mRNA_H-paniculata_contig26355.7198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.780e-53 Identity = 109/235 (46.38%), Postives = 146/235 (62.13%), Query Frame = 1
Query: 1 PDMLMTKDEETRESAAALESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKD----TYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
PDM+MT EE A AL+ A++ A GL P + LR +V + F+ FRR + GDPPA+V P+ V + A+ + R R + DK +WL L G+V+ N QA ++S +M PK+ TYR V D+RAVN I S PMP+LE + ++ A+ + +LD+LQGYW MPL P+AQEIFTM+ G+Y+P RVPQGVL ATSY+QGTM +L L C VWVDDI
Sbjct: 585 PDMVMTPAEEEAGRADALDRAVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDI 815
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 187 bits (476), Expect = 6.320e-51 Identity = 110/232 (47.41%), Postives = 142/232 (61.21%), Query Frame = 1
Query: 1 PDMLMTKDEETRESAAALESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALG-GDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
PDM M+ +EE +A+L+SA+ A GL V LR I++ ++AFRR L GDPPA+VEPLRV + AR + RPR + K WL G G+VF N QA ++S MA PKK YR+V+D+RA N + MPN E ++ A + +LDLLQ YWQ PL P+AQEIFT+ T G+YTP RVPQG+L ATSYFQ T+ +L GL C VWVDD+
Sbjct: 693 PDMDMSPEEEASARSASLDSAVSSAAAAGLEEPHVGRLRGIISE-RWNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWLAG-------LGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDV 913
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.870e-44 Identity = 99/232 (42.67%), Postives = 134/232 (57.76%), Query Frame = 1
Query: 1 PDMLMTKDEETRESAAALESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALG-GDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTYRMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
P M+ +EE +A+L+SA+ A GL V LR+I+ ++AFR + GDPPA+VEPLRV + A + RPR + K WL G G+VF N QA +S MA PKK YR+++D+RA NN + MPN E + +LDLL+ Y Q PL P+AQ+IFT+ T +G++TP RVPQG+L ATSYFQ T+ +L GL C VWVD +
Sbjct: 467 PHADMSPEEEASARSASLDSAVSSAVVAGLDEPHVGRLRSII-RERWNAFRPGMRPGDPPANVEPLRVTLKPGALPVKARPRTYNPIKTAWLAGCMASPVVLGLVFLNMQAVSASAAMATPKKGGYRLLSDFRAANNQVEKVPGVMPNPEASMAQFSATKFHGSLDLLRAYCQRPLSPEAQKIFTIATPRGLHTPKRVPQGILNATSYFQATLSRILEGLN---CLVWVDGV 694
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.300e-40 Identity = 88/221 (39.82%), Postives = 120/221 (54.30%), Query Frame = 1
Query: 52 LESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTY-------RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
L+S + AR +GL V LR I+ +FR G DPP V PL+V V NA+ + +PR S D +LD H KL + G+VF N ++R++S + KK+ RM D R VN PMP LE + + GA V ALD +GYWQ+PL +QE+FT +T +G+YTPTRVP G A +Y QG + ++ LLG W+DDI
Sbjct: 37 LDSKLAAARAKGLSAKGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDI 256
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.930e-39 Identity = 88/221 (39.82%), Postives = 121/221 (54.75%), Query Frame = 1
Query: 52 LESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTY-------RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
L+S + AR +GL V LR I+ +FR G DPP V PL+V V NA+ + +PR S + +LD H KL + G+V N ++R++S + KK+ RM D R VN PMP LE + + GA VF ALD +GYWQ+PL +QE+FT +T +G+YTPTRVP G A +Y QG + ++ LLG VW+DDI
Sbjct: 396 LDSKLAAARAKGLSAKGVKRLREILLRRQ-DSFRLEFGSDPPVKVAPLQVRVKVNAQPTKAQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDI 615
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6A3VFD8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFD8_9STRA) HSP 1 Score: 153 bits (386), Expect = 3.360e-39 Identity = 88/221 (39.82%), Postives = 120/221 (54.30%), Query Frame = 1
Query: 52 LESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTY-------RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
