mRNA_H-paniculata_contig26970.7382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26970.7382.1
Unique NamemRNA_H-paniculata_contig26970.7382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: D7FJE9_ECTSI (PTIF2, plastid translation intiation factor 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.650e-30
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
            GNIAGS V DGV++KG NVLVKRLGRI+HEGKLKTL+N+K D  +MV  TECGIQVEGFEDFQEGD+IECYK++
Sbjct:  944 GNIAGSSVEDGVINKGGNVLVKRLGRIVHEGKLKTLKNLKVDADKMVMGTECGIQVEGFEDFQEGDLIECYKMD 1017          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A835ZAQ9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.220e-25
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECY 213
            GNIAGS+V+DG V +GSNV + R+GR++HEG LK L+NVKADV+ MVA TECGIQV  FEDFQEGD IECY
Sbjct:  507 GNIAGSEVLDGEVRRGSNVRIMRMGRVVHEGALKVLKNVKADVEAMVAGTECGIQVSDFEDFQEGDFIECY 577          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7S2Y1F3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.070e-23
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECY 213
            GNIAGS V+DG V KGSNV V R GR++HE  +KTL+NVK DV+EMVA TECGIQ++GFE+F+ GD+IE Y
Sbjct:  646 GNIAGSNVLDGRVKKGSNVRVMRAGRVIHETTMKTLKNVKVDVEEMVAGTECGIQLQGFEEFEVGDIIESY 716          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7S3Y8J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8J2_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 3.580e-20
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
            G IAGS+V+DG V  G+NV V R  R++HEG + TL+N+KAD  EMVA TECGI +E FEDF+EGD+IECY +
Sbjct:  650 GRIAGSEVLDGRVINGANVRVLRGPRVIHEGVMGTLKNLKADADEMVAGTECGIGLEAFEDFEEGDVIECYVV 722          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A535KLP9_9CHLR (GTP_EFTU_D2 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535KLP9_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 7.050e-17
Identity = 37/74 (50.00%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
            G +AGS+V++G VS+G  V + R   ++HEG++ +L++ K DV+EM A  ECGI +EG+EDFQ GD +E Y+LE
Sbjct:   10 GVVAGSRVLEGKVSRGGWVKLFRAREMVHEGRINSLKHFKEDVREMPAGQECGIGLEGWEDFQPGDTMETYRLE 83          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7S2FAN7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FAN7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.860e-16
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
            G IAG  V+DG V K +N  V R  RI+HEG+LKTL++VK DVQ M A +ECG+  + +E+  EGD+IE Y +
Sbjct:   61 GKIAGCAVLDGEVLKSANFRVLRGPRIVHEGRLKTLKHVKEDVQSMSAGSECGVNFQDWEEMMEGDIIESYVM 133          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7V3MJ49_9BACT (Translation initiation factor IF-2 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3MJ49_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 4.940e-16
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
            G +AG  V  G V +   V V R G+++H+GKL +L+++K +V+EM    ECGI +EGF+DFQEGD+IECY L
Sbjct:  281 GVVAGCMVTSGKVVRNEEVRVLREGKVVHQGKLDSLKHLKEEVREMAQGFECGIHIEGFQDFQEGDIIECYTL 353          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A7G8ZM55_9PROT (Translation initiation factor IF-2 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZM55_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 7.700e-16
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
            G +AG +V +GVV +GS V + R   ++HEGKLKTL+  K +V E+ A TECG+  E +ED Q+GD+IEC+++E
Sbjct:  781 GKVAGCRVTEGVVKRGSGVRLLRDDTVIHEGKLKTLKRFKDEVPEVRAGTECGMAFENYEDLQKGDLIECFEVE 854          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A535MED9_9CHLR (Translation initiation factor IF-2 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535MED9_9CHLR)

HSP 1 Score: 79.7 bits (195), Expect = 1.040e-15
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKL 219
            GNIAGS+V+DG +S+ S V + R G+++ EG++  L+  K DV+E+    ECGIQVEGF+DFQ GD+++ Y +
Sbjct:  552 GNIAGSRVVDGKISRDSRVKISRDGQLLLEGQIVALKRFKDDVKEVTVGLECGIQVEGFQDFQTGDVLDAYLV 624          
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Match: A0A2V1DBB4_9PLEO (Initiation factor 2 n=1 Tax=Periconia macrospinosa TaxID=97972 RepID=A0A2V1DBB4_9PLEO)

