mRNA_H-paniculata_contig26804.7332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26804.7332.1
Unique NamemRNA_H-paniculata_contig26804.7332.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 2.280e-73
Identity = 132/344 (38.37%), Postives = 214/344 (62.21%), Query Frame = 3
Query:  360 GFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSS-EVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTFG 1373
            G+  + SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD+GE   ILG++V R+ + GTL +SQ  YV ++L+RF M  ANP   PG   + +T   +D Q+L P   K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTTG +FF A GL+ + ++   +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ G L +A N+ +S R+KH+A+R+  +++ + R Q+ + H PS  QLADI TK+  +  FA + ++I  F 
Sbjct:  358 GWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 9.560e-73
Identity = 130/344 (37.79%), Postives = 212/344 (61.63%), Query Frame = 3
Query:  360 GFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSS-EVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTFG 1373
            G+  + SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD+GE   ILG++V R+ + GTL +SQ  YV + L+RF M  ANP    G   + +T   +D Q+L P   K YQ+M GS+++L QCT+FD+ ++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTTG +FF A GL+ + ++   +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ G L +A N+ +S R+KH+A+R+  +++ + R Q+ + H PS  QLADI TK+  +  FA + ++I  F 
Sbjct:  150 GWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 2.190e-72
Identity = 129/344 (37.50%), Postives = 211/344 (61.34%), Query Frame = 3
Query:  360 GFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSS-EVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTFG 1373
            G+  + SDPCVY   + +  ++L+++VDDIL+TG   +L+     +L ++F  TD+GE   ILG+ V R+ + GTL +SQ  YV ++L+RF M  ANP   PG   + +T   +D Q+L P   K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTTG +FF A GL+ + ++   +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ G L +A N+ +S R+ ++A+R   +++ + R Q+ + H PS  QLADI TK+  +  FA + ++I  F 
Sbjct:   31 GWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRT-NVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 372          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 1.130e-71
Identity = 131/344 (38.08%), Postives = 213/344 (61.92%), Query Frame = 3
Query:  360 GFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSS-EVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTFG 1373
            G+  + SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD+GE   ILG++V R+ + GTL +SQ  YV ++L+RF M  ANP   PG   + +T   +D Q+L P   K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTTG +FF A GL+ + ++   +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ G L +A N+ +S R+KH+ +R+  +++ + R Q+ + H PS  QLADI TK+  +  FA + ++I  F 
Sbjct:  514 GWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 1.180e-71
Identity = 131/340 (38.53%), Postives = 206/340 (60.59%), Query Frame = 3
Query:  360 GFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSSEVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKI 1361
            G+  + SDPCVY   S D   +L+++VDDIL+TG    ++     +LM+ F  TD+GE   ++G+EV R+ + GTL +SQ  Y   +L R+ M  ANP   PG   + +T   +D QLL P   + +QA+ GSL++L QCTR+D+ ++V Q  R  + P Q H+ A K + RYL+G PD+PI Y + + +L  ++D+S+       RSTTG +FF   GL+ + ++   + A +T EAEL AL+  A++ +Y+     E+G +   S  + SD+ G L +A+N+ +SSR+KHIA+RF  L++  + H++ + H PS   LADI TKH  +  FA + + I
Sbjct:  391 GWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 5.760e-69
Identity = 136/346 (39.31%), Postives = 197/346 (56.94%), Query Frame = 3
Query:  354 EHGFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGL--QLTSSEVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTF 1370
            E GF    SDPCVY    N   I L+L+VDD+L+ G     +  V  KL  +F  TDLGEASL+LGME+ R+++  TL +SQ  Y  S+L+RF MS + PT  PG  ++ +    ED  LLD   T++YQ +VGSL+++ Q  R+D+ ++  Q AR M+ P++ H+VA K   RYL G  D  ITY +   KL  +SD+++       +ST+  +   AN  + F S L  +TA ST EAEL+A A   K+ ++   +  ELG   +     V  DN   LH   N ++SSR+KHIA+RF  +++ +   ++ I + P+ D LADI TKH  +  F  L   I  F
Sbjct:   91 EIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 6.550e-67
Identity = 132/352 (37.50%), Postives = 215/352 (61.08%), Query Frame = 3
Query:  360 GFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLG-------YSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQG-IYLLGICRELGLQLTSS-EVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTFG 1373
            G+  + SDPCVY   S ++ ++ S++VDDIL+TG   +L+     +L ++F  TD+GE   ILG++V R+ + GTL +SQ  YV ++L+RF M  ANP   PG   + +T   +D Q+L P   K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R +++L         ++D+S+       RSTTG +FF A GL+ + ++   +TA ST EAE+ AL+  A++  +Y+     EL  +   S  + SD+ G L +A N+ +S R+KH+A+R+  +++ + R Q+ + H PS  QLADI TK+  +  FA + ++I  F 
Sbjct:  737 GWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 1087          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 7.780e-64
Identity = 135/346 (39.02%), Postives = 197/346 (56.94%), Query Frame = 3
Query:  354 EHGFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGL--QLTSSEVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTF 1370
            E GF    SDPCVY    N   I L+L+VDD+L+ G     +  V  KL  +F  TDLGEASL+LGME+ R+++  TL +SQ  Y  S+L+RF +S + PT  PG  ++ +    ED  LLD   T++YQ +VGSL+++ Q  R+D+ ++  Q AR M+ P++ H+VA K   RYL G  D  ITY +   KL  +SD+++       +ST+  +   AN  + F S L  +TA ST EAEL+A A    + ++   +  ELG   +     V  DN   LH   N ++SSR+KHIA+RF  +++ +   ++ I +VP+ D LADI TKH  +  F  L   I  F
Sbjct: 1320 EIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 3.900e-63
Identity = 130/370 (35.14%), Postives = 206/370 (55.68%), Query Frame = 3
Query:  246 GRGLDRICTR------CSSCFSKRQAEGEPQ*VESYNRQRAEEHGFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSS-EVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTK 1319
            G  L+ +C R           +K  A GEP  V    R       +  + SDPCVY   S +  ++L+++VDDIL+TG   +L+     +L ++F  TD+GE   ILG++V R+ + GTL +SQ  YV ++L+RF M  ANP                  Q+L P   K YQ+M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K   RYL+G+P +PI Y R + +L  ++D+S+       RSTTG +FF A GL+ + ++   +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+ G L +A N+ +S R+K +A+R+  +++ +   Q+ + H PS  QLAD  T+
Sbjct:   90 GAFLNALCDRDVYVRPAPGTSAKNSATGEPM-VYKLERSLYGLSQWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPD-----------------QILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRELVLLGQITLHHRPSEHQLADXMTE 441          
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 5.200e-63
Identity = 135/346 (39.02%), Postives = 195/346 (56.36%), Query Frame = 3
Query:  354 EHGFYTSISDPCVYSKGSNDTYIMLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNKQTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDPAATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCELKLLGYSDASYYT-----RSTTGTMFFFANGLVHFSSRLHKITATSTTEAELIALATCAKQGIYLLGICRELGL--QLTSSEVRSDNRGPLHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKHCERVVFAQLRRKILTF 1370
            E GF    SDPCVY    N   I L+L+VDD+L+ G     +  V  KL  +F  TDLGEASL+L ME+ R+++  TL +SQ  Y  S+L+RF MS + PT  PG  ++ +    ED  LLD   T++YQ +VGSL+++ Q  R+D+ ++  Q AR M+ P++ H+VA K   RYL G  D  ITY +   KL  +SD+++       +ST+  +   AN  + F S L  +TA ST EAEL+A A   K+ ++   +  ELG   +     V  DN   LH   N ++SSR+KHIA+RF  +++ +   ++ I +V + D LADI TKH     F  L   I  F
Sbjct:  651 EIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26804.7332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF89_9PHAE2.280e-7338.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE9.560e-7337.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE2.190e-7237.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.130e-7138.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.180e-7138.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE5.760e-6939.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE6.550e-6737.50Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KJH6_9PHAE7.780e-6439.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK0_9PHAE3.900e-6335.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE5.200e-6339.02Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26804contigH-paniculata_contig26804:312..1791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue3.1e-40
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1379
Cds size957
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26804.7332.1prot_H-paniculata_contig26804.7332.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26804 835..1791 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.7331812-UTR-H-paniculata_contig26804:311..6261622929804.7331812-UTR-H-paniculata_contig26804:311..626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26804 312..626 +
1691481018.5305786-UTR-H-paniculata_contig26804:311..6261691481018.5305786-UTR-H-paniculata_contig26804:311..626Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26804 312..626 +
1622929804.7498045-UTR-H-paniculata_contig26804:727..8341622929804.7498045-UTR-H-paniculata_contig26804:727..834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26804 728..834 +
1691481018.5430598-UTR-H-paniculata_contig26804:727..8341691481018.5430598-UTR-H-paniculata_contig26804:727..834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26804 728..834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.7683485-CDS-H-paniculata_contig26804:834..17911622929804.7683485-CDS-H-paniculata_contig26804:834..1791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26804 835..1791 +
1691481018.5523398-CDS-H-paniculata_contig26804:834..17911691481018.5523398-CDS-H-paniculata_contig26804:834..1791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26804 835..1791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26804.7332.1

>prot_H-paniculata_contig26804.7332.1 ID=prot_H-paniculata_contig26804.7332.1|Name=mRNA_H-paniculata_contig26804.7332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp
MLSLFVDDILVTGPTDRLLMDVHNKLMNKFTTTDLGEASLILGMEVLRNK
QTGTLQLSQHKYVLSVLDRFNMSSANPTKPPGVKTDSTTTTSEDRQLLDP
AATKEYQAMVGSLIFLTQCTRFDVCFSVIQAARYMSAPTQQHLVAVKRIF
RYLQGHPDVPITYSRCELKLLGYSDASYYTRSTTGTMFFFANGLVHFSSR
LHKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSSEVRSDNRGP
LHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVPSTDQLADIPTKH
CERVVFAQLRRKILTFGK*
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mRNA from alignment at H-paniculata_contig26804:312..1791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26804.7332.1 ID=mRNA_H-paniculata_contig26804.7332.1|Name=mRNA_H-paniculata_contig26804.7332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1480bp|location=Sequence derived from alignment at H-paniculata_contig26804:312..1791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATGCGGAAGGAACTCAACAGCTTCGACGAGCATCAAGTCGCCGATTT AATCCCAGCTAGCTCCATCCCATCCGACCACACAGTTATTGGCCCGCGCT GGGTATTTAAAGTACAAGCAGACGGAAAATACAAGGCTCGGCTCGTGGAA CAAGGCTGGTCGCAAAAACATGGGGTTGACTGCGGGAGTACCTTTGCACC TGTATGCAGACTGGAGAGCCAGCGAATACTGCTAGCACTAGCGACGGCAG AGGATTGGACCGTATATGCACTAGATGTTCAAGTTGCTTTTCTAAACGGC AAGCTGAAGGAGAGCGTCTTCTGCAAATAAGCACCTGGTTTTGAGAAGAC TCACCCTACTACTGGACAACCCTGCGTGATGAATTTGAAGAAATCGATAC ATGGGTTGCGCCAAAGCCCAATGAGTGGAATCATACAATCGACAACGAGC TGAGGAGCATGGGTTTTACACCAGCATTTCGGACCCCTGTGTCTACAGTA AAGGAAGCAACGACACCTACATTATGCTTAGTCTTTTCGTCGACGATATA CTAGTAACAGGACCAACGGACAGGCTGCTAATGGACGTGCACAACAAGCT GATGAATAAATTTACTACCACGGACCTTGGAGAAGCATCGCTTATACTTG GGATGGAGGTACTACGCAACAAACAGACCGGCACTCTACAGCTATCACAG CACAAGTATGTACTATCTGTTTTGGACAGGTTCAACATGTCATCAGCGAA TCCCACGAAACCACCTGGAGTTAAAACGGACTCCACTACTACTACTAGCG AAGACAGACAACTACTGGATCCAGCAGCTACAAAGGAGTATCAAGCCATG GTAGGGAGCCTCATCTTCTTGACCCAGTGTACAAGATTCGACGTCTGCTT CAGCGTCATCCAAGCGGCACGCTACATGAGCGCACCAACTCAACAACATC TAGTCGCAGTAAAGCGGATTTTTCGGTATTTACAGGGTCACCCAGATGTT CCCATCACGTACAGCAGATGTGAGCTGAAACTACTCGGCTATTCTGATGC ATCATACTACACACGGTCTACAACAGGCACTATGTTCTTCTTTGCCAACG GATTGGTACACTTCTCATCTCGACTACACAAGATAACGGCTACAAGCACA ACTGAGGCAGAACTCATCGCACTGGCTACATGCGCAAAACAAGGCATTTA CCTTCTGGGTATCTGCAGGGAGCTGGGTCTTCAACTGACTAGCAGCGAGG TTCGAAGTGACAACCGGGGACCTCTTCATCTCGCGGCCAACAGCAATTAC TCAAGCCGCAGCAAACACATCGCCATCAGGTTCGCAGCACTGAAAGACTG GATCAGGAGACATCAGCTCATCATCGACCATGTGCCAAGTACCGATCAGC TAGCTGACATTCCCACCAAACACTGCGAAAGAGTGGTGTTCGCCCAACTA CGGAGAAAAATATTGACTTTTGGAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26804:312..1791+

>mRNA_H-paniculata_contig26804.7332.1 ID=mRNA_H-paniculata_contig26804.7332.1|Name=mRNA_H-paniculata_contig26804.7332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig26804:312..1791+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTAGTCTTTTCGTCGACGATATACTAGTAACAGGACCAACGGACAG
GCTGCTAATGGACGTGCACAACAAGCTGATGAATAAATTTACTACCACGG
ACCTTGGAGAAGCATCGCTTATACTTGGGATGGAGGTACTACGCAACAAA
CAGACCGGCACTCTACAGCTATCACAGCACAAGTATGTACTATCTGTTTT
GGACAGGTTCAACATGTCATCAGCGAATCCCACGAAACCACCTGGAGTTA
AAACGGACTCCACTACTACTACTAGCGAAGACAGACAACTACTGGATCCA
GCAGCTACAAAGGAGTATCAAGCCATGGTAGGGAGCCTCATCTTCTTGAC
CCAGTGTACAAGATTCGACGTCTGCTTCAGCGTCATCCAAGCGGCACGCT
ACATGAGCGCACCAACTCAACAACATCTAGTCGCAGTAAAGCGGATTTTT
CGGTATTTACAGGGTCACCCAGATGTTCCCATCACGTACAGCAGATGTGA
GCTGAAACTACTCGGCTATTCTGATGCATCATACTACACACGGTCTACAA
CAGGCACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCATCTCGA
CTACACAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATCGCACT
GGCTACATGCGCAAAACAAGGCATTTACCTTCTGGGTATCTGCAGGGAGC
TGGGTCTTCAACTGACTAGCAGCGAGGTTCGAAGTGACAACCGGGGACCT
CTTCATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACACATCGC
CATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGACATCAGCTCATCA
TCGACCATGTGCCAAGTACCGATCAGCTAGCTGACATTCCCACCAAACAC
TGCGAAAGAGTGGTGTTCGCCCAACTACGGAGAAAAATATTGACTTTTGG
AAAATGAATGCTTAGTCTTTTCGTCGACGATATACTAGTAACAGGACCAA
CGGACAGGCTGCTAATGGACGTGCACAACAAGCTGATGAATAAATTTACT
ACCACGGACCTTGGAGAAGCATCGCTTATACTTGGGATGGAGGTACTACG
CAACAAACAGACCGGCACTCTACAGCTATCACAGCACAAGTATGTACTAT
CTGTTTTGGACAGGTTCAACATGTCATCAGCGAATCCCACGAAACCACCT
GGAGTTAAAACGGACTCCACTACTACTACTAGCGAAGACAGACAACTACT
GGATCCAGCAGCTACAAAGGAGTATCAAGCCATGGTAGGGAGCCTCATCT
TCTTGACCCAGTGTACAAGATTCGACGTCTGCTTCAGCGTCATCCAAGCG
GCACGCTACATGAGCGCACCAACTCAACAACATCTAGTCGCAGTAAAGCG
GATTTTTCGGTATTTACAGGGTCACCCAGATGTTCCCATCACGTACAGCA
GATGTGAGCTGAAACTACTCGGCTATTCTGATGCATCATACTACACACGG
TCTACAACAGGCACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTC
ATCTCGACTACACAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCA
TCGCACTGGCTACATGCGCAAAACAAGGCATTTACCTTCTGGGTATCTGC
AGGGAGCTGGGTCTTCAACTGACTAGCAGCGAGGTTCGAAGTGACAACCG
GGGACCTCTTCATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAAC
ACATCGCCATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGACATCAG
CTCATCATCGACCATGTGCCAAGTACCGATCAGCTAGCTGACATTCCCAC
CAAACACTGCGAAAGAGTGGTGTTCGCCCAACTACGGAGAAAAATATTGA
CTTTTGGAAAATGA
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