mRNA_H-paniculata_contig26249.7169.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26249.7169.1
Unique NamemRNA_H-paniculata_contig26249.7169.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A0A7S3MSA0_9CILI (Hypothetical protein (Fragment) n=1 Tax=Anophryoides haemophila TaxID=46462 RepID=A0A7S3MSA0_9CILI)

HSP 1 Score: 64.7 bits (156), Expect = 9.570e-12
Identity = 34/68 (50.00%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   22 LPYQHRAGVSPYTSSYELAEACVFNKQ-LPSQFCAK----SSSLRYIFVPHLPNVTGLICRVPSTEFS 210
            L +QHRAGVSPYTSSY+ A  CVF KQ  P   CA     ++ +     P  P VTG  CRVPS  F+
Sbjct:   10 LTFQHRAGVSPYTSSYDFARTCVFGKQSFPPGLCAPHRHHTARVHDSSGPPYPKVTGAFCRVPSPRFT 77          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A0A1Y1JUJ1_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1JUJ1_PHOPY)

HSP 1 Score: 64.3 bits (155), Expect = 1.550e-11
Identity = 34/75 (45.33%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    1 LMQKHQSLPYQHRAGVSPYTSSYELAEACVFNKQLP-----SQFCAKSSSLRYIFVPHLPNVTGLICRVPSTEFS 210
            L + H  L +QHRAG++PYTS++  AE CVFNKQL       +F  +  +L        P VT L C VPS EFS
Sbjct:   13 LFRLHHQLTFQHRAGITPYTSTFVFAECCVFNKQLQPAGIFDRFNLQGQALTIYAGAPSPEVTVLFCLVPSPEFS 87          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A0A0N4VQR9_ENTVE (Uncharacterized protein n=2 Tax=Ecdysozoa TaxID=1206794 RepID=A0A0N4VQR9_ENTVE)

HSP 1 Score: 64.7 bits (156), Expect = 1.960e-11
Identity = 34/68 (50.00%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   22 LPYQHRAGVSPYTSSYELAEACVFNKQ-LPSQFCAK----SSSLRYIFVPHLPNVTGLICRVPSTEFS 210
            L +QHRAGVSPYTSSY+ A  CVF KQ  P   CA     ++ +     P  P VTG  CRVPS  F+
Sbjct:   24 LTFQHRAGVSPYTSSYDFARTCVFGKQSFPPGLCAPHRHHTARVHDSSGPPYPKVTGAFCRVPSPRFT 91          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A0A0P6BEK3_9CRUS (Uncharacterized protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6BEK3_9CRUS)

HSP 1 Score: 59.3 bits (142), Expect = 1.870e-9
Identity = 31/56 (55.36%), Postives = 33/56 (58.93%), Query Frame = 1
Query:   28 YQHRAGVSPYTSSYELAEACVFNKQLPSQFCAKSSSLRYIFVPHLPNVTGLICRVP 195
            +QHRAGVSPYTS +  AE CVF KQ P      SS       P  P VTGL CRVP
Sbjct:   85 FQHRAGVSPYTSPFGFAETCVFGKQSPGPLHCGSSPFIERSTPS-PEVTGLCCRVP 139          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A0A0J8BG93_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BG93_BETVV)

HSP 1 Score: 58.5 bits (140), Expect = 2.520e-9
Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 1
Query:   22 LPYQHRAGVSPYTSSYELAEACVFNKQLPSQFCAKSSSLRYIFVPHLPNVTGLICRVPS 198
            L ++HRAGV PYTSSY+ AE CVF KQLP               P  P VT + CRVPS
Sbjct:   61 LTFRHRAGVRPYTSSYDFAEPCVFVKQLPPPGLCPQCLACVSTGPPYPEVTEVNCRVPS 119          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: C9YEE8_CURXX (Uncharacterized protein n=1 Tax=Curvibacter symbiont subsp. Hydra magnipapillata TaxID=667019 RepID=C9YEE8_CURXX)

HSP 1 Score: 54.3 bits (129), Expect = 2.180e-7
Identity = 34/68 (50.00%), Postives = 38/68 (55.88%), Query Frame = 1
Query:   22 LPYQHRAGVSPYTSSYELAEACVFNKQL-PSQFCAKSSSLRYIFVPHL----PNVTGLICRVPSTEFS 210
            L +QHRAGV+PYTS++  AE CVFNKQ  P  FC           P        VT  ICRVPS EFS
Sbjct:   86 LIFQHRAGVTPYTSTFVFAECCVFNKQSQPPIFCNLIGLHPRGTSPTKGTPSSEVTVSICRVPSPEFS 153          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A7VSA7_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] leptum DSM 753 TaxID=428125 RepID=A7VSA7_9FIRM)

HSP 1 Score: 52.8 bits (125), Expect = 6.410e-7
Identity = 31/65 (47.69%), Postives = 36/65 (55.38%), Query Frame = 1
Query:    4 MQKHQSLPYQHRAGVSPYTSSYELAEACVFNKQLPSQFCAKSSSLRYIFVPHLPNVTGLICRVPS 198
            M  H  L +QHRAGVSPYTSS++LAE CVF KQ P      S S   +F P L +        PS
Sbjct:   40 MLAHLLLTFQHRAGVSPYTSSFDLAETCVFAKQSPGPIHCGSISGASLF-PKLRDQFAEFLNYPS 103          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: E0XY91_9SPIR (Uncharacterized protein n=1 Tax=uncultured Spirochaetales bacterium HF0500_06B09 TaxID=710994 RepID=E0XY91_9SPIR)

HSP 1 Score: 52.4 bits (124), Expect = 1.260e-6
Identity = 24/37 (64.86%), Postives = 25/37 (67.57%), Query Frame = 1
Query:   22 LPYQHRAGVSPYTSSYELAEACVFNKQLPSQFCAKSS 132
            L +QHRAGVSPYTS Y LAE CVF KQ P  F    S
Sbjct:   46 LTFQHRAGVSPYTSRYRLAETCVFGKQSPGPFLCNLS 82          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A0A1V5J5Q1_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium ADurb.BinA012 TaxID=1852815 RepID=A0A1V5J5Q1_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 4.890e-6
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1
Query:   22 LPYQHRAGVSPYTSSYELAEACVFNKQLPSQFCAKSSSLRYIFVPHLPNVTG 177
            L +QHRAGVSPYTSS++LAE CVF KQ    F     S+     P LP + G
Sbjct:   80 LTFQHRAGVSPYTSSFDLAETCVFAKQSLGPFLCGHLSV----APLLPKLRG 127          
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Match: A0A078KVC2_9FIRM (Uncharacterized protein n=1 Tax=[Clostridium] cellulosi TaxID=29343 RepID=A0A078KVC2_9FIRM)

HSP 1 Score: 50.1 bits (118), Expect = 9.340e-6
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = 1
Query:   22 LPYQHRAGVSPYTSSYELAEACVFNKQLPSQFCAKSSSLRYIFVPHLPNVTGLICRVPST 201
            L ++HRAGVSPYTSS++LAE CVF KQ P      S        P  P   G    +PS+
Sbjct:   46 LTFRHRAGVSPYTSSFDLAETCVFAKQSPGPILCGSG------FPEHPFSLGYGVNLPSS 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26249.7169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7S3MSA0_9CILI9.570e-1250.00Hypothetical protein (Fragment) n=1 Tax=Anophryoid... [more]
A0A1Y1JUJ1_PHOPY1.550e-1145.33Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A0N4VQR9_ENTVE1.960e-1150.00Uncharacterized protein n=2 Tax=Ecdysozoa TaxID=12... [more]
A0A0P6BEK3_9CRUS1.870e-955.36Uncharacterized protein n=1 Tax=Daphnia magna TaxI... [more]
A0A0J8BG93_BETVV2.520e-950.85Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
C9YEE8_CURXX2.180e-750.00Uncharacterized protein n=1 Tax=Curvibacter symbio... [more]
A7VSA7_9FIRM6.410e-747.69Uncharacterized protein n=1 Tax=[Clostridium] lept... [more]
E0XY91_9SPIR1.260e-664.86Uncharacterized protein n=1 Tax=uncultured Spiroch... [more]
A0A1V5J5Q1_9BACT4.890e-651.92Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A078KVC2_9FIRM9.340e-645.00Uncharacterized protein n=1 Tax=[Clostridium] cell... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26249contigH-paniculata_contig26249:584..796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.195769-CDS-H-paniculata_contig26249:583..7931622929784.195769-CDS-H-paniculata_contig26249:583..793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26249 584..793 -
1691481009.0714664-CDS-H-paniculata_contig26249:583..7931691481009.0714664-CDS-H-paniculata_contig26249:583..793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26249 584..793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929784.212658-UTR-H-paniculata_contig26249:793..7961622929784.212658-UTR-H-paniculata_contig26249:793..796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26249 794..796 -
1691481009.079493-UTR-H-paniculata_contig26249:793..7961691481009.079493-UTR-H-paniculata_contig26249:793..796Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26249 794..796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26249.7169.1prot_H-paniculata_contig26249.7169.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26249 584..793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26249.7169.1

>prot_H-paniculata_contig26249.7169.1 ID=prot_H-paniculata_contig26249.7169.1|Name=mRNA_H-paniculata_contig26249.7169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MQKHQSLPYQHRAGVSPYTSSYELAEACVFNKQLPSQFCAKSSSLRYIFV
PHLPNVTGLICRVPSTEFS*
back to top

mRNA from alignment at H-paniculata_contig26249:584..796-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26249.7169.1 ID=mRNA_H-paniculata_contig26249.7169.1|Name=mRNA_H-paniculata_contig26249.7169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig26249:584..796- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAATGCAAAAACATCAAAGCTTACCCTACCAGCACCGGGCAGGTGTCAG CCCATATACATCCTCTTACGAGTTAGCAGAGGCCTGTGTTTTTAATAAAC AGTTGCCTTCTCAATTTTGTGCCAAAAGTAGTAGCTTGCGCTACATATTT GTACCCCATCTCCCGAATGTTACGGGTCTAATTTGCCGAGTTCCTTCAAC AGAGTTCTCTTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26249:584..796-

>mRNA_H-paniculata_contig26249.7169.1 ID=mRNA_H-paniculata_contig26249.7169.1|Name=mRNA_H-paniculata_contig26249.7169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig26249:584..796- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAAACATCAAAGCTTACCCTACCAGCACCGGGCAGGTGTCAGCCC
ATATACATCCTCTTACGAGTTAGCAGAGGCCTGTGTTTTTAATAAACAGT
TGCCTTCTCAATTTTGTGCCAAAAGTAGTAGCTTGCGCTACATATTTGTA
CCCCATCTCCCGAATGTTACGGGTCTAATTTGCCGAGTTCCTTCAACAGA
GTTCTCTTAAATGCAAAAACATCAAAGCTTACCCTACCAGCACCGGGCAG
GTGTCAGCCCATATACATCCTCTTACGAGTTAGCAGAGGCCTGTGTTTTT
AATAAACAGTTGCCTTCTCAATTTTGTGCCAAAAGTAGTAGCTTGCGCTA
CATATTTGTACCCCATCTCCCGAATGTTACGGGTCTAATTTGCCGAGTTC
CTTCAACAGAGTTCTCTTAA
back to top