HSP 1 Score: 79.7 bits (195), Expect = 1.060e-15
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    7 IAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADTECGIQVEGFEDFQEGDMIECYKLE 222
            +AGSKV +G+++KGS V V R G ++++G + +L+N K DV EM  D+ECG+   G+EDF+EGD ++CY+ E
Sbjct:  906 VAGSKVRNGIITKGSKVKVFRKGEVVYDGTISSLKNQKKDVVEMRKDSECGVSFAGWEDFKEGDKVQCYEEE 977          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26970.7382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJE9_ECTSI2.650e-3077.03PTIF2, plastid translation intiation factor 2 n=2 ... [more]
A0A835ZAQ9_9STRA1.220e-2571.83P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2Y1F3_9STRA7.070e-2367.61Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S3Y8J2_HETAK3.580e-2061.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A535KLP9_9CHLR7.050e-1750.00GTP_EFTU_D2 domain-containing protein n=1 Tax=Chlo... [more]
A0A7S2FAN7_9STRA4.860e-1652.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7V3MJ49_9BACT4.940e-1650.68Translation initiation factor IF-2 n=1 Tax=Armatim... [more]
A0A7G8ZM55_9PROT7.700e-1650.00Translation initiation factor IF-2 n=3 Tax=Alphapr... [more]
A0A535MED9_9CHLR1.040e-1549.32Translation initiation factor IF-2 n=1 Tax=Chlorof... [more]
A0A2V1DBB4_9PLEO1.060e-1548.61Initiation factor 2 n=1 Tax=Periconia macrospinosa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26970contigH-paniculata_contig26970:177..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D7FJE9
KEGG koko:K02519
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1145@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons2
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.9069252-CDS-H-paniculata_contig26970:176..3411622929810.9069252-CDS-H-paniculata_contig26970:176..341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26970 177..341 +
1691481021.3969347-CDS-H-paniculata_contig26970:176..3411691481021.3969347-CDS-H-paniculata_contig26970:176..341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26970 177..341 +
1622929810.919058-CDS-H-paniculata_contig26970:673..7331622929810.919058-CDS-H-paniculata_contig26970:673..733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26970 674..733 +
1691481021.4104793-CDS-H-paniculata_contig26970:673..7331691481021.4104793-CDS-H-paniculata_contig26970:673..733Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26970 674..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26970.7382.1prot_H-paniculata_contig26970.7382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26970 177..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26970.7382.1

>prot_H-paniculata_contig26970.7382.1 ID=prot_H-paniculata_contig26970.7382.1|Name=mRNA_H-paniculata_contig26970.7382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
GNIAGSKVIDGVVSKGSNVLVKRLGRIMHEGKLKTLRNVKADVQEMVADT
ECGIQVEGFEDFQEGDMIECYKLE*
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mRNA from alignment at H-paniculata_contig26970:177..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26970.7382.1 ID=mRNA_H-paniculata_contig26970.7382.1|Name=mRNA_H-paniculata_contig26970.7382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=557bp|location=Sequence derived from alignment at H-paniculata_contig26970:177..733+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTAACATCGCCGGTAGCAAGGTGATTGATGGCGTGGTGAGCAAGGGCTC GAACGTGTTGGTGAAGCGACTGGGCCGCATTATGCACGAGGGCAAATTGA AGACACTGAGGAACGTCAAGGCCGATGTGCAGGAGATGGTCGCGGACACG GAGTGTGGTATTCAGGTGTGTGTGTGTGTGTGTGTGTGTGCTCGTGGCTC GTGTGTGTGCTCGTGTGCGTGTGCTCGTGTGCGTGTTACGACAAGTTTGA CAGTACTATGTTTAGCATGAGCAATTTTCTCTTCAACCTGTTCTAATGTT TTTGACATCGCGAACCAATCGCAAAGATCGAAGTCAACCGTTGGTTGTTT CCACAGGAAGATGAGAGTTTCCCCCGATCTTTTCGGATTCTCATACGTCG TCCTGTTGCCCCCTTGTTGATCTAAATATGCGCACAAGTGTTCTCAACAC CCTCCCCATGTTTTCGTCTTTTTGGTCGTTGCGTTGTCTTCGAATAGGTG GAAGGATTCGAAGACTTCCAAGAGGGCGACATGATCGAGTGCTACAAACT TGAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig26970:177..733+

>mRNA_H-paniculata_contig26970.7382.1 ID=mRNA_H-paniculata_contig26970.7382.1|Name=mRNA_H-paniculata_contig26970.7382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig26970:177..733+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTAACATCGCCGGTAGCAAGGTGATTGATGGCGTGGTGAGCAAGGGCTC
GAACGTGTTGGTGAAGCGACTGGGCCGCATTATGCACGAGGGCAAATTGA
AGACACTGAGGAACGTCAAGGCCGATGTGCAGGAGATGGTCGCGGACACG
GAGTGTGGTATTCAGGGTAACATCGCCGGTAGCAAGGTGATTGATGGCGT
GGTGAGCAAGGGCTCGAACGTGTTGGTGAAGCGACTGGGCCGCATTATGC
ACGAGGGCAAATTGAAGACACTGAGGAACGTCAAGGCCGATGTGCAGGAG
ATGGTCGCGGACACGGAGTGTGGTATTCAGGTGGAAGGATTCGAAGACTT
CCAAGAGGGCGACATGATCGAGTGCTACAAACTTGAGTAGGTGGAAGGAT
TCGAAGACTTCCAAGAGGGCGACATGATCGAGTGCTACAAACTTGAGTAG
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