mRNA_H-paniculata_contig2680.7330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2680.7330.1
Unique NamemRNA_H-paniculata_contig2680.7330.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: D7FS62_ECTSI (tRNA pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS62_ECTSI)

HSP 1 Score: 407 bits (1045), Expect = 6.920e-136
Identity = 195/298 (65.44%), Postives = 238/298 (79.87%), Query Frame = 3
Query:  363 RKDALSSENGEYRLHQDIFEGRKTRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGY 1256
            R++A   E GEYR+ +++ EG+KTRFVSRVMYDGTNY GFQLQ +G PTVQ VLE AL+ RFQ +VPV+ AGRTD+GVH+ GQA+HFDLPNA+ DL +L Y MNQMMPEDVRVWNMS+APP +  Q +K  PW  MLNA GK YSYRL VG V +PLDRLYR HA++AA + INV L+Y+ +P+ VG HDFAGF+N+  K+A  K   G G+FNT R VYSA+++DEGGGN++L FHLDGALYRMVRNMVG +L+VAAGR+  EV+DEIF T VRD+  IY AP HGLTL+ V+YDGY
Sbjct:  114 RREARFDEEGEYRVFRELLEGKKTRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRLIYAAPAHGLTLDTVLYDGY 411          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: R7QN10_CHOCR (tRNA pseudouridine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN10_CHOCR)

HSP 1 Score: 203 bits (517), Expect = 9.890e-58
Identity = 125/293 (42.66%), Postives = 172/293 (58.70%), Query Frame = 3
Query:  429 KTRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADT-----DLGELTYVMNQMMPEDVRVWNMSLAP---PC--TAEQADKRL---PWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGK---FNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGYE 1259
            K R  +RV YDGT Y G+Q Q++ QPTVQ  LE AL R+F   + V+GA RTD+GVHA GQA+HFD+P A          +  Y +NQM+P DVRV  +S+AP   PC  T E  +  +   PWH + NA GK+Y+YR+    V +PL RLYR H  RA +   +  L+ E   +FVG+HDF+ F N  +         GF      N  R ++SA V+ EG G  ++ F ++GA+YRM+RN++GT+LSV+ G +    +D +F +  R       AP  GL LE VIYD +E
Sbjct:   53 KQRIRARVAYDGTLYRGWQYQTD-QPTVQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTNSTNPPP------GFVPPVLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFASKDRRLVP-KSAPAKGLCLEKVIYDEWE 337          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A1Z5KP68_FISSO (tRNA pseudouridine synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP68_FISSO)

HSP 1 Score: 196 bits (498), Expect = 2.830e-55
Identity = 116/297 (39.06%), Postives = 172/297 (57.91%), Query Frame = 3
Query:  435 RFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTD-LGELTYVMNQMMPEDVRVWNMSLAPPCTAE--QADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFAN--DADKKAAHKLAGGFGKFNTWREVYSAD--VVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGV---------------RDTSKIYCAPPHGLTLENVIYDGYE 1259
            R+ +RV YDG  + GFQLQ  G+ TVQ  LE  L +R  Q V ++GAGRTD+GVHA GQAIHFDL +  ++ L ++ + +N M+P DV +WN+SLAP    E  Q  ++  W+V+ N+ GK+YSYRLC+  V +PL+R +R H +      +++ L+  ++  + G HDF  FA   +A+++ + +        +T R VYSA+  V DE  G  ++ FHL GALY+ VRNMVGT +  +   +  E   ++                    R+ +K   APP GLTLE+V +D  E
Sbjct:   23 RYRARVAYDGAGFHGFQLQPEGKRTVQGCLEDVLGQRLGQSVRLVGAGRTDTGVHARGQAIHFDLHSPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALEANQRRSGRTV------STVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFDEEE 313          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: F0Y1Q4_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q4_AURAN)

HSP 1 Score: 196 bits (497), Expect = 3.070e-55
Identity = 120/284 (42.25%), Postives = 160/284 (56.34%), Query Frame = 3
Query:  432 TRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQ-QHVPVMGAGRTDSGVHATGQAIHFDLPNAD---TDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVG-DVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDA---DKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSK-IYCAPPHGLTLENVIYDGY 1256
            TR+  RV YDGT + G+Q+Q  G  TVQ  L  AL  RF    +P +GA RTD+GVHA GQ  H DLP A      L  L + +N+++P+D RV ++  AP     QA + LPWH + NA+GK Y+YRL       +PL RLYR H    A   ++ G + + +  FVG HDFA FAN+A   D   A +        +T R + SA ++DEGGG+  L F LDGALY+MVRN+VG  ++VA G +  + +  +   G R        AP  GL LE V YD Y
Sbjct:   33 TRYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHV---AYRDVDFGRLDDALSCFVGEHDFAAFANNAPGLDPSGAAR--------STTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A7S4MSL3_9STRA (tRNA pseudouridine synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSL3_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.050e-54
Identity = 122/318 (38.36%), Postives = 179/318 (56.29%), Query Frame = 3
Query:  366 KDALSSENGEYRLHQDIFEGRKTRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGE-------LTYVMNQMMPEDVRVWNMSLAPPCTA----EQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFAN--DADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTG---------VRDTSKIYCAPPHGLTLENVIYDG 1253
            K + S +  ++ + +  FEG   R+ +RV YDGT ++G+Q Q+ G+ T+Q  +E  L+RRF + V ++GAGRTD+GVHA GQA HFDL   +  + +       L   +N M+  D+RVWN   APP ++    E  ++   WHV+ NA  K+YSYR+      +PL R  R H         N+ L+   +  F G HDF  FA   DA+++ + K+ G      T R VY+ ++V+EG GN ++ F L GALY+MVRNM+GT L+VA GR+  + + E              VR  +K   A P GLTLE+V +DG
Sbjct:   69 KASRSHDADDHEVRKVCFEG--IRYRARVAYDGTGFNGWQTQAKGR-TIQGDIEAVLSRRFDRPVRIVGAGRTDAGVHARGQAFHFDLRADEIGVADSKCFDLQLQRSLNSMLRRDIRVWNTCQAPPPSSYKNWEGIERNHKWHVIYNAEKKLYSYRISTAPYLDPLLRHTRTHVFDPT----NIELLRTALQHFEGTHDFRAFAGAIDANERKSGKVLG------TIRTVYAVNLVEEGNGNYRVDFLLKGALYKMVRNMMGTALAVAQGRLEEDRLLEFLHHDSSEGKVLQFVRKDNKCKPAAPEGLTLEHVYFDG 373          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A482SL84_9ARCH (tRNA pseudouridine synthase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL84_9ARCH)

HSP 1 Score: 189 bits (480), Expect = 3.210e-52
Identity = 113/281 (40.21%), Postives = 155/281 (55.16%), Query Frame = 3
Query:  435 RFVSRVMYDGTNYSGFQLQSNGQP-TVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDL-----PNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSE-VVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGY 1256
            R+V+RV YDGT Y G+Q QS  +  T+Q  +   L++R  + V + GAGRTD GVHA GQ IHFDL      N D+ +    + +NQM+P D+RV+NMSLAPP T EQ     P+H   +A GK Y YR C      P+ R    H  R      +   + + +  FVG HDFA F N   K+          +++T R +YS   +DEG G  ++ FH+  ALY+M+RNMVG  +SVA G++  E +V  +     R  +     PP GL LE+V YD Y
Sbjct:   75 RYVARVSYDGTAYRGWQQQSQPRTKTIQGTINQNLSKRLSREVRITGAGRTDQGVHAKGQGIHFDLFDHEYLNPDS-IPNFQFKLNQMLPTDIRVYNMSLAPPGTVEQMLTGDPFHATKSAIGKKYIYRYCTNQFVEPIHRHIYTHFYR----EYDYSTLPDCLQCFVGPHDFACFGNKV-KQFVKDFETKPIEYDTMRTIYSIQHIDEGSGYYRIEFHIKSALYKMIRNMVGACVSVAKGQITKEDIVQMLVNPTQRINNPAIPVPPEGLILEHVYYDHY 349          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: L1IVY1_GUITC (tRNA pseudouridine synthase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IVY1_GUITC)

HSP 1 Score: 179 bits (454), Expect = 2.210e-49
Identity = 105/257 (40.86%), Postives = 151/257 (58.75%), Query Frame = 3
Query:  369 DALSSEN-GEYRLHQDIFEGRKT-RFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCT-AEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSV 1130
            D+L++ N G      D  +  KT R+   VMYDGTNY+GFQLQ + QP++Q +LE  L+R+ Q+   V+GAGRTDSGVH+ GQ +HFD     TDL +  + MN M+P DV++  +            ++   WH + +A  K+YSYR+ +G V +P+ R  R H  R     +++ L+ EV   F G HDF+ F+N     +           +T R +Y   VV EG GN++L F LDGALY+MVRN+VGT+L+V
Sbjct:    9 DSLNAANMGNNATASDDSDLDKTFRYRCNVMYDGTNYNGFQLQ-HYQPSIQGLLETVLSRKLQRRTRVVGAGRTDSGVHSRGQVVHFDSSENITDLQKFQHGMNLMLPLDVKICGLEHVQDLDFVPHLNETRKWHAIYSARKKLYSYRIFIGKVQDPITRHSRHHEYR----NVDLDLLREVAAMFEGTHDFSAFSNTRGDNST---------MDTVRTIYRVGVVFEGEGNVRLDFELDGALYKMVRNIVGTILAV 251          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A836CB05_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB05_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.870e-49
Identity = 111/284 (39.08%), Postives = 155/284 (54.58%), Query Frame = 3
Query:  438 FVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTD--------LGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGV-----RDTSKIYCAPPHGLTLENVIYD 1250
            + ++VMYDG  + GFQLQ     TVQ  LE AL +RFQ+ + V+GA RTD+GVH+ GQ +HFDLP +           +  L Y +NQM+PEDVRV+ ++  P  + +Q  + LPW   +NA  K+Y+YRL   DV NPLD   R H        +++G++   +           F++ ADK AA   A G G  +T R V    +     G + +   LDGALY+MVR MVG  ++VAAGR+ + V+     +G       D S    AP  GLTLE V Y+
Sbjct:   80 YTAKVMYDGVGFRGFQLQPGNYRTVQGELEKALQKRFQRRISVLGASRTDAGVHSRGQVVHFDLPASGASALAYDPAAMALLQYCLNQMLPEDVRVYGLAPVPLPSPQQRQQGLPWSANVNARAKLYTYRLSFCDVTNPLDARQRAHYPPVLWP-VDLGVLEATLA----------FSSKADKSAALVAAAGRGDRDTVRTVVRITLRRGAPGYIDIDVLLDGALYKMVRYMVGAAVAVAAGRMDARVITTSLLSGNWEGSGADKSAAAPAPACGLTLEEVFYE 352          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: M2WXR7_GALSU (tRNA pseudouridine synthase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WXR7_GALSU)

HSP 1 Score: 179 bits (454), Expect = 1.190e-48
Identity = 105/275 (38.18%), Postives = 157/275 (57.09%), Query Frame = 3
Query:  435 RFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFAN-DADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGY 1256
            R+  RV YDGT++SG+Q Q   + +VQ VLE  L++R  + + ++GAGRTDSGVHA GQ  HFD  +  +D   L Y +N+M+  D+RV+++    P ++   D R  WH + +A  KVYSYR  +    +PL+R +R H  R    R N+  +Y+    F+G HDF  F + + + K   K        N  R +Y  D+V E G + +L + L+GALYRM+RN+  ++  VA+  +  + ++EI     R  +    AP HGL LE VIYD Y
Sbjct:   73 RYRLRVAYDGTDFSGWQFQEKRR-SVQGVLEQVLSKRLNRSIRIIGAGRTDSGVHARGQVAHFDTVSF-SDCPHLEYTLNRMLSGDIRVYDLQQKEPISS---DPRNNWHAIFSARKKVYSYRFSIAKELDPLERRFRFHFYR----RCNLERLYDATKVFLGTHDFTSFCSRNTEMKEMEK--------NMCRTIYRIDLVHESGDSYRLEYELNGALYRMIRNITSSLFFVASDELTLDDLNEILHAKDRRRAP-KAAPAHGLCLERVIYDDY 329          
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: B8CDY0_THAPS (tRNA pseudouridine synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY0_THAPS)

HSP 1 Score: 177 bits (448), Expect = 1.490e-48
Identity = 110/281 (39.15%), Postives = 157/281 (55.87%), Query Frame = 3
Query:  447 RVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNAD------TDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVP-NPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGG-------GNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIY 1247
            RV Y GT ++G+QLQ  G+ TVQ  +E  L RRF + +PV+GAGRTD+GVHA GQAIHFDL + +      T    L + MN+MMP D+R++++ LAP           PWH +  A  K YSYRL +G    NP++R  R H        +++  +  ++  +VG HDF  F    ++ A  +  G   + NT R V+  +++ +         GN ++ F L GALY+MVRNMVGT + V  GR+  E + E+ +   R  +    APP GLTLE V Y
Sbjct:    1 RVAYHGTPFNGWQLQP-GRSTVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEILQHSMNRMMPLDIRMFHLQLAP---------YTPWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRTHF-----VHLDMERLESILQLYVGTHDFGAFGGQLEQNAKKRNDGK--RINTVRTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELLKIPDRKDNPSKPAPPEGLTLECVYY 264          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS62_ECTSI6.920e-13665.44tRNA pseudouridine synthase n=2 Tax=Ectocarpus Tax... [more]
R7QN10_CHOCR9.890e-5842.66tRNA pseudouridine synthase n=1 Tax=Chondrus crisp... [more]
A0A1Z5KP68_FISSO2.830e-5539.06tRNA pseudouridine synthase n=1 Tax=Fistulifera so... [more]
F0Y1Q4_AURAN3.070e-5542.25tRNA pseudouridine synthase n=1 Tax=Aureococcus an... [more]
A0A7S4MSL3_9STRA1.050e-5438.36tRNA pseudouridine synthase n=1 Tax=Odontella auri... [more]
A0A482SL84_9ARCH3.210e-5240.21tRNA pseudouridine synthase A n=1 Tax=archaeon Tax... [more]
L1IVY1_GUITC2.210e-4940.86tRNA pseudouridine synthase n=1 Tax=Guillardia the... [more]
A0A836CB05_9STRA5.870e-4939.08tRNA pseudouridine synthase n=1 Tax=Tribonema minu... [more]
M2WXR7_GALSU1.190e-4838.18tRNA pseudouridine synthase n=1 Tax=Galdieria sulp... [more]
B8CDY0_THAPS1.490e-4839.15tRNA pseudouridine synthase (Fragment) n=1 Tax=Tha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2680contigH-paniculata_contig2680:16827..19518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.9
Seed ortholog evalue5.6e-111
Seed eggNOG ortholog2880.D7FS62
KEGG koko:K06173
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0101@1,KOG4393@2759
Ec32 ortholog descriptionPseudouridine synthase I, TruA, C-terminal
Ec32 orthologEc-01_000690.1
EC5.4.99.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons4
Model size1441
Cds size1248
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2680.7330.1prot_H-paniculata_contig2680.7330.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2680 17006..19504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.5080864-UTR-H-paniculata_contig2680:16826..170051622929804.5080864-UTR-H-paniculata_contig2680:16826..17005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2680 16827..17005 -
1691481018.4438813-UTR-H-paniculata_contig2680:16826..170051691481018.4438813-UTR-H-paniculata_contig2680:16826..17005Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2680 16827..17005 -
1622929804.6033392-UTR-H-paniculata_contig2680:19504..195181622929804.6033392-UTR-H-paniculata_contig2680:19504..19518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2680 19505..19518 -
1691481018.4986832-UTR-H-paniculata_contig2680:19504..195181691481018.4986832-UTR-H-paniculata_contig2680:19504..19518Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2680 19505..19518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929804.5279322-CDS-H-paniculata_contig2680:17005..175781622929804.5279322-CDS-H-paniculata_contig2680:17005..17578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 17006..17578 -
1691481018.456929-CDS-H-paniculata_contig2680:17005..175781691481018.456929-CDS-H-paniculata_contig2680:17005..17578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 17006..17578 -
1622929804.5467455-CDS-H-paniculata_contig2680:17789..179631622929804.5467455-CDS-H-paniculata_contig2680:17789..17963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 17790..17963 -
1691481018.467423-CDS-H-paniculata_contig2680:17789..179631691481018.467423-CDS-H-paniculata_contig2680:17789..17963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 17790..17963 -
1622929804.5669172-CDS-H-paniculata_contig2680:18451..186611622929804.5669172-CDS-H-paniculata_contig2680:18451..18661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 18452..18661 -
1691481018.478958-CDS-H-paniculata_contig2680:18451..186611691481018.478958-CDS-H-paniculata_contig2680:18451..18661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 18452..18661 -
1622929804.5859482-CDS-H-paniculata_contig2680:19213..195041622929804.5859482-CDS-H-paniculata_contig2680:19213..19504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 19214..19504 -
1691481018.4892828-CDS-H-paniculata_contig2680:19213..195041691481018.4892828-CDS-H-paniculata_contig2680:19213..19504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2680 19214..19504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2680.7330.1

>prot_H-paniculata_contig2680.7330.1 ID=prot_H-paniculata_contig2680.7330.1|Name=mRNA_H-paniculata_contig2680.7330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=416bp
MLSLSLFESSYALRGGIAALAVTHKIAIAAGRQCRPRQFSTRETAFVHLI
NFPPQPQRRGRSDYSPSSVSPTCGDSNTSNRSDVVWKDDDRESELQQEKK
RHGPQHAMSQPLFGHDRKDALSSENGEYRLHQDIFEGRKTRFVSRVMYDG
TNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQA
IHFDLPNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWH
VMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPR
FVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKL
VFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAP
PHGLTLENVIYDGYE*
