prot_H-paniculata_contig2646.7221.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2646.7221.1
Unique Nameprot_H-paniculata_contig2646.7221.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length113
Homology
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.220e-17
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+   G +   ELLA L     ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:  386 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADGGER-GELLASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDV 497          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.700e-17
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRT-KGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L   GF+Q   DPCVFRK+VDGEV+ +I+IYVD++L+   +G +  +EL A L     ++DLG   ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:   15 LTQSGREWGFEAADALIENGFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDR--EELFASLNKKFPVKDLGECTWYDGCAIAMDVENCITKLSQTAYIESMLTRFDV 126          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.080e-16
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+     +  +EL A L  +  ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:   15 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDV 126          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.130e-16
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+     +  +EL A L     ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:   15 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDV 126          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.240e-16
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+     +  +EL A L     ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:   15 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDV 126          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.970e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:   55 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 166          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.170e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  268 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 379          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.180e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  524 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 635          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.230e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  448 LEQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 559          
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.320e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 0
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 113
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  701 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 812          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFZ2_9PHAE4.220e-1740.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L296_9PHAE7.700e-1740.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE1.080e-1638.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE2.130e-1638.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE3.240e-1638.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE3.970e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE5.170e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE5.180e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE5.230e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE5.320e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..112
e-value: 1.1E-13
score: 51.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2646contigH-paniculata_contig2646:11404..11742 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2646.7221.1mRNA_H-paniculata_contig2646.7221.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2646 11404..11742 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2646.7221.1 ID=prot_H-paniculata_contig2646.7221.1|Name=mRNA_H-paniculata_contig2646.7221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDEL
LIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQ
HLYARSMAERFGI
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2