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Homology
BLAST of mRNA_H-paniculata_contig2668.7288.1 vs. uniprot
Match: D7FQ85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ85_ECTSI) HSP 1 Score: 112 bits (280), Expect = 2.630e-22 Identity = 81/183 (44.26%), Postives = 117/183 (63.93%), Query Frame = 1
Query: 919 KAREQSKRLALEVARLRCSLNRTTAEWERERAARVQLEE-----IQR--KGGGSLATVQEEAERVSRLAQAERELLLRSEETARLAKNAADHVAQEATGRKIISGLEGIVKVQDRLIHALQTEMDTVNRARETAKEDARETKEQLSLWMADSLLWRNRAKRVQVALEQPGLPSPTEGRNDKSP 1446
K R+Q+KRLALEVARLR SL TT+E ER+ RV+LE+ +Q + G L ++EAER +R A+ + LL E+ R + A++ +A+E K + G+VKVQDRLI AL+TE++ +RAR+ A+++A E K+QL L++ D LLWRNRAK ++ L G P P G N ++P
Sbjct: 346 KTRDQAKRLALEVARLRSSLRTTTSELNTERSTRVRLEDEWWRRMQEWEEERGRLVASKQEAERTARTAEEDVARLLVKEKD-REGEVASERLARETRQEKADIAMNGVVKVQDRLIQALRTELEMTDRARQAAQDNALEAKDQLRLYVDDFLLWRNRAKHLEGLLIDLGHP-PQPGLNTETP 526
BLAST of mRNA_H-paniculata_contig2668.7288.1 vs. uniprot
Match: A0A6H5KFY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY5_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.170e-21 Identity = 81/188 (43.09%), Postives = 115/188 (61.17%), Query Frame = 1
Query: 889 GVEQERANTKKAREQSKRLALEVARLRCSLNRTTAEWERERAARVQLE--------EIQRKGGGSLATVQEEAERVSRLAQAERELLLRSEETARLAKNAADHVAQEATGRKIISGLEGIVKVQDRLIHALQTEMDTVNRARETAKEDARETKEQLSLWMADSLLWRNRAKRVQVAL------EQPGL 1410
G E + + R+Q+KRLALEVARLR SL TT+E ER+ RV+LE E + K G +A+ QE AER +R A+ + LL E+ R + A++ +AQE+ K ++G+V VQDRLI AL+TE++ + AR A+++A E K+QL L++ D LLWRNRAK ++ L QPGL
Sbjct: 325 GDETRASEHQNTRDQAKRLALEVARLRSSLRATTSELNTERSTRVRLEDEWWRRMQEWEEKHGCLVASKQE-AERAARTAEEDMARLLVKEKN-REEEVASERLAQESRQEKADIAMKGVVTVQDRLIQALRTELELTDSARRAAQDNALEAKDQLRLYVNDFLLWRNRAKHLEALLIELGHAPQPGL 510
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_007070.1 |
| Exons | 5 |
| Model size | 1620 |
| Cds size | 1506 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2668.7288.1 >prot_H-paniculata_contig2668.7288.1 ID=prot_H-paniculata_contig2668.7288.1|Name=mRNA_H-paniculata_contig2668.7288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=502bp
MCCFWQMVGDTGNDVQGDVKQRTIKVAWDLGTDLNDSDRVKRPYESCRPT
EEELVKAFSPFGDIIRVGIKDTCAVVLFKSSHAVLSAAEYSSWQNNYHWK
VRPMEATWEDASMMSSVIESKSGGILRLVMAQPANVVSRTDGAADIGRAQ
EVSAAASISTDNQPYGSVTLSATPHNTERIQVSVAPSSASGCDITLHDSI
GHDRSVSELPPDPMSAAASGMASPRIAVISMAEKNKDIQQATIKEPARGG
GRGGGVLPGVEQERANTKKAREQSKRLALEVARLRCSLNRTTAEWERERA
ARVQLEEIQRKGGGSLATVQEEAERVSRLAQAERELLLRSEETARLAKNA
ADHVAQEATGRKIISGLEGIVKVQDRLIHALQTEMDTVNRARETAKEDAR
ETKEQLSLWMADSLLWRNRAKRVQVALEQPGLPSPTEGRNDKSPSSQSPE
ADAIIAPVCDGTGKDSAAADGLDSPEARSRDTLKDISAGHQQADGGGGIG
EQ back to topmRNA from alignment at H-paniculata_contig2668:2894..7281- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2668.7288.1 ID=mRNA_H-paniculata_contig2668.7288.1|Name=mRNA_H-paniculata_contig2668.7288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4388bp|location=Sequence derived from alignment at H-paniculata_contig2668:2894..7281- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTATATTGTCGTGTACAATTGTACTATATGGCCGATAGATGCGACATTA
AGCGTACATCCACCTCCCTAAATCTCCTGTGTCGAAACCTCCCCCAGTAT
TTCTACACCACTGCATGTGCTGTTTTTGGCAGATGGTTGGAGACACTGGT
AATGATGTACAGGGCGACGTGAAGCAGAGGACAATCAAGGTCGCTTGGGA
TCTTGGTACTGATCTCAACGACAGTGATCGTGTCAAGCGACCTTACGAAA
GCTGTCGACCCACAGAGGAGGAACTAGTCAAGGCCTTCTCCCCCTTTGGA
GACATCATTCGCGTTGGAATCAAGGTACGGGTGTTATGCCTCTAAGCTCT
GACATACGAGGAAGCGAAGAAGCCTGGCAGTAGAACATCCCCATAATCCA
TCTACCCCGGCGTAAAACTCGCCTGCTCAGTCAATTGTTTGTGCATCCAG
CCCAAACAAGATCCCCCGCAAGTTCGTTTGGACTCCAACCCTGATGTAGG
TTTCTGTACTCAACTGCCGACAAAGCATGTAGAAGAGTACTCGATAATTC
CATGGAAAATAGGATGACTCTGTTAAGTGAGATCCACAAACGCGTCATAT
GGCAACCAGTACCTTACCCGCCGTGGATAAGAGCGCGTTTCTCTCTCTCC
ACTGATATCTTGGGGTTTGCCGTAAACGATGCGTTTCTCTCGGACCATAG
GACACCTGCGCAGTCGTCCTGTTCAAGTCTTCCCACGCGGTGCTTTCGGC
TGCAGAATATTCGTCTTGGCAGAACAATTATCACTGGAAAGTAAGACCGA
TGGAAGCGACTTGGGAGGATGCAAGCATGATGTCCTCGGTGATTGAAAGC
AAATCAGGCGGGATTCTTCGACTCGTCATGGCGCAACCCGCTAACGTCGT
CAGCCGAACGGATGGTGCTGCTGACATTGGTAGGGCTCAGGAGGTTTCAG
CTGCTGCTTCAATTTCAACCGACAACCAACCGTACGGCAGTGTAACGTTG
TCGGCAACGCCCCATAATACTGAACGCATACAGGTGTCCGTTGCCCCCTC
CTCCGCCTCCGGCTGTGACATCACCTTGCATGACTCCATTGGACACGATC
GCAGTGTTTCGGAGTTGCCGCCGGACCCAATGTCAGCGGCTGCTTCTGGC
ATGGCTTCTCCTCGTATCGCAGTAATCTCGATGGCTGAAAAGAACAAGGA
TATCCAGCAGGCAACGATCAAAGAACCCGCTCGAGGAGGAGGAAGAGGAG
GAGGCGTGCTGCCCGGCGTCGAACAGGAAAGGGCAAATACGAAAAAGGCT
AGGGAACAGTCGAAGCGGCTCGCGCTCGAGGTCGCGCGTCTTCGATGCTC
TTTGAATAGGACGACGGCGGAGTGGGAGCGGGAGCGTGCTGCCCGCGTAC
AACTGGAGGTATGTTCATACTACATACATGGTAGATTTTGGTATATTTTT
GTGACCAAAACTATATTACGCGTTCTACGCCACTAGGCCACATTTGTCTT
CTTGTCGCCGATTGTCAGGTCTTTTGCGTTGGGAGTTTGCCAGTCATTAC
TCCACCGTATGTGAAGAGCATGCTGAAATCATCGTTCCGCGACGTATACT
AACAAGACGGCCGACATTCTGCATTAAACTTGGCCAAGTGTCCCGCTCAT
TGCTCGCACCCGTAGTGACATGGTAAATCACACTATTTATGAACACTACT
CTTCCGACCTTATGTTGTACGACCTCTGTCCCATAAGTCTACCTTATAAC
GGTTTTCTGAGAATTAATTTTGCAACTTTGGGTTTCGTGATAAATAAAGC
ATACCATTCGAAGCCTACACGTTCAGCTTCTATGTGGATGTCTTGAAAAA
AAAAAATCGAAACGTTTGAAAACCGGGTATCTCAACACGTTTCTTTTTTT
CGGAATGGCAGATTTTGCTAAAACAGTCGAATAGGCCGAAATCGGCTGAA
AATCATGGTTTCCCATTGTTTTGCAAACCATTACATGTACGTAGAGTTTC
CAGACGAGCAATAGCGCAAACTAAGCCCCTCAAGCTTACCTATCTGCTCG
TCGCGAAAGGGGTGACGAGTACGAGGTCGACGTTACCATCGACAGCTAGT
GGTACACGGAGGTTTTCTTCCCCACTCTCAAGGAAAAGATGCCAGGTTGG
AGAAGGAAGTGATCGTGCAGCAGGACAGCGCGATCCCGCACACGGGCAAG
GGCACGTTGAGGAAGCTAACCCTGGCAGGGAGGGAGGACGGATAGAACAT
CAAGCTCGTAACGCAGCCGGCGCAGTCTCCCCATTTCAATATCAGCTATT
CGGAGTTTTTCGTAACCCTGAATTTAGAGTGTGAAGGGAGCAGTACCGTA
CCGTTAGGCGCCCTTGTAGAGGGGGCTAACAGCATGTACGGCGAGTATGA
TGCGGATACGCTAGAACTGGTTTTGGCAGAGCCTCTTCAAGCAGTACAAC
TAAGTGTTGAAAGCGCTGGGGGAAACAATTAAGGCATTGGGCATACCAGG
AGAGGGAAAAGGCTTTGGTCCCGATTGACAGAGCCGCTCACGACGCGACC
TTCTCTAGTGCATTGATGGGGAGGATGGCAGTAATGAACGATGATTCATT
GTACCACATAGTATGAAACAACATGGGATATAACGCGAGAAAGCATTTCT
TAATCGGAGGTCTCCTTGAGACTTTATCAACTATTAACCATATTGTTCAG
CCGATTTGGCCTACTCGGTTGTTTGTGCAAAATTCTCCATTTTGAAGAAA
AACCTATGTGTTGAGATACCCGTTTTTCAGCCATTTCGAATTCAAAAAAA
GAATCGAAGGTATCTGCGTGCAAGCTGAACGTGTAGGCTTTCGAATGATA
TGCTCTATTTTTCACGAAACCTAAAATTGCAAAAAACATTTACAAAATAC
TAGACTTATGGGCCAACGATATTATTTCTTTGTCGCCGCGCCTGGGGTAT
TGGCACACCTTTATACTGCAGGAGATTCAACGCAAGGGAGGTGGCTCGCT
CGCAACGGTGCAAGAAGAAGCAGAGCGGGTGTCAAGGTTGGCGCAAGCAG
AAAGAGAATTACTGCTTCGCAGCGAGGTACTGCTGGAGGTCGGGACTGGT
GAATGTACACGTGGGCGCGTGCCGGGGTGTGTGCGTGTGATTAAGCGTGA
ACACTGCTTGTCACTGACATCGAACAAATTTCCTGAATGTAGAGCTCTAA
CCAATCAAGGCATCGCGGATGCATGAATTATTTTCGTATGCAATTGTACC
ACCCAGATGGAACCAGAACAGCACCAAATCTGCATTAAGAGAAAGTCCAC
GCGTGTGTGCGAGTGACTAAAATGCACAAGTTTTCTTTTACGGAGTTATC
ACTTGCCTTCGATATCGGAGTCTGATACGATTGAAACCACAAAGTAATCG
TACAGTACCGAACTAGTCAGACGTTTTTTTAGCGGTGCGGTCTGTCAGTC
CCAGATTTACTCCGAAGTGTAAGTGCATCTTGAGAGGAGCTCTGCCTTCG
CCAAGAGTCCGTGAACAACCCAGACGTGTGCGCGCACAAAGACGGTGCTG
CAGGACGCTTTTCTTTATTTTTCTTAGCGTCGCGTCACCTCGCCTAACGT
TCCCGCTCCACTCTGTGAGCCGACAGCAACGTAGCTCTTTATCCACCGTA
TCCGCTAAAGGAAACGGCCCGTCTGGCGAAGAATGCGGCTGACCACGTTG
CACAGGAAGCGACGGGACGAAAGATCATATCTGGATTGGAAGGCATCGTG
AAGGTTCAGGACCGCCTTATACACGCGCTGCAGACGGAGATGGACACGGT
GAACAGGGCTCGAGAAACGGCAAAGGTGACCTCGGGGATGCGTGTACCTT
GACGAGATCGGGACGGAGGTATACATCCTCAACTTTATTTTTCTTGACTC
GGTCAACTCCCCCTGTATCAGTAGGTCCACTATCAGGTATAGAGACCATG
GAGGAGCGGGGTGGTGTGATACGACACCTCAAAGTAGTTGGGATGAAGTC
GCAGTGTCGCTCGATGCCCTGAACCTCCCGGTTGCCTTGTTCTGTCGACG
GTACATGACACATGATGCAGGAAGACGCGCGGGAGACCAAGGAGCAGCTT
TCTCTATGGATGGCCGATTCTCTCCTTTGGCGAAATCGTGCAAAGCGTGT
ACAAGTAGCTTTGGAGCAACCCGGTCTGCCTTCGCCAACAGAAGGTCGGA
ATGACAAGTCGCCCAGCAGCCAATCGCCCGAGGCAGACGCAATCATAGCC
CCTGTTTGCGACGGCACAGGGAAAGACAGTGCTGCCGCCGATGGTCTGGA
CAGTCCCGAGGCTAGGAGCCGCGACACTCTGAAGGATATATCAGCTGGCC
ATCAGCAGGCCGACGGTGGTGGCGGAATCGGAGAGCAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2668:2894..7281- >mRNA_H-paniculata_contig2668.7288.1 ID=mRNA_H-paniculata_contig2668.7288.1|Name=mRNA_H-paniculata_contig2668.7288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3012bp|location=Sequence derived from alignment at H-paniculata_contig2668:2894..7281- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTGTTTTTGGCAGATGGTTGGAGACACTGGTAATGATGTACAGGG
CGACGTGAAGCAGAGGACAATCAAGGTCGCTTGGGATCTTGGTACTGATC
TCAACGACAGTGATCGTGTCAAGCGACCTTACGAAAGCTGTCGACCCACA
GAGGAGGAACTAGTCAAGGCCTTCTCCCCCTTTGGAGACATCATTCGCGT
TGGAATCAAGATGTGCTGTTTTTGGCAGATGGTTGGAGACACTGGTAATG
ATGTACAGGGCGACGTGAAGCAGAGGACAATCAAGGTCGCTTGGGATCTT
GGTACTGATCTCAACGACAGTGATCGTGTCAAGCGACCTTACGAAAGCTG
TCGACCCACAGAGGAGGAACTAGTCAAGGCCTTCTCCCCCTTTGGAGACA
TCATTCGCGTTGGAATCAAGGACACCTGCGCAGTCGTCCTGTTCAAGTCT
TCCCACGCGGTGCTTTCGGCTGCAGAATATTCGTCTTGGCAGAACAATTA
TCACTGGAAAGTAAGACCGATGGAAGCGACTTGGGAGGATGCAAGCATGA
TGTCCTCGGTGATTGAAAGCAAATCAGGCGGGATTCTTCGACTCGTCATG
GCGCAACCCGCTAACGTCGTCAGCCGAACGGATGGTGCTGCTGACATTGG
TAGGGCTCAGGAGGTTTCAGCTGCTGCTTCAATTTCAACCGACAACCAAC
CGTACGGCAGTGTAACGTTGTCGGCAACGCCCCATAATACTGAACGCATA
CAGGTGTCCGTTGCCCCCTCCTCCGCCTCCGGCTGTGACATCACCTTGCA
TGACTCCATTGGACACGATCGCAGTGTTTCGGAGTTGCCGCCGGACCCAA
TGTCAGCGGCTGCTTCTGGCATGGCTTCTCCTCGTATCGCAGTAATCTCG
ATGGCTGAAAAGAACAAGGATATCCAGCAGGCAACGATCAAAGAACCCGC
TCGAGGAGGAGGAAGAGGAGGAGGCGTGCTGCCCGGCGTCGAACAGGAAA
GGGCAAATACGAAAAAGGCTAGGGAACAGTCGAAGCGGCTCGCGCTCGAG
GTCGCGCGTCTTCGATGCTCTTTGAATAGGACGACGGCGGAGTGGGAGCG
GGAGCGTGCTGCCCGCGTACAACTGGAGGACACCTGCGCAGTCGTCCTGT
TCAAGTCTTCCCACGCGGTGCTTTCGGCTGCAGAATATTCGTCTTGGCAG
AACAATTATCACTGGAAAGTAAGACCGATGGAAGCGACTTGGGAGGATGC
AAGCATGATGTCCTCGGTGATTGAAAGCAAATCAGGCGGGATTCTTCGAC
TCGTCATGGCGCAACCCGCTAACGTCGTCAGCCGAACGGATGGTGCTGCT
GACATTGGTAGGGCTCAGGAGGTTTCAGCTGCTGCTTCAATTTCAACCGA
CAACCAACCGTACGGCAGTGTAACGTTGTCGGCAACGCCCCATAATACTG
AACGCATACAGGTGTCCGTTGCCCCCTCCTCCGCCTCCGGCTGTGACATC
ACCTTGCATGACTCCATTGGACACGATCGCAGTGTTTCGGAGTTGCCGCC
GGACCCAATGTCAGCGGCTGCTTCTGGCATGGCTTCTCCTCGTATCGCAG
TAATCTCGATGGCTGAAAAGAACAAGGATATCCAGCAGGCAACGATCAAA
GAACCCGCTCGAGGAGGAGGAAGAGGAGGAGGCGTGCTGCCCGGCGTCGA
ACAGGAAAGGGCAAATACGAAAAAGGCTAGGGAACAGTCGAAGCGGCTCG
CGCTCGAGGTCGCGCGTCTTCGATGCTCTTTGAATAGGACGACGGCGGAG
TGGGAGCGGGAGCGTGCTGCCCGCGTACAACTGGAGGAGATTCAACGCAA
GGGAGGTGGCTCGCTCGCAACGGTGCAAGAAGAAGCAGAGCGGGTGTCAA
GGTTGGCGCAAGCAGAAAGAGAATTACTGCTTCGCAGCGAGGAGATTCAA
CGCAAGGGAGGTGGCTCGCTCGCAACGGTGCAAGAAGAAGCAGAGCGGGT
GTCAAGGTTGGCGCAAGCAGAAAGAGAATTACTGCTTCGCAGCGAGGAAA
CGGCCCGTCTGGCGAAGAATGCGGCTGACCACGTTGCACAGGAAGCGACG
GGACGAAAGATCATATCTGGATTGGAAGGCATCGTGAAGGTTCAGGACCG
CCTTATACACGCGCTGCAGACGGAGATGGACACGGTGAACAGGGCTCGAG
AAACGGCAAAGGAAACGGCCCGTCTGGCGAAGAATGCGGCTGACCACGTT
GCACAGGAAGCGACGGGACGAAAGATCATATCTGGATTGGAAGGCATCGT
GAAGGTTCAGGACCGCCTTATACACGCGCTGCAGACGGAGATGGACACGG
TGAACAGGGCTCGAGAAACGGCAAAGGAAGACGCGCGGGAGACCAAGGAG
CAGCTTTCTCTATGGATGGCCGATTCTCTCCTTTGGCGAAATCGTGCAAA
GCGTGTACAAGTAGCTTTGGAGCAACCCGGTCTGCCTTCGCCAACAGAAG
GTCGGAATGACAAGTCGCCCAGCAGCCAATCGCCCGAGGCAGACGCAATC
ATAGCCCCTGTTTGCGACGGCACAGGGAAAGACAGTGCTGCCGCCGATGG
TCTGGACAGTCCCGAGGCTAGGAGCCGCGACACTCTGAAGGATATATCAG
CTGGCCATCAGCAGGCCGACGGTGGTGGCGGAATCGGAGAGCAGGAAGAC
GCGCGGGAGACCAAGGAGCAGCTTTCTCTATGGATGGCCGATTCTCTCCT
TTGGCGAAATCGTGCAAAGCGTGTACAAGTAGCTTTGGAGCAACCCGGTC
TGCCTTCGCCAACAGAAGGTCGGAATGACAAGTCGCCCAGCAGCCAATCG
CCCGAGGCAGACGCAATCATAGCCCCTGTTTGCGACGGCACAGGGAAAGA
CAGTGCTGCCGCCGATGGTCTGGACAGTCCCGAGGCTAGGAGCCGCGACA
CTCTGAAGGATATATCAGCTGGCCATCAGCAGGCCGACGGTGGTGGCGGA
ATCGGAGAGCAG back to top
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