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mRNA from alignment at H-paniculata_contig2680:16827..19518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2680.7330.1 ID=mRNA_H-paniculata_contig2680.7330.1|Name=mRNA_H-paniculata_contig2680.7330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2692bp|location=Sequence derived from alignment at H-paniculata_contig2680:16827..19518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTTGATCGTGCATGCTTTCGCTGTCGCTCTTTGAGAGCAGCTACGCG CTGCGAGGAGGAATAGCAGCCTTGGCGGTCACCCATAAAATCGCAATAGC GGCTGGTCGACAATGCCGACCACGACAATTTTCAACCCGTGAAACTGCAT TCGTGCACCTCATCAATTTCCCACCTCAGCCGCAGCGACGAGGGCGGTCG GACTACTCCCCCTCGAGCGTGTCGCCAACATGCGGCGATAGCAACACTTC TAACAGAAGCGATGTTGTATGGAAAGACGATGATCGAGAGAGCGAATTAC AACAGGTGCATTTCTCCTCGAAGTGGCATATCGAGTACAACCTGACGATT GAATAGCAATAAAGTGCAGTACAGTACAGTACAGTACTGGAGGAAGAGCA TGGGTCAGGTTCTCAGTGCGAGTGAGTCTAAGCCTTAGAGGGTAGGGCAC GGCTGTTTTGCCGATGACTGGATACGAGTGTGATTAAGGGTCTTAACGGG TGAGGATTCTGCTTCTCAAAGGGCAGTCTAAAACCGAATGTCAAAACGGA CAAGTCCCGTACTACGGCTATCTCACAATTTCCTTGATTCTTGAGCTTAG AATTAAGGAGAGACCGACGTGATCATTAACCTGAGTTCTTTGGGGATCTA AATCGGGGCCTTGTACTTGATACATTGCCGTGGGCTTAAGCTTCTTCCCT CACAGCACTTTCGAATGTATATGATCGACCTTGTATACTTCCGGGGTGGA AAGAAAGAAAGGTTCTCAGTGCACATATGGACAACCTCTCTGCAGCTTGT AATATCCAGCGTGTGCAATTAGTTCTTCCCTGAGCCGTGTTTTCCTTCGT TGGACAGGAGAAGAAGCGACATGGACCACAGCACGCTATGAGTCAACCGT TGTTTGGGCACGACAGGAAAGATGCATTATCTAGTGAAAACGGGGAATAC CGACTGCACCAAGATATTTTCGAGGGCAGAAAAACCCGTTTTGTGTCTCG AGTGATGTACGACGGCACGAACTACAGCGGGTTTCAGCTACAGAGCAACG GACAGCCGACAGTCCAGGTAAGGGATCTTTCGGGGAGCATTGTTGCCGCC AGCGTGAGATTTGCGGCGACCAGCTGTGACTTTGAGATGGAATCAGATGC TCGTGTTGATCTAGAGTGAGGAGCCAAGGTTGGGTAAAGCAACTCTGCGG GTCTTACTTGTCGTCCCCTGAGAAACGGGCCAAATCTCGGGAAGTCAATT CTAAGCATCCGTTGTCATCCTGTTGGTGTATGCGTCAGGTTCTACAAAGT ACGAGCCCGTGGGAAAGGTTGTTTCTAAAAGTGTTCTGTTCTTTTTGGAA GCTTGAATTATGGAACAGGTGCCACAACACGCAGTTCCACTCTGTCATGG AAACCACGAGGCCTAATATCTATTGGAGTTTCTGACGTTCAGCAGGCCTT TTACTTACGTAAGTTCTACCCTACGTGCACTATCGAAAATGCTTGTGAAA TACGTTAGTTTTGGGATTTGTACATTAACTCCTTTTCTCGTTCTGCTTTA TGCAGGAGGTGCTGGAGGTGGCTCTTGCTCGGCGGTTTCAACAGCACGTA CCAGTCATGGGCGCTGGAAGGACAGACAGCGGCGTTCACGCGACGGGTCA AGCGATACACTTTGACCTACCCAACGCTGACACGGACCTCGGCGAGCTCA CATACGTGATGAACCAAATGATGCCGGAGGTGAATATATATTGCGACCAA ACGGTGTTCTGCGTAGGCAAGCCAAAGGACTTGAAGCTTATTGGTAACCA CGATCACTCACGATGAGTCTAATCCCATTTCGTTGCCGCGTGGACGAAAC ATGTCGCTGAAGTTTCCGTCGTGGCAACCACATTACACCGTGACAACGTC AACCCTCCCCCCCCCCCCTCCCACCGTATTTTCCCCGCAGGATGTTCGCG TATGGAATATGTCACTTGCGCCACCATGCACTGCAGAACAAGCAGATAAA CGTCTACCGTGGCATGTGATGTTAAACGCCAGCGGGAAAGTGTACAGTTA TCGCCTTTGTGTGGGCGACGTGCCCAACCCACTAGACCGTCTCTACCGAG TACACGCCAATCGGGCCGCCCGAGCACGCATAAATGTTGGCCTAATCTAC GAGGTTATGCCTCGCTTTGTGGGAAATCACGACTTTGCTGGATTTGCGAA TGATGCTGACAAAAAAGCTGCGCACAAATTGGCTGGTGGGTTTGGAAAAT TCAATACCTGGCGAGAAGTTTACTCGGCAGATGTTGTGGACGAGGGCGGC GGTAATTTGAAACTTGTTTTTCACTTGGACGGGGCATTGTATCGGATGGT GAGAAATATGGTGGGAACTGTGCTTTCAGTTGCTGCCGGTCGGGTGGGAA GTGAGGTTGTTGATGAAATTTTTAGAACCGGTGTCAGAGACACGTCCAAG ATTTACTGTGCACCGCCGCATGGATTGACACTGGAAAATGTTATTTACGA TGGATACGAGTGACCGCGGTCGCTTGAACTTGAAAAAAGCACACAATTAT TTTTCTCTGTTTTTGACAGTATGGCACTGTGTTTTCGTGATATCTCGTGT ATCGTTAGCGTGCAATATCTCACCTCTGAAGGCGGCTCGTCACAAGGCGA TCGTCGGGGTAATAATCTCGTTGGCTAAGGCTGATTCCGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2680:16827..19518-

>mRNA_H-paniculata_contig2680.7330.1 ID=mRNA_H-paniculata_contig2680.7330.1|Name=mRNA_H-paniculata_contig2680.7330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2496bp|location=Sequence derived from alignment at H-paniculata_contig2680:16827..19518- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTCGCTGTCGCTCTTTGAGAGCAGCTACGCGCTGCGAGGAGGAAT
AGCAGCCTTGGCGGTCACCCATAAAATCGCAATAGCGGCTGGTCGACAAT
GCCGACCACGACAATTTTCAACCCGTGAAACTGCATTCGTGCACCTCATC
AATTTCCCACCTCAGCCGCAGCGACGAGGGCGGTCGGACTACTCCCCCTC
GAGCGTGTCGCCAACATGCGGCGATAGCAACACTTCTAACAGAAGCGATG
TTGTATGGAAAGACGATGATCGAGAGAGCGAATTACAACAGATGCTTTCG
CTGTCGCTCTTTGAGAGCAGCTACGCGCTGCGAGGAGGAATAGCAGCCTT
GGCGGTCACCCATAAAATCGCAATAGCGGCTGGTCGACAATGCCGACCAC
GACAATTTTCAACCCGTGAAACTGCATTCGTGCACCTCATCAATTTCCCA
CCTCAGCCGCAGCGACGAGGGCGGTCGGACTACTCCCCCTCGAGCGTGTC
GCCAACATGCGGCGATAGCAACACTTCTAACAGAAGCGATGTTGTATGGA
AAGACGATGATCGAGAGAGCGAATTACAACAGGAGAAGAAGCGACATGGA
CCACAGCACGCTATGAGTCAACCGTTGTTTGGGCACGACAGGAAAGATGC
ATTATCTAGTGAAAACGGGGAATACCGACTGCACCAAGATATTTTCGAGG
GCAGAAAAACCCGTTTTGTGTCTCGAGTGATGTACGACGGCACGAACTAC
AGCGGGTTTCAGCTACAGAGCAACGGACAGCCGACAGTCCAGGAGAAGAA
GCGACATGGACCACAGCACGCTATGAGTCAACCGTTGTTTGGGCACGACA
GGAAAGATGCATTATCTAGTGAAAACGGGGAATACCGACTGCACCAAGAT
ATTTTCGAGGGCAGAAAAACCCGTTTTGTGTCTCGAGTGATGTACGACGG
CACGAACTACAGCGGGTTTCAGCTACAGAGCAACGGACAGCCGACAGTCC
AGGAGGTGCTGGAGGTGGCTCTTGCTCGGCGGTTTCAACAGCACGTACCA
GTCATGGGCGCTGGAAGGACAGACAGCGGCGTTCACGCGACGGGTCAAGC
GATACACTTTGACCTACCCAACGCTGACACGGACCTCGGCGAGCTCACAT
ACGTGATGAACCAAATGATGCCGGAGGAGGTGCTGGAGGTGGCTCTTGCT
CGGCGGTTTCAACAGCACGTACCAGTCATGGGCGCTGGAAGGACAGACAG
CGGCGTTCACGCGACGGGTCAAGCGATACACTTTGACCTACCCAACGCTG
ACACGGACCTCGGCGAGCTCACATACGTGATGAACCAAATGATGCCGGAG
GATGTTCGCGTATGGAATATGTCACTTGCGCCACCATGCACTGCAGAACA
AGCAGATAAACGTCTACCGTGGCATGTGATGTTAAACGCCAGCGGGAAAG
TGTACAGTTATCGCCTTTGTGTGGGCGACGTGCCCAACCCACTAGACCGT
CTCTACCGAGTACACGCCAATCGGGCCGCCCGAGCACGCATAAATGTTGG
CCTAATCTACGAGGTTATGCCTCGCTTTGTGGGAAATCACGACTTTGCTG
GATTTGCGAATGATGCTGACAAAAAAGCTGCGCACAAATTGGCTGGTGGG
TTTGGAAAATTCAATACCTGGCGAGAAGTTTACTCGGCAGATGTTGTGGA
CGAGGGCGGCGGTAATTTGAAACTTGTTTTTCACTTGGACGGGGCATTGT
ATCGGATGGTGAGAAATATGGTGGGAACTGTGCTTTCAGTTGCTGCCGGT
CGGGTGGGAAGTGAGGTTGTTGATGAAATTTTTAGAACCGGTGTCAGAGA
CACGTCCAAGATTTACTGTGCACCGCCGCATGGATTGACACTGGAAAATG
TTATTTACGATGGATACGAGTGAGATGTTCGCGTATGGAATATGTCACTT
GCGCCACCATGCACTGCAGAACAAGCAGATAAACGTCTACCGTGGCATGT
GATGTTAAACGCCAGCGGGAAAGTGTACAGTTATCGCCTTTGTGTGGGCG
ACGTGCCCAACCCACTAGACCGTCTCTACCGAGTACACGCCAATCGGGCC
GCCCGAGCACGCATAAATGTTGGCCTAATCTACGAGGTTATGCCTCGCTT
TGTGGGAAATCACGACTTTGCTGGATTTGCGAATGATGCTGACAAAAAAG
CTGCGCACAAATTGGCTGGTGGGTTTGGAAAATTCAATACCTGGCGAGAA
GTTTACTCGGCAGATGTTGTGGACGAGGGCGGCGGTAATTTGAAACTTGT
TTTTCACTTGGACGGGGCATTGTATCGGATGGTGAGAAATATGGTGGGAA
CTGTGCTTTCAGTTGCTGCCGGTCGGGTGGGAAGTGAGGTTGTTGATGAA
ATTTTTAGAACCGGTGTCAGAGACACGTCCAAGATTTACTGTGCACCGCC
GCATGGATTGACACTGGAAAATGTTATTTACGATGGATACGAGTGA
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