SKECO)

HSP 1 Score: 92.0 bits (227), Expect = 3.850e-21
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   48 IFFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 239
            +FFIVV CHIF G+Y+GS+M PR+ L  SG L+++LMMGTAF+ YVLPWG M FWG T+ITS++
Sbjct:   61 MFFIVVYCHIFRGLYYGSYMQPRQLLWCSGVLIFILMMGTAFMGYVLPWGQMSFWGATVITSLV 124
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BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A8E8PEC1_9PHAE (Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEC1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.100e-20
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 3 
Query:   48 IFFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 236
            +FFIVV  HIF G+Y GSFM+PR+ L WSG ++Y+LMM TAFI YVLPWG M FWG T+ITS+
Sbjct:   88 LFFIVVYAHIFRGLYFGSFMEPRQQLWWSGGVIYILMMATAFIGYVLPWGQMSFWGATVITSL 150
[Close]
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: D0IPB5_SACJA (Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepID=D0IPB5_SACJA)

HSP 1 Score: 93.2 bits (230), Expect = 1.130e-20
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 3 
Query:   51 FFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSM 236
            FFIVV  HIF G+Y+GS+M+PR+ L WSG ++YVLMM TAFI YVLPWG M FWG T+ITS+
Sbjct:   89 FFIVVYAHIFRGLYYGSYMEPRQQLWWSGGVIYVLMMATAFIGYVLPWGQMSFWGATVITSL 150
[Close]
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A1Q1NIX5_9STRA (Cytochrome b (Fragment) n=1 Tax=Campylodiscus undulatus TaxID=1949211 RepID=A0A1Q1NIX5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.910e-20
Identity = 38/64 (59.38%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   48 IFFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 239
            +FFIVV CH+F G+Y+GS+++PR+++  SG ++ +LMMGTAF  YVLPWG M FWG T+ITSM+
Sbjct:   18 MFFIVVYCHLFRGLYYGSYIEPRQYIWCSGVIILLLMMGTAFTGYVLPWGQMSFWGATVITSMV 81
[Close]
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A0S2M9R5_9STRA (Cytochrome b n=10 Tax=Thalassiosirales TaxID=33847 RepID=A0A0S2M9R5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.080e-20
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   48 IFFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 239
            +FFIVV CHIF G+Y+GS+M PR+ L  SG L+++LMMGTAF+ YVLPWG M FWG T+ITS++
Sbjct:   95 MFFIVVYCHIFRGLYYGSYMQPRQLLWCSGVLIFILMMGTAFMGYVLPWGQMSFWGATVITSLV 158
[Close]
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Match: A0A8A6KML1_9STRA (Cytochrome b n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A8A6KML1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.830e-20
Identity = 40/64 (62.50%), Postives = 53/64 (82.81%), Query Frame = 3 
Query:   48 IFFIVV*CHIFWGVYHGSFMDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI 239
            +FFIVV CHIF G+Y+GS+M PR+ L  SG ++++LMMGTAF+ YVLPWG M FWG T+ITS++
Sbjct:   95 MFFIVVYCHIFRGLYYGSYMQPRQLLWCSGVIIFILMMGTAFMGYVLPWGQMSFWGATVITSLV 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27023.7395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FDK0_9PHAE8.050e-2880.95Cytochrome b n=1 Tax=Protohalopteris sp. TaxID=284... [more]
Q2TUA7_DICDH1.090e-2169.35Cytochrome b n=2 Tax=Dictyotaceae TaxID=2874 RepID... [more]
E6ZES8_ECTSI1.510e-2169.35Cytochrome b n=15 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A0U1WNN6_SARFS2.760e-2168.85Cytochrome b n=27 Tax=Fucales TaxID=3009 RepID=A0A... [more]
A1DZE1_SKECO3.850e-2164.06Cytochrome b (Fragment) n=2 Tax=Skeletonema TaxID=... [more]
A0A8E8PEC1_9PHAE1.100e-2066.67Cytochrome b n=1 Tax=Phaeophyceae sp. TaxID=224924... [more]
D0IPB5_SACJA1.130e-2067.74Cytochrome b n=38 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A1Q1NIX5_9STRA1.910e-2059.38Cytochrome b (Fragment) n=1 Tax=Campylodiscus undu... [more]
A0A0S2M9R5_9STRA3.080e-2064.06Cytochrome b n=10 Tax=Thalassiosirales TaxID=33847... [more]
A0A8A6KML1_9STRA5.830e-2062.50Cytochrome b n=3 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27023contigH-paniculata_contig27023:1675..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog1168059.KB899087_gene433
Preferred namepetB
KEGG koko:K00410,ko:K00412,ko:K02635,ko:K02637
KEGG Pathwayko00190,ko00195,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map00195,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152,M00162
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
EggNOG OGs1MV97@1224,2TSZ3@28211,3EYIG@335928,COG1290@1,COG1290@2
COG Functional cat.C
Best tax levelXanthobacteraceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko03029
Exons1
Model size239
Cds size135
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.2047527-UTR-H-paniculata_contig27023:1674..17781622929813.2047527-UTR-H-paniculata_contig27023:1674..1778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27023 1675..1778 +
1691481022.6078978-UTR-H-paniculata_contig27023:1674..17781691481022.6078978-UTR-H-paniculata_contig27023:1674..1778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27023 1675..1778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.2210371-CDS-H-paniculata_contig27023:1778..19131622929813.2210371-CDS-H-paniculata_contig27023:1778..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27023 1779..1913 +
1691481022.620867-CDS-H-paniculata_contig27023:1778..19131691481022.620867-CDS-H-paniculata_contig27023:1778..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27023 1779..1913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27023.7395.1prot_H-paniculata_contig27023.7395.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27023 1779..1913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27023.7395.1

>prot_H-paniculata_contig27023.7395.1 ID=prot_H-paniculata_contig27023.7395.1|Name=mRNA_H-paniculata_contig27023.7395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MDPRKHLCWSGCLVYVLMMGTAFIDYVLPWGAMIFWGVTIITSMI
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mRNA from alignment at H-paniculata_contig27023:1675..1913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27023.7395.1 ID=mRNA_H-paniculata_contig27023.7395.1|Name=mRNA_H-paniculata_contig27023.7395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=239bp|location=Sequence derived from alignment at H-paniculata_contig27023:1675..1913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAATTACGGCTGGTTAATTCGTTATCTTCATACCCATGATACTTCATT
TTCTTTATTGTGGTTTAATGTCATATTTTTTGGGGGGTTTATCATGGGTC
TTTTATGGATCCGCGTAAGCATTTATGCTGGTCAGGATGTCTTGTTTATG
TTTTAATGATGGGCACTGCTTTTATAGATTATGTGTTGCCTTGGGGTGCT
ATGATATTTTGGGGAGTAACAATAATTACAAGTATGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig27023:1675..1913+

>mRNA_H-paniculata_contig27023.7395.1 ID=mRNA_H-paniculata_contig27023.7395.1|Name=mRNA_H-paniculata_contig27023.7395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig27023:1675..1913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCGCGTAAGCATTTATGCTGGTCAGGATGTCTTGTTTATGTTTT
AATGATGGGCACTGCTTTTATAGATTATGTGTTGCCTTGGGGTGCTATGA
TATTTTGGGGAGTAACAATAATTACAAGTATGATTATGGATCCGCGTAAG
CATTTATGCTGGTCAGGATGTCTTGTTTATGTTTTAATGATGGGCACTGC
TTTTATAGATTATGTGTTGCCTTGGGGTGCTATGATATTTTGGGGAGTAA
CAATAATTACAAGTATGATT
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