mRNA_H-paniculata_contig26726.7309.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26726.7309.1
Unique NamemRNA_H-paniculata_contig26726.7309.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Match: A0A6H5LCT9_9PHAE (TTC5_OB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.090e-14
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 VKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKA 117
            VKL PSD D WTALGHCYWKKPDL AAKRCFL +L+KA
Sbjct:  197 VKLHPSDPDGWTALGHCYWKKPDLFAAKRCFLTSLEKA 234
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BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Match: D7G7M4_ECTSI (TTC5_OB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.730e-13
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 VKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKA 117
            VKL PS+ D WTAL HCYWKKPDL AAKRCFL +L+KA
Sbjct:   55 VKLHPSEPDGWTALAHCYWKKPDLFAAKRCFLTSLEKA 92
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BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Match: A0A7S2WS20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS20_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.740e-8
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    4 VKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKAS 120
            VKL PSD D+W  LGHC+WKK DL AA+ CF  A+ + +
Sbjct:    4 VKLSPSDLDAWNGLGHCFWKKGDLGAARDCFENAMARGA 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LCT9_9PHAE2.090e-1481.58TTC5_OB domain-containing protein n=1 Tax=Ectocarp... [more]
D7G7M4_ECTSI4.730e-1376.32TTC5_OB domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2WS20_9STRA6.740e-856.41Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26726contigH-paniculata_contig26726:188..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D7G7M4
Preferred nameTTC5
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0019219,GO:0019222,GO:0023051,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:1901796,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.chromatin binding
EggNOG OGs2C216@1,2QQ6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929802.5676062-CDS-H-paniculata_contig26726:187..3161622929802.5676062-CDS-H-paniculata_contig26726:187..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26726 188..316 +
1691481017.4879222-CDS-H-paniculata_contig26726:187..3161691481017.4879222-CDS-H-paniculata_contig26726:187..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26726 188..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26726.7309.1prot_H-paniculata_contig26726.7309.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26726 188..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26726.7309.1

>prot_H-paniculata_contig26726.7309.1 ID=prot_H-paniculata_contig26726.7309.1|Name=mRNA_H-paniculata_contig26726.7309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
KVKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKASRRR
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mRNA from alignment at H-paniculata_contig26726:188..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26726.7309.1 ID=mRNA_H-paniculata_contig26726.7309.1|Name=mRNA_H-paniculata_contig26726.7309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig26726:188..316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTAAAACTTCGACCGTCAGACTCCGATAGTTGGACCGCCCTGGGGCA
TTGCTACTGGAAGAAGCCAGACCTGCTTGCGGCCAAACGGTGTTTTCTGC
AAGCCTTGGACAAGGCGAGTCGAAGACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig26726:188..316+

>mRNA_H-paniculata_contig26726.7309.1 ID=mRNA_H-paniculata_contig26726.7309.1|Name=mRNA_H-paniculata_contig26726.7309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig26726:188..316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTAAAACTTCGACCGTCAGACTCCGATAGTTGGACCGCCCTGGGGCA
TTGCTACTGGAAGAAGCCAGACCTGCTTGCGGCCAAACGGTGTTTTCTGC
AAGCCTTGGACAAGGCGAGTCGAAGACGGAAGGTAAAACTTCGACCGTCA
GACTCCGATAGTTGGACCGCCCTGGGGCATTGCTACTGGAAGAAGCCAGA
CCTGCTTGCGGCCAAACGGTGTTTTCTGCAAGCCTTGGACAAGGCGAGTC
GAAGACGG
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