L+S + AR +GL V LR I+ +FR G DPP V PL+V V NA+ + +PR S D +LD H KL + G+VF N ++R++S + KK+ RM D R VN PMP LE + + GA VF ALD +GYWQ+PL +QE+FT +T +G+YTPTRVP G A +Y QG + ++ LG W+DDI
Sbjct: 439 LDSKLAAARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDI 658
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA) HSP 1 Score: 153 bits (386), Expect = 6.720e-39 Identity = 88/221 (39.82%), Postives = 120/221 (54.30%), Query Frame = 1
Query: 52 LESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTY-------RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
L+S + AR +GL V LR I+ +FR G DPP V PL+V V NA+ + +PR S D +LD H KL + G+VF N ++R++S + KK+ RM D R VN PMP LE + + GA VF ALD +GYWQ+PL +QE+FT +T +G+YTPTRVP G A +Y QG + ++ LG W+DDI
Sbjct: 304 LDSKLAAARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDI 523
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA) HSP 1 Score: 153 bits (386), Expect = 7.100e-39 Identity = 88/221 (39.82%), Postives = 120/221 (54.30%), Query Frame = 1
Query: 52 LESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTY-------RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
L+S + AR +GL V LR I+ +FR G DPP V PL+V V NA+ + +PR S D +LD H KL + G+VF N ++R++S + KK+ RM D R VN PMP LE + + GA VF ALD +GYWQ+PL +QE+FT +T +G+YTPTRVP G A +Y QG + ++ LG W+DDI
Sbjct: 439 LDSKLAAARAKGLSAMGVKRLREILLRRQ-DSFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDI 658
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.700e-38 Identity = 86/221 (38.91%), Postives = 120/221 (54.30%), Query Frame = 1
Query: 52 LESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTY-------RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
L+S + AR +GL V LR I+ +FR DPP V PL+V V NA+ + +PR S D +LD H KL + G+VF N ++R++S + KK+ RM D R VN P+P LE + + GA V A+D +GYWQ+PL +QE+FT +T +G+YTPTRVP G A +Y QG + ++ GLLG W+DDI
Sbjct: 475 LDSKLAAARAKGLSAMGVKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDI 694
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA) HSP 1 Score: 144 bits (363), Expect = 2.120e-38 Identity = 80/204 (39.22%), Postives = 111/204 (54.41%), Query Frame = 1
Query: 103 VTELRNIVTNSHFHAFRRALGGDPPADVEPLRVHVPANARAARERPRPMSRDKAEWLDGHFTKLAQAGMVFANPQARFSSVVMAMPKKDTY-------RMVADYRAVNNLIAPSAMPMPNLEEIGRGMAGASVFCALDLLQGYWQMPLDPQAQEIFTMVTAKGVYTPTRVPQGVLYATSYFQGTMGDVLAGLLGKICEVWVDDI 693
V LR I+ +FR DPP V PL+V V NA+ + +PR S D +LD H KL + G+VF N ++R++S + KK+ RM D R VN P+P LE + + GA V A+D +GYWQ+PL +QE+FT +T +G+YTPTRVP G A +Y QG + ++ GLLG W+DDI
Sbjct: 19 VKRLREILLRRQ-DSFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDI 221 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26355.7198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26355.7198.1 >prot_H-paniculata_contig26355.7198.1 ID=prot_H-paniculata_contig26355.7198.1|Name=mRNA_H-paniculata_contig26355.7198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp MLMTKDEETRESAAALESAIEEARTEGLPPNKVTELRNIVTNSHFHAFRRback to top mRNA from alignment at H-paniculata_contig26355:2191..2892+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26355.7198.1 ID=mRNA_H-paniculata_contig26355.7198.1|Name=mRNA_H-paniculata_contig26355.7198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=702bp|location=Sequence derived from alignment at H-paniculata_contig26355:2191..2892+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26355:2191..2892+ >mRNA_H-paniculata_contig26355.7198.1 ID=mRNA_H-paniculata_contig26355.7198.1|Name=mRNA_H-paniculata_contig26355.7198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig26355:2191..2892+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |