mRNA_H-paniculata_contig26924.7366.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26924.7366.1
Unique NamemRNA_H-paniculata_contig26924.7366.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.050e-37
Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAY 411
            R+V D+RAAN QVE+VP   PN E    Q    K + +LDLLQ YWQCPLA +AQE+F I T  GL+TP RVPQG++N T+YFQ  +  +L+GL    C V+VDD V W  D+ +LL  LDL+L+RL   GL+ AA+
Sbjct:  811 RLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAH 944          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.140e-33
Identity = 70/137 (51.09%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAY 411
            R+  DY  AN Q E+VP   P+ E       G   F  LDLLQGYWQ PLAE A+E+F I T  GLF PTRVPQ V+N T YFQ +M  +L+GL    C V+VDD + W  DE +LL  LD +L RL   G+FAAA+
Sbjct:  464 RLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAH 597          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.660e-32
Identity = 65/137 (47.45%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAY 411
            R V D+RA N Q+E+ P P P+LE   Q+      + +LD+LQGYW  PLA +AQE+F ++   GL++P RVPQGV+N T+Y+Q  M ++L  L    C+V+VDD V W E E +LL  LDL+L R    GLF AA+
Sbjct:  713 RFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAH 846          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.100e-29
Identity = 65/132 (49.24%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
            R++ D+RAAN QVE+VP   PN E    QF   K   +LDLL+ Y Q PL+ +AQ++F I T RGL TP RVPQG++N T+YFQ  +  +LEGL    CLV+VD  V    +E +LL  LD+++ERL   GL
Sbjct:  592 RLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGL 720          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A2P4YLW7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLW7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.100e-26
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVG 393
            R  +DYR  NA  E +    P++E   +   G K +   D L+G+WQ PL E+++E    +TD+G+FTPTRVPQG  +   +FQ M+  VL  LVG C +V++DD +++AE + ELL  +D VL++    G
Sbjct:   49 RQTVDYRPTNAMTEPIAGVMPSIEVALEHCRGKKYYALFDFLKGFWQLPLHENSREYLSYMTDKGVFTPTRVPQGSTDAALHFQSMVQMVLGELVGKCVIVWIDDLLVFAETQSELLDVIDAVLQKFDEYG 179          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6A4G9J9_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G9J9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.010e-25
Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
            R+  DYR  N     + A  PNL  +  +  G +A    D+ +G+WQ PLAED+QE+F I TD G++TPTRVPQG V++  +FQ  +  V   ++ H  LVYVDD VL+A    E L  L+    RL    L
Sbjct:  658 RLTTDYRPVNRMTVPIAAAVPNLAVVTGRVRGAQAMAKFDMFKGFWQLPLAEDSQEIFSIKTDEGVYTPTRVPQGAVDSAMHFQSTLQEVFGDMMNHNLLVYVDDVVLYAPTHDEFLVVLEKFFRRLRESNL 789          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6A3FJ70_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FJ70_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.930e-25
Identity = 55/132 (41.67%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
            R+  DYR  N     + A  PNL  +  +  G +A    D+ +G+WQ PL ED+QE+F I TD G++TPTRVPQG V++  +FQ  M  V   ++ H  LVYVDD VL+A    E L  L+    RL    L
Sbjct:  146 RLTTDYRPVNRMTVPIAAAVPNLVVVTSRVRGAQAMAKFDMFKGFWQLPLDEDSQEIFSIKTDEGVYTPTRVPQGAVDSAMHFQSTMQEVFGDMMNHNLLVYVDDVVLYAPTHDEFLVVLEKFFRRLRESNL 277          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.010e-25
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVG 393
            R  +DYR  NA  E +    P++E   +   G K +   D L+G+WQ P  E+++E    +T++G+FTPTRVPQG  +   +FQ  +  VL  LVG C +V++DD +++AE + ELL  +D VL++L   G
Sbjct:  246 RQTVDYRPINAITEPIAGVMPSIEVALEHCRGKKYYALFDFLKGFWQLPFHENSREYLSYMTNKGVFTPTRVPQGSTDADLHFQSTVQMVLRELVGKCVIVWIDDLLVFAETQSELLDAIDAVLQKLDEYG 376          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A2P4XIX6_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIX6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.810e-24
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   10 IDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERL 381
            +DYR ANA  E +    P++E   +   G   +   D L+G+WQ PL E  +E    +TD+G+FTPTRVPQG  +   +FQ  +  VL  LVG C +V++DD +++AE   +L+  +D +L++L
Sbjct:  590 VDYRPANALTEPIAGVMPSIEVALEHCRGKAFYALFDFLKGFWQLPLHESCREFLSYMTDKGVFTPTRVPQGSTDAALHFQSTVEMVLGDLVGKCVIVWIDDLLVFAESADQLVESIDAILQKL 713          
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A225V663_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V663_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.020e-23
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
            R+  DYR  N     + A  PNL  +  +  G KAF   DL  G+WQ P AE++QE+F I TD G++TPTRVP G V++  +FQ  M      ++    LVYVDD VL+A  + E L  LD+   +L    L
Sbjct:  387 RLATDYRPVNRMTVPIAAAVPNLVVVTSRVRGAKAFAKFDLFNGFWQMPSAENSQEIFSIKTDEGVYTPTRVPWGAVDSAMHFQSTMQEGFGDMMNQNLLVYVDDVVLYAPTDEEFLVVLDMFFWQLRECNL 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE2.050e-3752.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE4.140e-3351.09CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L7F6_9PHAE3.660e-3247.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK9_9PHAE3.100e-2949.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4YLW7_9STRA2.100e-2640.46Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A4G9J9_9STRA1.010e-2541.67Reverse transcriptase domain-containing protein n=... [more]
A0A6A3FJ70_9STRA1.930e-2541.67Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A2P4YJ51_9STRA9.010e-2538.93Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A2P4XIX6_9STRA7.810e-2438.71Reverse transcriptase domain-containing protein n=... [more]
A0A225V663_9STRA1.020e-2340.91Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26924contigH-paniculata_contig26924:1605..2018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue7.7e-25
Seed eggNOG ortholog67593.Physo138264
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.938865-CDS-H-paniculata_contig26924:1604..20151622929808.938865-CDS-H-paniculata_contig26924:1604..2015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26924 1605..2015 -
1691481020.4859676-CDS-H-paniculata_contig26924:1604..20151691481020.4859676-CDS-H-paniculata_contig26924:1604..2015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26924 1605..2015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.9678078-UTR-H-paniculata_contig26924:2015..20181622929808.9678078-UTR-H-paniculata_contig26924:2015..2018Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26924 2016..2018 -
1691481020.497209-UTR-H-paniculata_contig26924:2015..20181691481020.497209-UTR-H-paniculata_contig26924:2015..2018Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26924 2016..2018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26924.7366.1prot_H-paniculata_contig26924.7366.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26924 1605..2015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26924.7366.1

>prot_H-paniculata_contig26924.7366.1 ID=prot_H-paniculata_contig26924.7366.1|Name=mRNA_H-paniculata_contig26924.7366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLA
EDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLV
YVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAY*
back to top

mRNA from alignment at H-paniculata_contig26924:1605..2018-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26924.7366.1 ID=mRNA_H-paniculata_contig26924.7366.1|Name=mRNA_H-paniculata_contig26924.7366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at H-paniculata_contig26924:1605..2018- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATGGTGATCGACTACCGGGCCGCCAACGCGCAGGTGGAGCAGGTGCC CGCCCCAACGCCAAATCTGGAGCACATTGCGCAGCAGTTCGTGGGGGTCA AGGCGTTCTGCACCCTCGATCTTCTGCAGGGGTACTGGCAATGCCCGCTC GCTGAGGATGCCCAGGAGCTGTTCAAGATTGTCACGGACCGGGGACTGTT CACCCCCACCCGCGTGCCGCAGGGGGTGGTGAATACAACCGCCTACTTCC AAGAGATGATGGGGACGGTGCTGGAAGGCCTGGTTGGACACTGCTGCCTT GTCTACGTCGACGATGGGGTGTTGTGGGCCGAGGATGAGGGGGAGCTGCT GAGACGCCTCGACCTGGTTCTGGAGCGATTGATGGCCGTGGGGCTGTTCG CGGCGGCGTACTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26924:1605..2018-

>mRNA_H-paniculata_contig26924.7366.1 ID=mRNA_H-paniculata_contig26924.7366.1|Name=mRNA_H-paniculata_contig26924.7366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig26924:1605..2018- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGATCGACTACCGGGCCGCCAACGCGCAGGTGGAGCAGGTGCCCGC
CCCAACGCCAAATCTGGAGCACATTGCGCAGCAGTTCGTGGGGGTCAAGG
CGTTCTGCACCCTCGATCTTCTGCAGGGGTACTGGCAATGCCCGCTCGCT
GAGGATGCCCAGGAGCTGTTCAAGATTGTCACGGACCGGGGACTGTTCAC
CCCCACCCGCGTGCCGCAGGGGGTGGTGAATACAACCGCCTACTTCCAAG
AGATGATGGGGACGGTGCTGGAAGGCCTGGTTGGACACTGCTGCCTTGTC
TACGTCGACGATGGGGTGTTGTGGGCCGAGGATGAGGGGGAGCTGCTGAG
ACGCCTCGACCTGGTTCTGGAGCGATTGATGGCCGTGGGGCTGTTCGCGG
CGGCGTACTAAATGGTGATCGACTACCGGGCCGCCAACGCGCAGGTGGAG
CAGGTGCCCGCCCCAACGCCAAATCTGGAGCACATTGCGCAGCAGTTCGT
GGGGGTCAAGGCGTTCTGCACCCTCGATCTTCTGCAGGGGTACTGGCAAT
GCCCGCTCGCTGAGGATGCCCAGGAGCTGTTCAAGATTGTCACGGACCGG
GGACTGTTCACCCCCACCCGCGTGCCGCAGGGGGTGGTGAATACAACCGC
CTACTTCCAAGAGATGATGGGGACGGTGCTGGAAGGCCTGGTTGGACACT
GCTGCCTTGTCTACGTCGACGATGGGGTGTTGTGGGCCGAGGATGAGGGG
GAGCTGCTGAGACGCCTCGACCTGGTTCTGGAGCGATTGATGGCCGTGGG
GCTGTTCGCGGCGGCGTACTAA
back to top