mRNA_H-paniculata_contig26814.7335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.060e-26 Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 1
Query: 1 VCSAC-----EKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 459
VC+ C + S+ P K + + L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K+FE D+ A G +IKRLRSD GGEY G+ F+++ ++ GI+ E + YTPQQN +A R RS+ +W A + W+++
Sbjct: 16 VCAGCCMGKMRGDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 185
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 112 bits (280), Expect = 1.150e-26 Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 1
Query: 1 VCSACEKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLR----IKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSIS 414
VC+ CE+ K +K+ E EPLELVHTD+ GPV+ + GG R+A+ F DD +R R VY ++ KS++L LK++ +D+ ++ ++ LRSD GGEY G F+ F +GI+Q+F Y PQ N VA +SW +S
Sbjct: 36 VCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLS 178
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3GEZ0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GEZ0_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.370e-26 Identity = 63/173 (36.42%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1 VCSAC-----EKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 459
VC+ C ++ S+ P K + ++ L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K F+ D+ A G +IKRLRSD GGEY G+ F+++ ++ GI+ E + YTPQQN +A R RSI +W A + W+++
Sbjct: 16 VCADCCMGKMREDNFSRSPEKTVK---SVGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGVDKKWWAEAVNTSAWIIN 185
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3V4F8_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V4F8_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.610e-26 Identity = 60/143 (41.96%), Postives = 90/143 (62.94%), Query Frame = 1
Query: 1 VCSAC-----EKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI 411
VC+ C ++ S+ P K + ++ L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K F+ D+ A G +IKRLRSD GGEY G+ F+++ A+ GI+ E + YTPQQN +A R RS+
Sbjct: 117 VCAGCCMGKMREDNFSRSPEKTVK---SVGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLAKQGIRHEKTVPYTPQQNGLAERMNRSL 256
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.720e-26 Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1
Query: 79 LELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI 411
L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K F+ D+ A G +IKRLRSD GGEY G+ F+++ ++ GI+ E + YTPQQN +A R RS+
Sbjct: 20 LDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERLNRSL 131
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3GJG5_9STRA (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GJG5_9STRA) HSP 1 Score: 111 bits (278), Expect = 8.840e-26 Identity = 62/173 (35.84%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1 VCSAC-----EKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 459
VC+ C ++ S+ P K + + L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K+F+ D+ A G +IKRLRSD GGEY G+ F+++ ++ GI+ E + YTPQQN +A R RS+ +W A + W+++
Sbjct: 16 VCAGCCMGKMREDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 185
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.090e-25 Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 1
Query: 79 LELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 459
L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K+FE D+ A G +IKRLRSD GGEY G+ F+++ ++ GI+ E + YTPQQN +A R RSI +W A + W+++
Sbjct: 20 LDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 161
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3GPC9_9STRA (Integrase catalytic domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GPC9_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.920e-25 Identity = 63/173 (36.42%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1 VCSAC-----EKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 459
VC+ C ++ S+ P K + + L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K+FE D+ A G +IKRLRSD GGEY G+ F+++ ++ GI+ E + YTPQQN +A R RS+ +W A + W+++
Sbjct: 67 VCAGCCMGKMREDNFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 236
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE) HSP 1 Score: 109 bits (273), Expect = 1.960e-25 Identity = 57/137 (41.61%), Postives = 82/137 (59.85%), Query Frame = 1
Query: 4 CSACEKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI 411
C AC K ++QP K E + L+L+H+D+ GP+ + GG ++ V F+DD SR +VY ++ KSE L K+FER + G ++ RLRSD GGEYI F+++ GI E S +TPQQN VA R R++
Sbjct: 88 CEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECGHKVARLRSDNGGEYISSEFQEYLKAQGIHHEMSVPHTPQQNGVAERKNRTL 224
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6G0MB21_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MB21_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.400e-25 Identity = 63/173 (36.42%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1 VCSAC-----EKEKASKQPVKNCREEWTIEPLELVHTDIAGPVD-KCFGGCRFAVIFVDDCSRMREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 459
VC+ C K+K S+ P K + + L+L+H+D+ GP+ K GGC +AV F+DD SR VY +++K+E L K F+ D+ A G +IKRLRS+ GGEY G+ F+++ ++ GI+ E + YTPQQN +A R RS+ +W A + W+++
Sbjct: 172 VCAGCCMGKMRKDKFSRSPEKTVK---SAGVLDLIHSDVMGPMQTKTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSENGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26814.7335.1 >prot_H-paniculata_contig26814.7335.1 ID=prot_H-paniculata_contig26814.7335.1|Name=mRNA_H-paniculata_contig26814.7335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp MREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQback to top mRNA from alignment at H-paniculata_contig26814:1644..2394- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26814.7335.1 ID=mRNA_H-paniculata_contig26814.7335.1|Name=mRNA_H-paniculata_contig26814.7335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=751bp|location=Sequence derived from alignment at H-paniculata_contig26814:1644..2394- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26814:1644..2394- >mRNA_H-paniculata_contig26814.7335.1 ID=mRNA_H-paniculata_contig26814.7335.1|Name=mRNA_H-paniculata_contig26814.7335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig26814:1644..2394- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |