mRNA_H-paniculata_contig2680.7330.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: D7FS62_ECTSI (tRNA pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS62_ECTSI) HSP 1 Score: 407 bits (1045), Expect = 6.920e-136 Identity = 195/298 (65.44%), Postives = 238/298 (79.87%), Query Frame = 3
Query: 363 RKDALSSENGEYRLHQDIFEGRKTRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGY 1256
R++A E GEYR+ +++ EG+KTRFVSRVMYDGTNY GFQLQ +G PTVQ VLE AL+ RFQ +VPV+ AGRTD+GVH+ GQA+HFDLPNA+ DL +L Y MNQMMPEDVRVWNMS+APP + Q +K PW MLNA GK YSYRL VG V +PLDRLYR HA++AA + INV L+Y+ +P+ VG HDFAGF+N+ K+A K G G+FNT R VYSA+++DEGGGN++L FHLDGALYRMVRNMVG +L+VAAGR+ EV+DEIF T VRD+ IY AP HGLTL+ V+YDGY
Sbjct: 114 RREARFDEEGEYRVFRELLEGKKTRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRLIYAAPAHGLTLDTVLYDGY 411
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: R7QN10_CHOCR (tRNA pseudouridine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN10_CHOCR) HSP 1 Score: 203 bits (517), Expect = 9.890e-58 Identity = 125/293 (42.66%), Postives = 172/293 (58.70%), Query Frame = 3
Query: 429 KTRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADT-----DLGELTYVMNQMMPEDVRVWNMSLAP---PC--TAEQADKRL---PWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGK---FNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGYE 1259
K R +RV YDGT Y G+Q Q++ QPTVQ LE AL R+F + V+GA RTD+GVHA GQA+HFD+P A + Y +NQM+P DVRV +S+AP PC T E + + PWH + NA GK+Y+YR+ V +PL RLYR H RA + + L+ E +FVG+HDF+ F N + GF N R ++SA V+ EG G ++ F ++GA+YRM+RN++GT+LSV+ G + +D +F + R AP GL LE VIYD +E
Sbjct: 53 KQRIRARVAYDGTLYRGWQYQTD-QPTVQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTNSTNPPP------GFVPPVLSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFASKDRRLVP-KSAPAKGLCLEKVIYDEWE 337
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A1Z5KP68_FISSO (tRNA pseudouridine synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP68_FISSO) HSP 1 Score: 196 bits (498), Expect = 2.830e-55 Identity = 116/297 (39.06%), Postives = 172/297 (57.91%), Query Frame = 3
Query: 435 RFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTD-LGELTYVMNQMMPEDVRVWNMSLAPPCTAE--QADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFAN--DADKKAAHKLAGGFGKFNTWREVYSAD--VVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGV---------------RDTSKIYCAPPHGLTLENVIYDGYE 1259
R+ +RV YDG + GFQLQ G+ TVQ LE L +R Q V ++GAGRTD+GVHA GQAIHFDL + ++ L ++ + +N M+P DV +WN+SLAP E Q ++ W+V+ N+ GK+YSYRLC+ V +PL+R +R H + +++ L+ ++ + G HDF FA +A+++ + + +T R VYSA+ V DE G ++ FHL GALY+ VRNMVGT + + + E ++ R+ +K APP GLTLE+V +D E
Sbjct: 23 RYRARVAYDGAGFHGFQLQPEGKRTVQGCLEDVLGQRLGQSVRLVGAGRTDTGVHARGQAIHFDLHSPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALEANQRRSGRTV------STVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFDEEE 313
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: F0Y1Q4_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q4_AURAN) HSP 1 Score: 196 bits (497), Expect = 3.070e-55 Identity = 120/284 (42.25%), Postives = 160/284 (56.34%), Query Frame = 3
Query: 432 TRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQ-QHVPVMGAGRTDSGVHATGQAIHFDLPNAD---TDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVG-DVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDA---DKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSK-IYCAPPHGLTLENVIYDGY 1256
TR+ RV YDGT + G+Q+Q G TVQ L AL RF +P +GA RTD+GVHA GQ H DLP A L L + +N+++P+D RV ++ AP QA + LPWH + NA+GK Y+YRL +PL RLYR H A ++ G + + + FVG HDFA FAN+A D A + +T R + SA ++DEGGG+ L F LDGALY+MVRN+VG ++VA G + + + + G R AP GL LE V YD Y
Sbjct: 33 TRYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHV---AYRDVDFGRLDDALSCFVGEHDFAAFANNAPGLDPSGAAR--------STTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A7S4MSL3_9STRA (tRNA pseudouridine synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSL3_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.050e-54 Identity = 122/318 (38.36%), Postives = 179/318 (56.29%), Query Frame = 3
Query: 366 KDALSSENGEYRLHQDIFEGRKTRFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGE-------LTYVMNQMMPEDVRVWNMSLAPPCTA----EQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFAN--DADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTG---------VRDTSKIYCAPPHGLTLENVIYDG 1253
K + S + ++ + + FEG R+ +RV YDGT ++G+Q Q+ G+ T+Q +E L+RRF + V ++GAGRTD+GVHA GQA HFDL + + + L +N M+ D+RVWN APP ++ E ++ WHV+ NA K+YSYR+ +PL R R H N+ L+ + F G HDF FA DA+++ + K+ G T R VY+ ++V+EG GN ++ F L GALY+MVRNM+GT L+VA GR+ + + E VR +K A P GLTLE+V +DG
Sbjct: 69 KASRSHDADDHEVRKVCFEG--IRYRARVAYDGTGFNGWQTQAKGR-TIQGDIEAVLSRRFDRPVRIVGAGRTDAGVHARGQAFHFDLRADEIGVADSKCFDLQLQRSLNSMLRRDIRVWNTCQAPPPSSYKNWEGIERNHKWHVIYNAEKKLYSYRISTAPYLDPLLRHTRTHVFDPT----NIELLRTALQHFEGTHDFRAFAGAIDANERKSGKVLG------TIRTVYAVNLVEEGNGNYRVDFLLKGALYKMVRNMMGTALAVAQGRLEEDRLLEFLHHDSSEGKVLQFVRKDNKCKPAAPEGLTLEHVYFDG 373
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A482SL84_9ARCH (tRNA pseudouridine synthase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL84_9ARCH) HSP 1 Score: 189 bits (480), Expect = 3.210e-52 Identity = 113/281 (40.21%), Postives = 155/281 (55.16%), Query Frame = 3
Query: 435 RFVSRVMYDGTNYSGFQLQSNGQP-TVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDL-----PNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSE-VVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGY 1256
R+V+RV YDGT Y G+Q QS + T+Q + L++R + V + GAGRTD GVHA GQ IHFDL N D+ + + +NQM+P D+RV+NMSLAPP T EQ P+H +A GK Y YR C P+ R H R + + + + FVG HDFA F N K+ +++T R +YS +DEG G ++ FH+ ALY+M+RNMVG +SVA G++ E +V + R + PP GL LE+V YD Y
Sbjct: 75 RYVARVSYDGTAYRGWQQQSQPRTKTIQGTINQNLSKRLSREVRITGAGRTDQGVHAKGQGIHFDLFDHEYLNPDS-IPNFQFKLNQMLPTDIRVYNMSLAPPGTVEQMLTGDPFHATKSAIGKKYIYRYCTNQFVEPIHRHIYTHFYR----EYDYSTLPDCLQCFVGPHDFACFGNKV-KQFVKDFETKPIEYDTMRTIYSIQHIDEGSGYYRIEFHIKSALYKMIRNMVGACVSVAKGQITKEDIVQMLVNPTQRINNPAIPVPPEGLILEHVYYDHY 349
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: L1IVY1_GUITC (tRNA pseudouridine synthase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IVY1_GUITC) HSP 1 Score: 179 bits (454), Expect = 2.210e-49 Identity = 105/257 (40.86%), Postives = 151/257 (58.75%), Query Frame = 3
Query: 369 DALSSEN-GEYRLHQDIFEGRKT-RFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCT-AEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSV 1130
D+L++ N G D + KT R+ VMYDGTNY+GFQLQ + QP++Q +LE L+R+ Q+ V+GAGRTDSGVH+ GQ +HFD TDL + + MN M+P DV++ + ++ WH + +A K+YSYR+ +G V +P+ R R H R +++ L+ EV F G HDF+ F+N + +T R +Y VV EG GN++L F LDGALY+MVRN+VGT+L+V
Sbjct: 9 DSLNAANMGNNATASDDSDLDKTFRYRCNVMYDGTNYNGFQLQ-HYQPSIQGLLETVLSRKLQRRTRVVGAGRTDSGVHSRGQVVHFDSSENITDLQKFQHGMNLMLPLDVKICGLEHVQDLDFVPHLNETRKWHAIYSARKKLYSYRIFIGKVQDPITRHSRHHEYR----NVDLDLLREVAAMFEGTHDFSAFSNTRGDNST---------MDTVRTIYRVGVVFEGEGNVRLDFELDGALYKMVRNIVGTILAV 251
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: A0A836CB05_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB05_9STRA) HSP 1 Score: 181 bits (459), Expect = 5.870e-49 Identity = 111/284 (39.08%), Postives = 155/284 (54.58%), Query Frame = 3
Query: 438 FVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTD--------LGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGV-----RDTSKIYCAPPHGLTLENVIYD 1250
+ ++VMYDG + GFQLQ TVQ LE AL +RFQ+ + V+GA RTD+GVH+ GQ +HFDLP + + L Y +NQM+PEDVRV+ ++ P + +Q + LPW +NA K+Y+YRL DV NPLD R H +++G++ + F++ ADK AA A G G +T R V + G + + LDGALY+MVR MVG ++VAAGR+ + V+ +G D S AP GLTLE V Y+
