mRNA_H-paniculata_contig26970.7382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI) HSP 1 Score: 121 bits (303), Expect = 2.650e-30 Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
GNIAGS V DGV++KG NVLVKRLGRI+HEGKLKTL+N+K D +MV TECGIQVEGFEDFQEGD+IECYK++
Sbjct: 944 GNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 1017
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.220e-25 Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECY 213
GNIAGS+V+DG V +GSNV + R+GR++HEG LK L+NVKADV+ MVA TECGIQV FEDFQEGD IECY
Sbjct: 507 GNIAGSEVLDGEVRRGSNVRIMRMGRVVHEGALKVLKNVKADVEAMVAGTECGIQVSDFEDFQEGDFIECY 577
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7S2Y1F3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F3_9STRA) HSP 1 Score: 100 bits (248), Expect = 7.070e-23 Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECY 213
GNIAGS V+DG V KGSNV V R GR++HE +KTL+NVK DV+EMVA TECGIQ++GFE+F+ GD+IE Y
Sbjct: 646 GNIAGSNVLDGRVKKGSNVRVMRAGRVIHETTMKTLKNVKVDVEEMVAGTECGIQLQGFEEFEVGDIIESY 716
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 3.580e-20 Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
G IAGS+V+DG V G+NV V R R++HEG + TL+N+KAD EMVA TECGI +E FEDF+EGD+IECY +
Sbjct: 650 GRIAGSEVLDGRVINGANVRVLRGPRVIHEGVMGTLKNLKADADEMVAGTECGIGLEAFEDFEEGDVIECYVV 722
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A535KLP9_9CHLR (GTP_EFTU_D2 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535KLP9_9CHLR) HSP 1 Score: 77.0 bits (188), Expect = 7.050e-17 Identity = 37/74 (50.00%), Postives = 55/74 (74.32%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
G +AGS+V++G VS+G V + R ++HEG++ +L++ K DV+EM A ECGI +EG+EDFQ GD +E Y+LE
Sbjct: 10 GVVAGSRVLEGKVSRGGWVKLFRAREMVHEGRINSLKHFKEDVREMPAGQECGIGLEGWEDFQPGDTMETYRLE 83
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7S2FAN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FAN7_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 4.860e-16 Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
G IAG V+DG V K +N V R RI+HEG+LKTL++VK DVQ M A +ECG+ + +E+ EGD+IE Y +
Sbjct: 61 GKIAGCAVLDGEVLKSANFRVLRGPRIVHEGRLKTLKHVKEDVQSMSAGSECGVNFQDWEEMMEGDIIESYVM 133
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7V3MJ49_9BACT (Translation initiation factor IF-2 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3MJ49_9BACT) HSP 1 Score: 80.1 bits (196), Expect = 4.940e-16 Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
G +AG V G V + V V R G+++H+GKL +L+++K +V+EM ECGI +EGF+DFQEGD+IECY L
Sbjct: 281 GVVAGCMVTSGKVVRNEEVRVLREGKVVHQGKLDSLKHLKEEVREMAQGFECGIHIEGFQDFQEGDIIECYTL 353
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7G8ZM55_9PROT (Translation initiation factor IF-2 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZM55_9PROT) HSP 1 Score: 80.1 bits (196), Expect = 7.700e-16 Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
G +AG +V +GVV +GS V + R ++HEGKLKTL+ K +V E+ A TECG+ E +ED Q+GD+IEC+++E
Sbjct: 781 GKVAGCRVTEGVVKRGSGVRLLRDDTVIHEGKLKTLKRFKDEVPEVRAGTECGMAFENYEDLQKGDLIECFEVE 854
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A535MED9_9CHLR (Translation initiation factor IF-2 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535MED9_9CHLR) HSP 1 Score: 79.7 bits (195), Expect = 1.040e-15 Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
GNIAGS+V+DG +S+ S V + R G+++ EG++ L+ K DV+E+ ECGIQVEGF+DFQ GD+++ Y +
Sbjct: 552 GNIAGSRVVDGKISRDSRVKISRDGQLLLEGQIVALKRFKDDVKEVTVGLECGIQVEGFQDFQTGDVLDAYLV 624
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A2V1DBB4_9PLEO (Initiation factor 2 n=1 Tax=Periconia macrospinosa TaxID=97972 RepID=A0A2V1DBB4_9PLEO) HSP 1 Score: 79.7 bits (195), Expect = 1.060e-15 Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 7 IAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
+AGSKV +G+++KGS V V R G ++++G + +L+N K DV EM D+ECG+ G+EDF+EGD ++CY+ E
Sbjct: 906 VAGSKVRNGIITKGSKVKVFRKGEVVYDGTISSLKNQKKDVVEMRKDSECGVSFAGWEDFKEGDKVQCYEEE 977 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26970.7382.1 >prot_H-paniculata_contig26970.7382.1 ID=prot_H-paniculata_contig26970.7382.1|Name=mRNA_H-paniculata_contig26970.7382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTback to top mRNA from alignment at H-paniculata_contig26970:177..733+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26970.7382.1 ID=mRNA_H-paniculata_contig26970.7382.1|Name=mRNA_H-paniculata_contig26970.7382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=557bp|location=Sequence derived from alignment at H-paniculata_contig26970:177..733+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26970:177..733+ >mRNA_H-paniculata_contig26970.7382.1 ID=mRNA_H-paniculata_contig26970.7382.1|Name=mRNA_H-paniculata_contig26970.7382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig26970:177..733+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |