|
|
Homology
BLAST of mRNA_H-paniculata_contig26333.7193.1 vs. uniprot
Match: A0A6H5KGL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL2_9PHAE) HSP 1 Score: 195 bits (495), Expect = 4.180e-54 Identity = 97/126 (76.98%), Postives = 106/126 (84.13%), Query Frame = 1
Query: 7 AWRGSDDDGGSIPGRILFVSVGFYGHAMPLLALAEEVALRGHNVTFGTHNRLRSLVESTPGVEFLSAGRMPMHDYQLRGKFKSLSQTGGFWGLLTLLNDVYLPLSRPMYRALLAAVSLPPPSVPPT 384
AWR DG +PGRILFVSVGFYGHAMPLL+LAEE+A RGHNVTF THN LR +V+ TPGV FLSAGRMPMHD+ LR K +SLSQ GGFWGLLTLLNDVYLPL+RPMYRALL+AV LPP PPT
Sbjct: 55 AWR----DGRPVPGRILFVSVGFYGHAMPLLSLAEEIAARGHNVTFATHNCLRPMVDETPGVAFLSAGRMPMHDHHLRSKLRSLSQAGGFWGLLTLLNDVYLPLARPMYRALLSAVQLPPS--PPT 174
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 87.0 |
| Seed ortholog evalue | 1.1e-14 |
| Seed eggNOG ortholog | 42099.EPrPV00000022270 |
| KEGG rclass | RC00005,RC00033,RC00049,RC00059,RC00078,RC00171,RC00397,RC00523,RC00529,RC00708,RC02748 |
| KEGG ko | ko:K00699 |
| KEGG Reaction | R01383,R02358,R02389,R02478,R02502,R02902,R03091,R04352,R04353,R04354,R04683,R07106,R08259,R08261,R08262,R08263,R08615,R09426,R09427,R09428 |
| KEGG Pathway | ko00040,ko00053,ko00140,ko00830,ko00860,ko00980,ko00982,ko00983,ko01100,ko01110,ko05204,map00040,map00053,map00140,map00830,map00860,map00980,map00982,map00983,map01100,map01110,map05204 |
| KEGG Module | M00014,M00129 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | transferase activity, transferring hexosyl groups |
| EggNOG OGs | 1ME64@121069,KOG1192@1,KOG1192@2759 |
| Ec32 ortholog description | Glycosyltransferase family 28 |
| Ec32 ortholog | Ec-04_004610.1 |
| EC | 2.4.1.17 |
| COG Functional cat. | CG |
| CAZy | GT1 |
| Best tax level | Pythiales |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01003 |
| Exons | 3 |
| Model size | 602 |
| Cds size | 600 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26333.7193.1 >prot_H-paniculata_contig26333.7193.1 ID=prot_H-paniculata_contig26333.7193.1|Name=mRNA_H-paniculata_contig26333.7193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
SNAWRGSDDDGGSIPGRILFVSVGFYGHAMPLLALAEEVALRGHNVTFGT
HNRLRSLVESTPGVEFLSAGRMPMHDYQLRGKFKSLSQTGGFWGLLTLLN
DVYLPLSRPMYRALLAAVSLPPPSVPPTPAPVPPHSTRSQASSSSGGGGS
GDGEERGDSGGVNKEERAFQFAYSNVGNGGGRGGSSDGSGERGPRHAQGG back to topmRNA from alignment at H-paniculata_contig26333:153..2266- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig26333.7193.1 ID=mRNA_H-paniculata_contig26333.7193.1|Name=mRNA_H-paniculata_contig26333.7193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2114bp|location=Sequence derived from alignment at H-paniculata_contig26333:153..2266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAACGCTTGGCGAGGAAGCGATGACGACGGTGGGAGTATTCCCGGAAG
GATACTTTTCGTCTCGGTCGGCTTCTACGGACATGCAATGCCGCTGCTTG
CCTTGGCCGAAGAAGTTGCCTTGAGGTCAGTAAGCACTTTCTCCTTTCCT
AGTTAATAGTGAGCAGCAGTATAGCAATTCACGGTCAGTGTGACGTTTAA
GGTCTCATGGTACAGCAGATGGGTACCCCAACTTAAGGCGAAACCATCGT
TAAGGCGGGTCAAATCGACCTTGTTACCAAAACAGCATTCACTACATTCC
TATATACCACAAGGTCATTTTTAGTAAGGCGGTTTTAGATTTTAAAGTGG
GCATTGTGGCGTGTCACATCCATCACCATCACCACCCCGCTTTCAAATCA
GGGTACCCACGGTTACCATGCTTTTTTAGTTCGTGTTTTTTCAGTTTTTC
TGGGTTTTTTGGTTTTTTTGAGACACAAGATTGAAAAGACTCACAAAAAA
GTGATAGTAATATTTACTACTATAATGGGGGAGACTCGTACGCTTTTTTC
ACGATACCCATTCGGTCTCCCTCCCCCCCAATTGCTCCCCCTCCCGCACG
GTGCATGCAAACGTCCATGTCTCACGTGCTGCTTTGTTCGGGCGATTGCT
CGCGCGCGCGATTGAATTGGCAGGGGTCACAACGTAACCTTTGGCACTCA
CAACCGTCTGCGGTCGTTGGTGGAATCAACTCCTGGGGTCGAGTTTCTGT
CTGCGGGCCGGATGCCGATGCATGACTACCAGCTCAGGGGCAAGGTGGGT
TATTTTTATTTTATTTTTTTGTATTTTTATTTTTATTTTTATTTTTGTAT
TTTATTTTTATTTTTATTTTTGTATTTTTAAAATATTATTATTCCTATTT
TTTTTGTGTTTCAATATATATATATATATGGGGGGTGTTTCGCCCTGCTT
TCGTTTTTGTTGAGTGATAATTGCTGCTCTCTGGTGTAGTCGCTCACTGT
TTTTTCTTACGTGACTGGTTGCGCCCTCTCTGCTGTTTAATGTACTTGTA
ATGCTAGACCTGCCGATTGACCCAGGTTCCGTCTTCGTTTTTTTTTATCC
TTGTTTCGGGCGAGGGGGGGGGGCATCCTGCGTGCACTTACCAGCAAGGT
ACTACTAGTATCAATACAAAGGACATGCATCCTAAGCGAGTGTTTGGTTG
TGCGGTATCTACTTCGAAGTATTACATGTAGAGAAGGAAGCGTTGGCAGA
CACGGCGTCGATCACACTGTAGCATCTCGTACATCTTGCGTGTATCCCGC
TGTTCCCCCACATGACCCAGAAGCTGTTGCCCCGGAGCTCCGTACGACCT
CTGTTGGTTATATTACGTAGGTACAAGTGCAGATTGAAGTCAGCTGTTTA
ACTTCAACATGGGTAAAATATAGTTAATATGAGGTTCATCTCATCCCCCT
CCGATCCCCAGAATTTTGAATTGGGAAGTGGAGAAAGCGGGGACGGAAAA
ACGGGAGGTTCATTGAATTTGAATAGTTATCAATGTGCATGATGCACACG
TCACGCTGAGTTTAATGTAGCTTAGCACTGCATTGTATTTTTTTTAAAAC
ATAACACCATGTGGGGGAGAAAGCTTTGCTCGTGTAAAACGTACGCGTGG
TACGAAGTATTTATTGCTCGCCTCAGCAAAGTACGACACACCACTCACTC
ACCCACCTCTCCCCCTTTCATCCCTTCCTGCCGCACAACACGACGCACGC
CCCGACAGTTCAAGTCGCTGTCCCAAACCGGAGGGTTCTGGGGTCTGCTC
ACTCTCCTGAATGACGTCTACTTGCCCCTGTCCCGGCCGATGTACCGAGC
GCTGCTAGCCGCCGTTTCCCTGCCCCCGCCGTCGGTTCCGCCGACACCCG
CGCCGGTACCTCCACATTCCACTCGGTCACAAGCATCGAGTAGTAGCGGC
GGCGGCGGCAGCGGCGACGGCGAGGAGAGGGGTGATAGCGGAGGGGTGAA
CAAAGAGGAACGAGCGTTTCAGTTTGCATACTCAAACGTGGGAAATGGTG
GTGGTCGTGGTGGTAGCAGTGATGGCAGTGGCGAAAGGGGGCCGCGACAT
GCTCAGGGAGGGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig26333:153..2266- >mRNA_H-paniculata_contig26333.7193.1 ID=mRNA_H-paniculata_contig26333.7193.1|Name=mRNA_H-paniculata_contig26333.7193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig26333:153..2266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAACGCTTGGCGAGGAAGCGATGACGACGGTGGGAGTATTCCCGGAAG
GATACTTTTCGTCTCGGTCGGCTTCTACGGACATGCAATGCCGCTGCTTG
CCTTGGCCGAAGAAGTTGCCTTGAGAGTAACGCTTGGCGAGGAAGCGATG
ACGACGGTGGGAGTATTCCCGGAAGGATACTTTTCGTCTCGGTCGGCTTC
TACGGACATGCAATGCCGCTGCTTGCCTTGGCCGAAGAAGTTGCCTTGAG
GGGTCACAACGTAACCTTTGGCACTCACAACCGTCTGCGGTCGTTGGTGG
AATCAACTCCTGGGGTCGAGTTTCTGTCTGCGGGCCGGATGCCGATGCAT
GACTACCAGCTCAGGGGCAAGGGGTCACAACGTAACCTTTGGCACTCACA
ACCGTCTGCGGTCGTTGGTGGAATCAACTCCTGGGGTCGAGTTTCTGTCT
GCGGGCCGGATGCCGATGCATGACTACCAGCTCAGGGGCAAGTTCAAGTC
GCTGTCCCAAACCGGAGGGTTCTGGGGTCTGCTCACTCTCCTGAATGACG
TCTACTTGCCCCTGTCCCGGCCGATGTACCGAGCGCTGCTAGCCGCCGTT
TCCCTGCCCCCGCCGTCGGTTCCGCCGACACCCGCGCCGGTACCTCCACA
TTCCACTCGGTCACAAGCATCGAGTAGTAGCGGCGGCGGCGGCAGCGGCG
ACGGCGAGGAGAGGGGTGATAGCGGAGGGGTGAACAAAGAGGAACGAGCG
TTTCAGTTTGCATACTCAAACGTGGGAAATGGTGGTGGTCGTGGTGGTAG
CAGTGATGGCAGTGGCGAAAGGGGGCCGCGACATGCTCAGGGAGGGTTCA
AGTCGCTGTCCCAAACCGGAGGGTTCTGGGGTCTGCTCACTCTCCTGAAT
GACGTCTACTTGCCCCTGTCCCGGCCGATGTACCGAGCGCTGCTAGCCGC
CGTTTCCCTGCCCCCGCCGTCGGTTCCGCCGACACCCGCGCCGGTACCTC
CACATTCCACTCGGTCACAAGCATCGAGTAGTAGCGGCGGCGGCGGCAGC
GGCGACGGCGAGGAGAGGGGTGATAGCGGAGGGGTGAACAAAGAGGAACG
AGCGTTTCAGTTTGCATACTCAAACGTGGGAAATGGTGGTGGTCGTGGTG
GTAGCAGTGATGGCAGTGGCGAAAGGGGGCCGCGACATGCTCAGGGAGGG back to top
|