Sbjct: 80 YTAKVMYDGVGFRGFQLQPGNYRTVQGELEKALQKRFQRRISVLGASRTDAGVHSRGQVVHFDLPASGASALAYDPAAMALLQYCLNQMLPEDVRVYGLAPVPLPSPQQRQQGLPWSANVNARAKLYTYRLSFCDVTNPLDARQRAHYPPVLWP-VDLGVLEATLA----------FSSKADKSAALVAAAGRGDRDTVRTVVRITLRRGAPGYIDIDVLLDGALYKMVRYMVGAAVAVAAGRMDARVITTSLLSGNWEGSGADKSAAAPAPACGLTLEEVFYE 352
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: M2WXR7_GALSU (tRNA pseudouridine synthase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WXR7_GALSU) HSP 1 Score: 179 bits (454), Expect = 1.190e-48 Identity = 105/275 (38.18%), Postives = 157/275 (57.09%), Query Frame = 3
Query: 435 RFVSRVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNADTDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVPNPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFAN-DADKKAAHKLAGGFGKFNTWREVYSADVVDEGGGNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIYDGY 1256
R+ RV YDGT++SG+Q Q + +VQ VLE L++R + + ++GAGRTDSGVHA GQ HFD + +D L Y +N+M+ D+RV+++ P ++ D R WH + +A KVYSYR + +PL+R +R H R R N+ +Y+ F+G HDF F + + + K K N R +Y D+V E G + +L + L+GALYRM+RN+ ++ VA+ + + ++EI R + AP HGL LE VIYD Y
Sbjct: 73 RYRLRVAYDGTDFSGWQFQEKRR-SVQGVLEQVLSKRLNRSIRIIGAGRTDSGVHARGQVAHFDTVSF-SDCPHLEYTLNRMLSGDIRVYDLQQKEPISS---DPRNNWHAIFSARKKVYSYRFSIAKELDPLERRFRFHFYR----RCNLERLYDATKVFLGTHDFTSFCSRNTEMKEMEK--------NMCRTIYRIDLVHESGDSYRLEYELNGALYRMIRNITSSLFFVASDELTLDDLNEILHAKDRRRAP-KAAPAHGLCLERVIYDDY 329
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Match: B8CDY0_THAPS (tRNA pseudouridine synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY0_THAPS) HSP 1 Score: 177 bits (448), Expect = 1.490e-48 Identity = 110/281 (39.15%), Postives = 157/281 (55.87%), Query Frame = 3
Query: 447 RVMYDGTNYSGFQLQSNGQPTVQEVLEVALARRFQQHVPVMGAGRTDSGVHATGQAIHFDLPNAD------TDLGELTYVMNQMMPEDVRVWNMSLAPPCTAEQADKRLPWHVMLNASGKVYSYRLCVGDVP-NPLDRLYRVHANRAARARINVGLIYEVMPRFVGNHDFAGFANDADKKAAHKLAGGFGKFNTWREVYSADVVDEGG-------GNLKLVFHLDGALYRMVRNMVGTVLSVAAGRVGSEVVDEIFRTGVRDTSKIYCAPPHGLTLENVIY 1247
RV Y GT ++G+QLQ G+ TVQ +E L RRF + +PV+GAGRTD+GVHA GQAIHFDL + + T L + MN+MMP D+R++++ LAP PWH + A K YSYRL +G NP++R R H +++ + ++ +VG HDF F ++ A + G + NT R V+ +++ + GN ++ F L GALY+MVRNMVGT + V GR+ E + E+ + R + APP GLTLE V Y
Sbjct: 1 RVAYHGTPFNGWQLQP-GRSTVQGEIEEVLTRRFHRRIPVVGAGRTDAGVHARGQAIHFDLFHDEIPFKPPTPPEILQHSMNRMMPLDIRMFHLQLAP---------YTPWHAIQRAQSKWYSYRLTLGPTLWNPMERFTRTHF-----VHLDMERLESILQLYVGTHDFGAFGGQLEQNAKKRNDGK--RINTVRTVFRVELIQQEQLGFIGEEGNYRIDFLLKGALYKMVRNMVGTAMEVWLGRMKEEQLAELLKIPDRKDNPSKPAPPEGLTLECVYY 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2680.7330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2680.7330.1 >prot_H-paniculata_contig2680.7330.1 ID=prot_H-paniculata_contig2680.7330.1|Name=mRNA_H-paniculata_contig2680.7330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=416bp MLSLSLFESSYALRGGIAALAVTHKIAIAAGRQCRPRQFSTRETAFVHLIback to top mRNA from alignment at H-paniculata_contig2680:16827..19518- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2680.7330.1 ID=mRNA_H-paniculata_contig2680.7330.1|Name=mRNA_H-paniculata_contig2680.7330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2692bp|location=Sequence derived from alignment at H-paniculata_contig2680:16827..19518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2680:16827..19518- >mRNA_H-paniculata_contig2680.7330.1 ID=mRNA_H-paniculata_contig2680.7330.1|Name=mRNA_H-paniculata_contig2680.7330.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2496bp|location=Sequence derived from alignment at H-paniculata_contig2680:16827..19518- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |