prot_H-paniculata_contig26726.7309.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig26726.7309.1
Unique Nameprot_H-paniculata_contig26726.7309.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length43
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Match: A0A6H5LCT9_9PHAE (TTC5_OB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.090e-14
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 
Query:    2 VKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKA 39
            VKL PSD D WTALGHCYWKKPDL AAKRCFL +L+KA
Sbjct:  197 VKLHPSDPDGWTALGHCYWKKPDLFAAKRCFLTSLEKA 234
[Close]
BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Match: D7G7M4_ECTSI (TTC5_OB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.730e-13
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0 
Query:    2 VKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKA 39
            VKL PS+ D WTAL HCYWKKPDL AAKRCFL +L+KA
Sbjct:   55 VKLHPSEPDGWTALAHCYWKKPDLFAAKRCFLTSLEKA 92
[Close]
BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Match: A0A7S2WS20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS20_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.740e-8
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 0 
Query:    2 VKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKAS 40
            VKL PSD D+W  LGHC+WKK DL AA+ CF  A+ + +
Sbjct:    4 VKLSPSDLDAWNGLGHCFWKKGDLGAARDCFENAMARGA 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26726.7309.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LCT9_9PHAE2.090e-1481.58TTC5_OB domain-containing protein n=1 Tax=Ectocarp... [more]
D7G7M4_ECTSI4.730e-1376.32TTC5_OB domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2WS20_9STRA6.740e-856.41Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..43
e-value: 2.4E-11
score: 45.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26726contigH-paniculata_contig26726:188..316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26726.7309.1mRNA_H-paniculata_contig26726.7309.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig26726 188..316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig26726.7309.1 ID=prot_H-paniculata_contig26726.7309.1|Name=mRNA_H-paniculata_contig26726.7309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
KVKLRPSDSDSWTALGHCYWKKPDLLAAKRCFLQALDKASRRR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf