mRNA_H-paniculata_contig26599.7262.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26599.7262.1
Unique NamemRNA_H-paniculata_contig26599.7262.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26599.7262.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 55.1 bits (131), Expect = 1.710e-5
Identity = 46/166 (27.71%), Postives = 76/166 (45.78%), Query Frame = 1 
Query:   19 QRDSPNVYCRRCGKRGHDLYAC-PQLIDEDACLAEAEIEIELEEALKVDLGADAFIASYIALTSTTGKEEVLPVDSEGLEYHEVGGMGIWICDNGATKHMTHDSDFLFDYQQCNG-HARLAGGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLG 510
            +R    + C  C K GH +  C  +  DED  +   E +   E   +      AF A  I       ++E+L      LE  +V     WI D+GA++HMTH S+++ + Q     H  L  G +  + G G +++Q   D + +   L  V ++P L+ +L S+G
Sbjct:  221 ERSKKEIECFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNESNTEA-----AFSAEVI-------EKEIL-----NLEVKDV-----WILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26599.7262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME1.710e-527.71Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26599contigH-paniculata_contig26599:2212..2799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.5
Seed ortholog evalue1e-09
Seed eggNOG ortholog3712.Bo1g005190.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929797.545849-CDS-H-paniculata_contig26599:2211..27991622929797.545849-CDS-H-paniculata_contig26599:2211..2799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26599 2212..2799 -
1691481015.187396-CDS-H-paniculata_contig26599:2211..27991691481015.187396-CDS-H-paniculata_contig26599:2211..2799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26599 2212..2799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26599.7262.1prot_H-paniculata_contig26599.7262.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26599 2212..2799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26599.7262.1

>prot_H-paniculata_contig26599.7262.1 ID=prot_H-paniculata_contig26599.7262.1|Name=mRNA_H-paniculata_contig26599.7262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
RSKDHLQRDSPNVYCRRCGKRGHDLYACPQLIDEDACLAEAEIEIELEEA
LKVDLGADAFIASYIALTSTTGKEEVLPVDSEGLEYHEVGGMGIWICDNG
ATKHMTHDSDFLFDYQQCNGHARLAGGNRLPIEGVGMLFLQFRFDSEVVL
MKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVL
back to top

mRNA from alignment at H-paniculata_contig26599:2212..2799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26599.7262.1 ID=mRNA_H-paniculata_contig26599.7262.1|Name=mRNA_H-paniculata_contig26599.7262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig26599:2212..2799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACTCCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGTACGCGTGCCCCCAGCTCATCGATG
AAGATGCTTGTTTGGCTGAAGCTGAAATTGAGATTGAACTTGAAGAGGCG
CTGAAGGTTGATCTGGGCGCCGACGCGTTCATCGCGTCATACATCGCGTT
GACTTCCACCACAGGCAAGGAAGAGGTTTTGCCTGTGGACTCTGAGGGTT
TAGAATATCATGAGGTGGGGGGGATGGGGATCTGGATTTGTGATAATGGT
GCAACGAAACACATGACCCATGATTCAGACTTTCTTTTTGATTATCAGCA
ATGTAATGGGCATGCACGCCTCGCAGGTGGTAACCGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTG
ATGAAGTTAACTCAGGTTGCGTTCATACCACTTCTCAGTCATCACCTTTT
ATCTCTCGGGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCG
AAGGGCTCAGAATTAACCTTAAAACAGGAAGAGTTCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26599:2212..2799-

>mRNA_H-paniculata_contig26599.7262.1 ID=mRNA_H-paniculata_contig26599.7262.1|Name=mRNA_H-paniculata_contig26599.7262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig26599:2212..2799- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACTCCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGTACGCGTGCCCCCAGCTCATCGATG
AAGATGCTTGTTTGGCTGAAGCTGAAATTGAGATTGAACTTGAAGAGGCG
CTGAAGGTTGATCTGGGCGCCGACGCGTTCATCGCGTCATACATCGCGTT
GACTTCCACCACAGGCAAGGAAGAGGTTTTGCCTGTGGACTCTGAGGGTT
TAGAATATCATGAGGTGGGGGGGATGGGGATCTGGATTTGTGATAATGGT
GCAACGAAACACATGACCCATGATTCAGACTTTCTTTTTGATTATCAGCA
ATGTAATGGGCATGCACGCCTCGCAGGTGGTAACCGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTG
ATGAAGTTAACTCAGGTTGCGTTCATACCACTTCTCAGTCATCACCTTTT
ATCTCTCGGGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCG
AAGGGCTCAGAATTAACCTTAAAACAGGAAGAGTTCTGCGCTCCAAGGAT
CACCTTCAACGGGACTCCCCCAACGTGTACTGTCGGCGATGTGGTAAGCG
TGGTCACGACTTGTACGCGTGCCCCCAGCTCATCGATGAAGATGCTTGTT
TGGCTGAAGCTGAAATTGAGATTGAACTTGAAGAGGCGCTGAAGGTTGAT
CTGGGCGCCGACGCGTTCATCGCGTCATACATCGCGTTGACTTCCACCAC
AGGCAAGGAAGAGGTTTTGCCTGTGGACTCTGAGGGTTTAGAATATCATG
AGGTGGGGGGGATGGGGATCTGGATTTGTGATAATGGTGCAACGAAACAC
ATGACCCATGATTCAGACTTTCTTTTTGATTATCAGCAATGTAATGGGCA
TGCACGCCTCGCAGGTGGTAACCGTCTCCCGATCGAAGGAGTTGGCATGC
TGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACT
CAGGTTGCGTTCATACCACTTCTCAGTCATCACCTTTTATCTCTCGGGAA
ATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAA
TTAACCTTAAAACAGGAAGAGTTCTG
back to top