mRNA_H-paniculata_contig26924.7366.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 144 bits (364), Expect = 2.050e-37 Identity = 72/137 (52.55%), Postives = 93/137 (67.88%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAY 411
R+V D+RAAN QVE+VP PN E Q K + +LDLLQ YWQCPLA +AQE+F I T GL+TP RVPQG++N T+YFQ + +L+GL C V+VDD V W D+ +LL LDL+L+RL GL+ AA+
Sbjct: 811 RLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAH 944
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.140e-33 Identity = 70/137 (51.09%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAY 411
R+ DY AN Q E+VP P+ E G F LDLLQGYWQ PLAE A+E+F I T GLF PTRVPQ V+N T YFQ +M +L+GL C V+VDD + W DE +LL LD +L RL G+FAAA+
Sbjct: 464 RLGNDYLRANLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAH 597
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.660e-32 Identity = 65/137 (47.45%), Postives = 89/137 (64.96%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAY 411
R V D+RA N Q+E+ P P P+LE Q+ + +LD+LQGYW PLA +AQE+F ++ GL++P RVPQGV+N T+Y+Q M ++L L C+V+VDD V W E E +LL LDL+L R GLF AA+
Sbjct: 713 RFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAH 846
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE) HSP 1 Score: 121 bits (303), Expect = 3.100e-29 Identity = 65/132 (49.24%), Postives = 86/132 (65.15%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
R++ D+RAAN QVE+VP PN E QF K +LDLL+ Y Q PL+ +AQ++F I T RGL TP RVPQG++N T+YFQ + +LEGL CLV+VD V +E +LL LD+++ERL GL
Sbjct: 592 RLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGVVNRGMEEDDLLNTLDMIVERLDGAGL 720
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A2P4YLW7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLW7_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.100e-26 Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVG 393
R +DYR NA E + P++E + G K + D L+G+WQ PL E+++E +TD+G+FTPTRVPQG + +FQ M+ VL LVG C +V++DD +++AE + ELL +D VL++ G
Sbjct: 49 RQTVDYRPTNAMTEPIAGVMPSIEVALEHCRGKKYYALFDFLKGFWQLPLHENSREYLSYMTDKGVFTPTRVPQGSTDAALHFQSMVQMVLGELVGKCVIVWIDDLLVFAETQSELLDVIDAVLQKFDEYG 179
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6A4G9J9_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G9J9_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.010e-25 Identity = 55/132 (41.67%), Postives = 75/132 (56.82%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
R+ DYR N + A PNL + + G +A D+ +G+WQ PLAED+QE+F I TD G++TPTRVPQG V++ +FQ + V ++ H LVYVDD VL+A E L L+ RL L
Sbjct: 658 RLTTDYRPVNRMTVPIAAAVPNLAVVTGRVRGAQAMAKFDMFKGFWQLPLAEDSQEIFSIKTDEGVYTPTRVPQGAVDSAMHFQSTLQEVFGDMMNHNLLVYVDDVVLYAPTHDEFLVVLEKFFRRLRESNL 789
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A6A3FJ70_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FJ70_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.930e-25 Identity = 55/132 (41.67%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
R+ DYR N + A PNL + + G +A D+ +G+WQ PL ED+QE+F I TD G++TPTRVPQG V++ +FQ M V ++ H LVYVDD VL+A E L L+ RL L
Sbjct: 146 RLTTDYRPVNRMTVPIAAAVPNLVVVTSRVRGAQAMAKFDMFKGFWQLPLDEDSQEIFSIKTDEGVYTPTRVPQGAVDSAMHFQSTMQEVFGDMMNHNLLVYVDDVVLYAPTHDEFLVVLEKFFRRLRESNL 277
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA) HSP 1 Score: 108 bits (270), Expect = 9.010e-25 Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVG 393
R +DYR NA E + P++E + G K + D L+G+WQ P E+++E +T++G+FTPTRVPQG + +FQ + VL LVG C +V++DD +++AE + ELL +D VL++L G
Sbjct: 246 RQTVDYRPINAITEPIAGVMPSIEVALEHCRGKKYYALFDFLKGFWQLPFHENSREYLSYMTNKGVFTPTRVPQGSTDADLHFQSTVQMVLRELVGKCVIVWIDDLLVFAETQSELLDAIDAVLQKLDEYG 376
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A2P4XIX6_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIX6_9STRA) HSP 1 Score: 105 bits (263), Expect = 7.810e-24 Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 10 IDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERL 381
+DYR ANA E + P++E + G + D L+G+WQ PL E +E +TD+G+FTPTRVPQG + +FQ + VL LVG C +V++DD +++AE +L+ +D +L++L
Sbjct: 590 VDYRPANALTEPIAGVMPSIEVALEHCRGKAFYALFDFLKGFWQLPLHESCREFLSYMTDKGVFTPTRVPQGSTDAALHFQSTVEMVLGDLVGKCVIVWIDDLLVFAESADQLVESIDAILQKL 713
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Match: A0A225V663_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V663_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.020e-23 Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 1
Query: 1 RMVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAEDAQELFKIVTDRGLFTPTRVPQGVVNTTAYFQEMMGTVLEGLVGHCCLVYVDDGVLWAEDEGELLRRLDLVLERLMAVGL 396
R+ DYR N + A PNL + + G KAF DL G+WQ P AE++QE+F I TD G++TPTRVP G V++ +FQ M ++ LVYVDD VL+A + E L LD+ +L L
Sbjct: 387 RLATDYRPVNRMTVPIAAAVPNLVVVTSRVRGAKAFAKFDLFNGFWQMPSAENSQEIFSIKTDEGVYTPTRVPWGAVDSAMHFQSTMQEGFGDMMNQNLLVYVDDVVLYAPTDEEFLVVLDMFFWQLRECNL 518 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26924.7366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26924.7366.1 >prot_H-paniculata_contig26924.7366.1 ID=prot_H-paniculata_contig26924.7366.1|Name=mRNA_H-paniculata_contig26924.7366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp MVIDYRAANAQVEQVPAPTPNLEHIAQQFVGVKAFCTLDLLQGYWQCPLAback to top mRNA from alignment at H-paniculata_contig26924:1605..2018- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26924.7366.1 ID=mRNA_H-paniculata_contig26924.7366.1|Name=mRNA_H-paniculata_contig26924.7366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at H-paniculata_contig26924:1605..2018- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26924:1605..2018- >mRNA_H-paniculata_contig26924.7366.1 ID=mRNA_H-paniculata_contig26924.7366.1|Name=mRNA_H-paniculata_contig26924.7366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig26924:1605..2018- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |