mRNA_H-paniculata_contig2646.7221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2646.7221.1
Unique NamemRNA_H-paniculata_contig2646.7221.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JFZ2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ2_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.220e-17
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+   G +   ELLA L     ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:  386 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADGGER-GELLASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDV 497
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.700e-17
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRT-KGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L   GF+Q   DPCVFRK+VDGEV+ +I+IYVD++L+   +G +  +EL A L     ++DLG   ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:   15 LTQSGREWGFEAADALIENGFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDR--EELFASLNKKFPVKDLGECTWYDGCAIAMDVENCITKLSQTAYIESMLTRFDV 126
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.080e-16
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+     +  +EL A L  +  ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:   15 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDV 126
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.130e-16
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+     +  +EL A L     ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:   15 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDV 126
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.240e-16
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L   G++Q   DPCVFRK+VDGEV+ +I+IYVD++L+     +  +EL A L     ++DLG   ++  C I  D E    K+ Q  Y  SM +RF +
Sbjct:   15 LKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGER-EELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDV 126
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 3.970e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:   55 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 166
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.170e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  268 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 379
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.180e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  524 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 635
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.230e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  448 LEQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 559
[Close]
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.320e-16
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 
Query:    1 LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDELLIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQHLYARSMAERFGI 339
            L Q+GR W  +    L + G++Q   DPC+FRK+VDGEV+ +I+IYVD++++     +  +ELLA L     ++DLG+  ++  C I  D E    K+ Q  Y  SM  RF +
Sbjct:  701 LKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEER-EELLASLQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNV 812
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2646.7221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFZ2_9PHAE4.220e-1740.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L296_9PHAE7.700e-1740.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE1.080e-1638.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE2.130e-1638.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE3.240e-1638.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE3.970e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE5.170e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE5.180e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE5.230e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE5.320e-1638.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2646contigH-paniculata_contig2646:11404..11742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue8.9e-11
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.8055089-CDS-H-paniculata_contig2646:11403..117421622929791.8055089-CDS-H-paniculata_contig2646:11403..11742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2646 11404..11742 -
1691481012.5928137-CDS-H-paniculata_contig2646:11403..117421691481012.5928137-CDS-H-paniculata_contig2646:11403..11742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2646 11404..11742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2646.7221.1prot_H-paniculata_contig2646.7221.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2646 11404..11742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2646.7221.1

>prot_H-paniculata_contig2646.7221.1 ID=prot_H-paniculata_contig2646.7221.1|Name=mRNA_H-paniculata_contig2646.7221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
LVQAGRCWSIKVTADLTAKGFKQSHADPCVFRKIVDGEVITVIIIYVDEL
LIRTKGPKMMDELLADLGSDHKLEDLGNARYHLRCHITRDREKRRLKIEQ
HLYARSMAERFGI
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mRNA from alignment at H-paniculata_contig2646:11404..11742-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2646.7221.1 ID=mRNA_H-paniculata_contig2646.7221.1|Name=mRNA_H-paniculata_contig2646.7221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig2646:11404..11742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGTACAAGCCGGCAGGTGCTGGAGTATAAAGGTTACCGCGGATCTCAC
GGCGAAAGGGTTCAAGCAATCGCACGCCGATCCGTGTGTGTTCCGCAAAA
TCGTGGATGGGGAGGTGATCACAGTGATAATAATATACGTGGACGAGCTT
CTGATCAGGACCAAGGGACCCAAAATGATGGACGAGTTGCTGGCAGACCT
GGGATCGGATCACAAGCTTGAAGACCTGGGAAATGCAAGGTACCATTTAA
GATGCCACATCACCCGCGATAGGGAAAAGAGGAGGCTCAAGATCGAGCAG
CACCTCTACGCGAGGTCAATGGCCGAGCGTTTCGGGATA
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Coding sequence (CDS) from alignment at H-paniculata_contig2646:11404..11742-

>mRNA_H-paniculata_contig2646.7221.1 ID=mRNA_H-paniculata_contig2646.7221.1|Name=mRNA_H-paniculata_contig2646.7221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig2646:11404..11742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGTACAAGCCGGCAGGTGCTGGAGTATAAAGGTTACCGCGGATCTCAC
GGCGAAAGGGTTCAAGCAATCGCACGCCGATCCGTGTGTGTTCCGCAAAA
TCGTGGATGGGGAGGTGATCACAGTGATAATAATATACGTGGACGAGCTT
CTGATCAGGACCAAGGGACCCAAAATGATGGACGAGTTGCTGGCAGACCT
GGGATCGGATCACAAGCTTGAAGACCTGGGAAATGCAAGGTACCATTTAA
GATGCCACATCACCCGCGATAGGGAAAAGAGGAGGCTCAAGATCGAGCAG
CACCTCTACGCGAGGTCAATGGCCGAGCGTTTCGGGATATTGGTACAAGC
CGGCAGGTGCTGGAGTATAAAGGTTACCGCGGATCTCACGGCGAAAGGGT
TCAAGCAATCGCACGCCGATCCGTGTGTGTTCCGCAAAATCGTGGATGGG
GAGGTGATCACAGTGATAATAATATACGTGGACGAGCTTCTGATCAGGAC
CAAGGGACCCAAAATGATGGACGAGTTGCTGGCAGACCTGGGATCGGATC
ACAAGCTTGAAGACCTGGGAAATGCAAGGTACCATTTAAGATGCCACATC
ACCCGCGATAGGGAAAAGAGGAGGCTCAAGATCGAGCAGCACCTCTACGC
GAGGTCAATGGCCGAGCGTTTCGGGATA
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