mRNA_H-paniculata_contig26323.7190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26323.7190.1
Unique NamemRNA_H-paniculata_contig26323.7190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A836CIQ1_9STRA (4-aminobutyrate aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIQ1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.060e-38
Identity = 84/152 (55.26%), Postives = 102/152 (67.11%), Query Frame = 1
Query:   28 APLPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFEAPQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEVCG 483
            A L   QPA SMGGTY  N +SCA+A ATL V++EEGL+ NA+ RG QL  GL  ++       K      G+    +D+RG GLMVGLE  A  GSG AT ++KACL+RGMILLT ST+ETVRFIP LN+S  EM EGL IF +A+ EV G
Sbjct:  316 AELSATQPAGSMGGTYAGNIISCAAACATLDVIQEEGLVANAKARGDQLSSGLKDIA------AKLQSLNGGKAI-VRDVRGPGLMVGLELTAAPGSGAATRLSKACLKRGMILLTTSTFETVRFIPALNISAKEMDEGLGIFSDAMHEVFG 460          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A484E2I7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E2I7_BRELC)

HSP 1 Score: 131 bits (329), Expect = 2.490e-33
Identity = 75/149 (50.34%), Postives = 94/149 (63.09%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFEAPQGS-GVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEV 477
            L + QP  SMGGTY  N VSCA+AIATL V+ EE LL N + RGKQL  GL K+   G             ++P  D+RG GLM+GLEF+  + S G AT ++ ACL  GM+LLT S YET+RFIPPL VSE E    L  F++A+ +V
Sbjct:  282 LTDTQPPGSMGGTYAGNTVSCAAAIATLEVIAEENLLENTRARGKQLQAGLHKLKASG-------------KYPILDVRGLGLMIGLEFDPAKASKGTATKISAACLNHGMMLLTTSIYETLRFIPPLTVSEDECSLALATFEKALNDV 417          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A1W0A2U5_9STRA (4-aminobutyrate aminotransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2U5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.040e-32
Identity = 72/147 (48.98%), Postives = 91/147 (61.90%), Query Frame = 1
Query:   46 QPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFEAPQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEVCGE 486
            QPA SMGGTY  NAV+ A+A A L V +EE +L N + RG+QLM GL                 L  ++P  D+RG GLMV LEF++    G +  V   C+ +GM+LL+ S YET+RFIPPLNVS  EMQEGL I   A+A+V GE
Sbjct:  286 QPAGSMGGTYAGNAVAMAAASAVLDVFQEESILANTRARGEQLMTGL---------------NNLKNKYPILDVRGAGLMVALEFDSTVAPGTSGKVCATCVDKGMLLLSTSVYETLRFIPPLNVSAEEMQEGLDILDAALADVFGE 417          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A0P1AB24_PLAHL (4-aminobutyrate transaminase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AB24_PLAHL)

HSP 1 Score: 128 bits (322), Expect = 2.660e-32
Identity = 73/149 (48.99%), Postives = 98/149 (65.77%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFE-APQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEV 477
            L +LQP  SMGGTY  NAV+CA+AIAT +V+ +E LL N   RG QL  GL ++   G             ++P  D+RG GLM+GLEF+ + +  G A+ V+ ACL RGM+LLT S YET+RF+PPLNVSE E    L+IF++A+ +V
Sbjct:  282 LTDLQPPGSMGGTYAGNAVACAAAIATQQVIADEKLLENTHVRGAQLQTGLKQLKASG-------------KYPILDVRGLGLMIGLEFDPSSRIKGAASKVSAACLNRGMMLLTTSVYETLRFMPPLNVSEDECNLALEIFEKALNDV 417          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A7S3WLW3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WLW3_EMIHU)

HSP 1 Score: 122 bits (307), Expect = 8.800e-32
Identity = 71/148 (47.97%), Postives = 91/148 (61.49%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFEAPQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEV 477
            L + QP  SMGGTY  NAVSCA+A+AT RV++EEGL+ NA  +G +L   L         GE    R  G     +D+RG G M+GLE  A Q +G A  V +AC  RG++LL CS YET+RFIPPL V+  E+ E   +F  A+AEV
Sbjct:   89 LTDAQPPGSMGGTYAGNAVSCAAAVATQRVIREEGLVENAAAQGARLRAAL---------GEVAARRGEG---VVRDVRGHGCMLGLELAASQPAGTAKRVAQACAARGLLLLNCSVYETLRFIPPLTVAPAEVDEACDVFDAALAEV 224          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: W4H0V2_9STRA (4-aminobutyrate transaminase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H0V2_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.050e-31
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFEAPQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEV 477
            L +LQP  SMGGTY  NAVSCA+A+ATL   +EE  L+NA  RG QL+ GL K+            ++L   FP  D+RG GLMV +EF+     G  + + +AC+  GM+LL  S +ETVRFIPPLNVSE E+  G+ IF +A+++V
Sbjct:  284 LTDLQPPGSMGGTYAGNAVSCAAALATLDAFEEENTLINASVRGAQLVAGLTKL------------QDL---FPILDVRGVGLMVAVEFDKSVPPGTVSRICQACVEYGMLLLPTSVFETVRFIPPLNVSEGEIDLGIAIFAKAMSQV 416          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A6G0X0A5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0A5_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.410e-31
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFEAPQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEVCG 483
            L + QP  SMGGTY  NAV+CA+A+ATL V +EE +L N + RG QL+ GL K+                 ++P  D+RG GL+V +EF+       A+ + +AC+ RGM+LLT S +ET+RFIPPLN S  E+  G+ IF +AV +V G
Sbjct:  282 LTDKQPPGSMGGTYAGNAVACAAAMATLEVFEEEKILENTRLRGAQLVSGLAKLK---------------EKYPILDVRGTGLLVAVEFDKTVPKDTASRIAQACVNRGMLLLTTSVFETLRFIPPLNSSADEIDLGVSIFSQAVEDVLG 416          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A662WC34_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A662WC34_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.820e-31
Identity = 72/149 (48.32%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFE-APQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAVAEV 477
            L +LQPA SMGGTY  NAV+CA+AIAT  V+ EE +L N + RG QL  GL K+   G             ++P  D+RG GLM+GLEF+ A    G A  V  ACL  GM+LLT S YET+RF+P L VSE E    L+IF++A+ ++
Sbjct:  282 LTDLQPAGSMGGTYAGNAVACAAAIATQEVIAEENVLENTRARGAQLQAGLAKLKASG-------------KYPIMDVRGLGLMIGLEFDPAHTPKGTANKVATACLDHGMMLLTTSIYETLRFMPALTVSEDECSLALEIFEKALDDI 417          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: F0WIK1_9STRA (Uncharacterized protein ALNC14_072280 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIK1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 7.750e-31
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFEAPQGS-GVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAV 468
            L ++Q   SMGGTY  NAVSCA+AIAT  VMK + +L NA+ RG QLM GL K+ + G             ++P KD+RG GLMV +EF+    + G A+ V++ACL+ G++LLT S YET+RF+PPL +S  E Q GL+ F++A+
Sbjct:  341 LTDMQHPGSMGGTYAGNAVSCAAAIATQSVMKRDNVLANARERGLQLMTGLRKLQYCG-------------KYPIKDVRGLGLMVAVEFDDTIAAPGTASRVSQACLKNGLLLLTTSIYETLRFMPPLTLSADECQLGLKKFEDAL 473          
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Match: A0A8K1FHT3_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHT3_PYTOL)

HSP 1 Score: 122 bits (305), Expect = 7.590e-30
Identity = 68/148 (45.95%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   34 LPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLNAQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEFE---APQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQIFKEAV 468
            L + QP  S+GGTY  NAVSCA+A+ATL V++EE +L N  +RG + M GL K+   G             R+P +D+RG GLMV LEF+   AP G+  A  V++ACL+ GM++LT ST+ET+RF+PPL +S  E + GL++ + A+
Sbjct:  282 LSDSQPPGSVGGTYAGNAVSCAAALATLDVIEEENVLANVNKRGAEFMAGLQKLKASG-------------RYPIQDVRGLGLMVALEFDLKLAPVGT--AARVSEACLKHGMMVLTTSTFETLRFMPPLTISADETRLGLELLERAL 414          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26323.7190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIQ1_9STRA2.060e-3855.264-aminobutyrate aminotransferase n=1 Tax=Tribonema... [more]
A0A484E2I7_BRELC2.490e-3350.34Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A1W0A2U5_9STRA1.040e-3248.984-aminobutyrate aminotransferase n=1 Tax=Thraustot... [more]
A0A0P1AB24_PLAHL2.660e-3248.994-aminobutyrate transaminase n=1 Tax=Plasmopara ha... [more]
A0A7S3WLW3_EMIHU8.800e-3247.97Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
W4H0V2_9STRA1.050e-3147.974-aminobutyrate transaminase n=3 Tax=Aphanomyces a... [more]
A0A6G0X0A5_9STRA1.410e-3144.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662WC34_9STRA3.820e-3148.32Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
F0WIK1_9STRA7.750e-3147.95Uncharacterized protein ALNC14_072280 n=1 Tax=Albu... [more]
A0A8K1FHT3_PYTOL7.590e-3045.95Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26323contigH-paniculata_contig26323:650..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue2.2e-26
Seed eggNOG ortholog653948.CCA21085
KEGG rclassRC00006,RC00062
KEGG koko:K00823
KEGG ReactionR00908,R01648
KEGG Pathwayko00250,ko00410,ko00640,ko00650,ko01100,ko01120,map00250,map00410,map00640,map00650,map01100,map01120
KEGG ModuleM00027
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EggNOG OGsCOG4992@1,KOG1401@2759
EC2.6.1.19
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Exons1
Model size501
Cds size501
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.0314167-CDS-H-paniculata_contig26323:649..11501622929788.0314167-CDS-H-paniculata_contig26323:649..1150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26323 650..1150 +
1691481010.8335388-CDS-H-paniculata_contig26323:649..11501691481010.8335388-CDS-H-paniculata_contig26323:649..1150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26323 650..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26323.7190.1prot_H-paniculata_contig26323.7190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26323 650..1150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26323.7190.1

>prot_H-paniculata_contig26323.7190.1 ID=prot_H-paniculata_contig26323.7190.1|Name=mRNA_H-paniculata_contig26323.7190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MPPFCGPSFAPLPNLQPAASMGGTYVANAVSCASAIATLRVMKEEGLLLN
AQRRGKQLMDGLVKMSWGGAGGEKGNDRELGRRFPFKDLRGQGLMVGLEF
EAPQGSGVATAVTKACLRRGMILLTCSTYETVRFIPPLNVSETEMQEGLQ
IFKEAVAEVCGEYNSS*
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mRNA from alignment at H-paniculata_contig26323:650..1150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26323.7190.1 ID=mRNA_H-paniculata_contig26323.7190.1|Name=mRNA_H-paniculata_contig26323.7190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig26323:650..1150+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCCTTTTTGTGGCCCTTCCTTTGCCCCCCTTCCCAATTTGCAGCC AGCTGCTTCGATGGGCGGTACGTATGTGGCCAACGCCGTCTCCTGCGCCT CCGCGATCGCCACCCTCCGAGTCATGAAAGAGGAGGGCCTGCTCCTGAAC GCACAGCGCCGTGGCAAGCAGCTCATGGACGGCCTCGTGAAGATGAGCTG GGGCGGAGCCGGCGGAGAAAAAGGAAACGACAGGGAGCTGGGGCGGCGGT TTCCTTTTAAGGACCTCCGCGGGCAGGGGCTGATGGTGGGGTTGGAGTTC GAGGCACCTCAAGGGTCGGGCGTCGCTACGGCGGTAACCAAGGCTTGCCT CAGGAGGGGCATGATCTTGCTCACATGTTCCACGTATGAGACGGTTAGGT TCATCCCGCCTCTAAACGTCAGCGAGACAGAGATGCAGGAAGGCCTCCAG ATCTTCAAAGAGGCAGTTGCTGAGGTTTGCGGCGAATATAATTCTTCTTG A
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Coding sequence (CDS) from alignment at H-paniculata_contig26323:650..1150+

>mRNA_H-paniculata_contig26323.7190.1 ID=mRNA_H-paniculata_contig26323.7190.1|Name=mRNA_H-paniculata_contig26323.7190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig26323:650..1150+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTCCTTTTTGTGGCCCTTCCTTTGCCCCCCTTCCCAATTTGCAGCC
AGCTGCTTCGATGGGCGGTACGTATGTGGCCAACGCCGTCTCCTGCGCCT
CCGCGATCGCCACCCTCCGAGTCATGAAAGAGGAGGGCCTGCTCCTGAAC
GCACAGCGCCGTGGCAAGCAGCTCATGGACGGCCTCGTGAAGATGAGCTG
GGGCGGAGCCGGCGGAGAAAAAGGAAACGACAGGGAGCTGGGGCGGCGGT
TTCCTTTTAAGGACCTCCGCGGGCAGGGGCTGATGGTGGGGTTGGAGTTC
GAGGCACCTCAAGGGTCGGGCGTCGCTACGGCGGTAACCAAGGCTTGCCT
CAGGAGGGGCATGATCTTGCTCACATGTTCCACGTATGAGACGGTTAGGT
TCATCCCGCCTCTAAACGTCAGCGAGACAGAGATGCAGGAAGGCCTCCAG
ATCTTCAAAGAGGCAGTTGCTGAGGTTTGCGGCGAATATAATTCTTCTTG
AATGCCTCCTTTTTGTGGCCCTTCCTTTGCCCCCCTTCCCAATTTGCAGC
CAGCTGCTTCGATGGGCGGTACGTATGTGGCCAACGCCGTCTCCTGCGCC
TCCGCGATCGCCACCCTCCGAGTCATGAAAGAGGAGGGCCTGCTCCTGAA
CGCACAGCGCCGTGGCAAGCAGCTCATGGACGGCCTCGTGAAGATGAGCT
GGGGCGGAGCCGGCGGAGAAAAAGGAAACGACAGGGAGCTGGGGCGGCGG
TTTCCTTTTAAGGACCTCCGCGGGCAGGGGCTGATGGTGGGGTTGGAGTT
CGAGGCACCTCAAGGGTCGGGCGTCGCTACGGCGGTAACCAAGGCTTGCC
TCAGGAGGGGCATGATCTTGCTCACATGTTCCACGTATGAGACGGTTAGG
TTCATCCCGCCTCTAAACGTCAGCGAGACAGAGATGCAGGAAGGCCTCCA
GATCTTCAAAGAGGCAGTTGCTGAGGTTTGCGGCGAATATAATTCTTCTT
GA
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