prot_H-paniculata_contig2668.7288.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2668.7288.1
Unique Nameprot_H-paniculata_contig2668.7288.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length502
Homology
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BLAST of mRNA_H-paniculata_contig2668.7288.1 vs. uniprot
Match: D7FQ85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ85_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.780e-22
Identity = 81/183 (44.26%), Postives = 117/183 (63.93%), Query Frame = 0 
Query:  269 KAREQSKRLALEVARLRCSLNRTTAEWERERAARVQLEE-----IQR--KGGGSLATVQEEAERVSRLAQAERELLLRSEETARLAKNAADHVAQEATGRKIISGLEGIVKVQDRLIHALQTEMDTVNRARETAKEDARETKEQLSLWMADSLLWRNRAKRVQVALEQPGLPSPTEGRNDKSP 444
            K R+Q+KRLALEVARLR SL  TT+E   ER+ RV+LE+     +Q   +  G L   ++EAER +R A+ +   LL  E+  R  + A++ +A+E    K    + G+VKVQDRLI AL+TE++  +RAR+ A+++A E K+QL L++ D LLWRNRAK ++  L   G P P  G N ++P
Sbjct:  346 KTRDQAKRLALEVARLRSSLRTTTSELNTERSTRVRLEDEWWRRMQEWEEERGRLVASKQEAERTARTAEEDVARLLVKEKD-REGEVASERLARETRQEKADIAMNGVVKVQDRLIQALRTELEMTDRARQAAQDNALEAKDQLRLYVDDFLLWRNRAKHLEGLLIDLGHP-PQPGLNTETP 526
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BLAST of mRNA_H-paniculata_contig2668.7288.1 vs. uniprot
Match: A0A6H5KFY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.300e-21
Identity = 81/188 (43.09%), Postives = 115/188 (61.17%), Query Frame = 0 
Query:  259 GVEQERANTKKAREQSKRLALEVARLRCSLNRTTAEWERERAARVQLE--------EIQRKGGGSLATVQEEAERVSRLAQAERELLLRSEETARLAKNAADHVAQEATGRKIISGLEGIVKVQDRLIHALQTEMDTVNRARETAKEDARETKEQLSLWMADSLLWRNRAKRVQVAL------EQPGL 432
            G E   +  +  R+Q+KRLALEVARLR SL  TT+E   ER+ RV+LE        E + K G  +A+ QE AER +R A+ +   LL  E+  R  + A++ +AQE+   K    ++G+V VQDRLI AL+TE++  + AR  A+++A E K+QL L++ D LLWRNRAK ++  L       QPGL
Sbjct:  325 GDETRASEHQNTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKHGCLVASKQE-AERAARTAEEDMARLLVKEKN-REEEVASERLAQESRQEKADIAMKGVVTVQDRLIQALRTELELTDSARRAAQDNALEAKDQLRLYVNDFLLWRNRAKHLEALLIELGHAPQPGL 510
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2668.7288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ85_ECTSI1.780e-2244.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFY5_9PHAE4.300e-2143.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 378..405
NoneNo IPR availableCOILSCoilCoilcoord: 260..280
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 14..116
e-value: 1.6E-6
score: 29.8
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 50..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2668contigH-paniculata_contig2668:2894..7167 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2668.7288.1mRNA_H-paniculata_contig2668.7288.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2668 2894..7281 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2668.7288.1 ID=prot_H-paniculata_contig2668.7288.1|Name=mRNA_H-paniculata_contig2668.7288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=502bp
MCCFWQMVGDTGNDVQGDVKQRTIKVAWDLGTDLNDSDRVKRPYESCRPT
EEELVKAFSPFGDIIRVGIKDTCAVVLFKSSHAVLSAAEYSSWQNNYHWK
VRPMEATWEDASMMSSVIESKSGGILRLVMAQPANVVSRTDGAADIGRAQ
EVSAAASISTDNQPYGSVTLSATPHNTERIQVSVAPSSASGCDITLHDSI
GHDRSVSELPPDPMSAAASGMASPRIAVISMAEKNKDIQQATIKEPARGG
GRGGGVLPGVEQERANTKKAREQSKRLALEVARLRCSLNRTTAEWERERA
ARVQLEEIQRKGGGSLATVQEEAERVSRLAQAERELLLRSEETARLAKNA
ADHVAQEATGRKIISGLEGIVKVQDRLIHALQTEMDTVNRARETAKEDAR
ETKEQLSLWMADSLLWRNRAKRVQVALEQPGLPSPTEGRNDKSPSSQSPE
ADAIIAPVCDGTGKDSAAADGLDSPEARSRDTLKDISAGHQQADGGGGIG
EQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf