prot_H-paniculata_contig26814.7335.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig26814.7335.1
Unique Name	prot_H-paniculata_contig26814.7335.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	190

Homology

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BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.500e-14
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++K+E L   K+FE D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RS+               +W   A +   W+++
Sbjct:   79 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 185

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BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.720e-14
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++K+E L   K+FE D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RSI               +W   A +   W+++
Sbjct:   55 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 161

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A4DH85_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DH85_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.880e-14
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY L+ K+E +   K F+ D+  A G +IKR+RSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RSI                W   A +   W+++
Sbjct:   28 VYFLKMKAEVMEKFKMFKADMENATGRKIKRIRSDNGGEYTGRLFKEYRSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARYMLYHEGIDKNWWAEAVNTSAWIIN 134

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A4B1T5_9STRA (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4B1T5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-13
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++K+E L   K+F+ D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RS+               +W   A +   W+++
Sbjct:   28 VYFMKKKAEVLDKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 134

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3GEZ0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GEZ0_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.290e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++K+E L   K F+ D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RSI               +W   A +   W+++
Sbjct:   79 VYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGVDKKWWAEAVNTSAWIIN 185

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-13
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI 80
            VY +++K+E L   K F+ D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RS+
Sbjct:   55 VYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERLNRSL 131

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A4AZQ8_9STRA (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AZQ8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.750e-13
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++KSE L   K F+ D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RSI               +W   A +   W+++
Sbjct:   19 VYFMKKKSEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMARCMLYHEGVDKKWWAEAVNTSAWIIN 125

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3H6E3_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3H6E3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.880e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++K+E L   K+FE D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RSI               +W   A +   W+++
Sbjct:  188 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNRLAERMNRSIVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 294

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3GPC9_9STRA (Integrase catalytic domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GPC9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.960e-13
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++K+E L   K+FE D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RS+               +W   A +   W+++
Sbjct:  130 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 236

[Close]

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Match: A0A6A3GFE6_9STRA (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GFE6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.210e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    4 VYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQFSAENGIKQEFSAAYTPQQNAVAGRSWRSI--------------SRWQEPAGSPPTWVVD 96
            VY +++KSE L   K F+ D+  A G +IKRLRSD GGEY G+ F+++ ++ GI+ E +  YTPQQN +A R  RS+               +W   A +   W+++
Sbjct:  211 VYFMKKKSEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMARCMLYHEGIDKKWWAEAVNTSAWIIN 317

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig26814.7335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6G0JTE1_9STRA	2.500e-14	37.38	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A4CGC1_9STRA	6.720e-14	38.32	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A4DH85_9STRA	6.880e-14	36.45	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A4B1T5_9STRA	1.100e-13	36.45	Integrase catalytic domain-containing protein n=4 ...	[more]
A0A6A3GEZ0_9STRA	1.290e-13	37.38	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6A3LQ24_9STRA	1.400e-13	46.75	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A4AZQ8_9STRA	1.750e-13	38.32	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6A3H6E3_9STRA	1.880e-13	38.32	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6A3GPC9_9STRA	1.960e-13	37.38	Integrase catalytic domain-containing protein n=7 ...	[more]
A0A6A3GFE6_9STRA	2.210e-13	37.38	Integrase catalytic domain-containing protein (Fra...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..99 e-value: 1.3E-12 score: 49.4
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 5..83 e-value: 3.6E-12 score: 46.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..80 score: 8.777
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig26814	contig	H-paniculata_contig26814:1654..2223 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig26814.7335.1	mRNA_H-paniculata_contig26814.7335.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig26814 1644..2394 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig26814.7335.1 ID=prot_H-paniculata_contig26814.7335.1|Name=mRNA_H-paniculata_contig26814.7335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MREVYMLRQKSEALWALKQFERDVARAYGLRIKRLRSDQGGEYIGKPFRQ
FSAENGIKQEFSAAYTPQQNAVAGRSWRSISRWQEPAGSPPTWVVDIGWK
RCARRCTACPDATAQRRNAVRIIARRDTKVGPPSRLRLHGVCYVPVAKET
QAPRQSMDGGAFGVRRGQHELSHIQPRKQKRPVEQEREI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf