mRNA_H-paniculata_contig26207.7162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26207.7162.1
Unique NamemRNA_H-paniculata_contig26207.7162.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.480e-33
Identity = 78/224 (34.82%), Postives = 121/224 (54.02%), Query Frame = 3
Query:  945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPDFPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLINTKCTQSHG 1613
            Q   D+   P  +++   S     W  A + EI G    G  T+V E P+ +  + +   +  K +E G +  FK R+VA G  QI GI F  +SS  P A SIK ++++A  +  +L H D +QAY+   +++EI++   E H       G+  ++++A+YGL Q+GR W  +    L   G+EQ   D CVF K+VDGEVV +I+IYVDD+L+     +  G
Sbjct:   93 QKPSDVEAVPMTYKDVMCSKCMVFWVAAMKKEIDGRDKTGTFTKVMELPEGRKAIGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGH---GSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREG 313          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 7.780e-31
Identity = 76/219 (34.70%), Postives = 123/219 (56.16%), Query Frame = 3
Query:  945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
            Q   D+   P  +++   S     W+ A + EI G    G  T+V E P+ +  + ++  +  K +E G +  FK R+VA G  QI GI F  +SS  P+A SIK ++++A  +  +L H D +QAY+   + +EI++       ++P+      G+  ++++A+YGL Q+GR W  +    L   G+EQ   D CVF K+VDGEVV +I+IYVDD+L+
Sbjct:  449 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV 660          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.730e-30
Identity = 76/219 (34.70%), Postives = 122/219 (55.71%), Query Frame = 3
Query:  945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
            Q   D+   P  +++   S     W+ A + EI G    G  T+V E P+ +  + ++  +  K +E G +  FK R+VA G  QI GI F  +SS  P+A SIK ++++A  +  +L H D +QAY+   + +EI++       ++P+      G+  ++++A+YGL Q GR W  +    L   G+EQ   D CVF K+VDGEVV +I+IYVDD+L+
Sbjct:  491 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV 702          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.000e-30
Identity = 77/231 (33.33%), Postives = 127/231 (54.98%), Query Frame = 3
Query:  909 PANRPFHGAATVQLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
            P  +P   +   Q   D+   P  +++   S     W+ A + EI G    G  T+V E P+ +  + ++  +  K +E G +  FK R+VA G  QI GI F  +SS  P+A SIK ++++A  +  +L H D +QAY+   + +EI++       ++P+      G+  ++++A+YGL Q+GR W  +    L   G+EQ   D CVF K+VDGEVV +I+IYVDD+++
Sbjct:  244 PDPQPSMTSPIGQKLSDVQAVPMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIV 467          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 3.050e-30
Identity = 75/219 (34.25%), Postives = 123/219 (56.16%), Query Frame = 3
Query:  945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
            Q   D+   P  +++   S     W+ A + EI G    G  T+V E P+ +  + ++  +  K +E G +  FK R+VA G  QI GI F  +SS  P+A SIK ++++A  +  +L H D +QAY+   + +EI++       ++P+      G+  ++++A+YGL Q+GR W  +    L   G+EQ   D CVF K+VDGEVV +I++YVDD+L+
Sbjct:  350 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILV 561          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A507FH27_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FH27_9FUNG)

HSP 1 Score: 136 bits (343), Expect = 4.030e-30
Identity = 79/203 (38.92%), Postives = 116/203 (57.14%), Query Frame = 3
Query:  972 PKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQVECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPDFPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDL 1580
            P + ++A A P  +HW  AE  E+Q L  N   T V    +   ++ R  YK K+++DG +E+F+ RLVA G  Q  G  + E  SP     + + +L+LAA+ +W+ R  DF  A+L   +D  I++   +    Y   P +   L+KAIYGL QAGR W  ++T+ L AKG++QS AD CVF +  D + V I+ IYVDDL
Sbjct: 1034 PSNRKQAMAGPNKQHWLDAESYELQQLETNNTYTLVNRTASIKCITCRWVYKCKLNQDGSIERFRARLVARGFLQRHGYDYMETYSPVMRIATFRWLLALAALNNWQTRSADFSSAFLYGVLDTPIYMLPPD---GYNADPTKIWLLNKAIYGLKQAGRVWFYRLTSYLKAKGYQQSRADPCVFFQHSDSDSV-ILSIYVDDL 1232          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.230e-30
Identity = 75/219 (34.25%), Postives = 123/219 (56.16%), Query Frame = 3
Query:  945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
            Q   D+   P  +++   S     W+ A + EI G    G  T+V E P+ +  + ++  +  K +E G +   K R+VA G  Q  GI F  +SS  P+A SIK ++++A  +  +L H D +QA++   + +EI++       ++P+      G+A ++++A+YGL Q+GR W  +    L   G+EQ  AD CVF K+VDGEVV +I+IYVDD+L+
Sbjct:  181 QKPSDVGAVPMMYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYL-------RFPEGCGSMFGKAVKVERALYGLKQSGREWGFEAADALIENGYEQCRADPCVFRKLVDGEVVGLIVIYVDDILV 392          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.890e-30
Identity = 92/260 (35.38%), Postives = 138/260 (53.08%), Query Frame = 1
Query:    4 RLYVDLGGPMRVTSLGRSSYVMIIVGDYSRFQAVEFIKKKSDATAALQSYIAECITPKGL--KIGAIRTDSGGEF-----DGDFHLKLDDHGISHELTSPDTPQYNSVAERRLGLLREKTIALMHDQTE-----GGSEKLWAEAMNYACDITNMSCTSSIQGNVTPHEKWYETTTPLEHLQPFGTVCYIRKIITEHKMAPRKEKCIILGISHNHPSGTVRVINVKTGHMVIRQNVSWH---PESPENRQGDGLAAEIEGG 738
            R+Y+DLGG M+  S+G + Y +II  D+SR+  V F+K KS A    + + A+  T KG+  ++   RTD GGEF     +G F      HGI  E T P+TP+YN VAER LGL+ +  +A     T+         +LWAEA++ AC   N + T S +G+ + +E +++   P+    PF     + K   + K  P+ EK   LG +HNHP   VR++  + G ++  +N +W      SP   Q   LA + EGG
Sbjct:   23 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPFLKPA-VFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLT-EAGTVITTRNFTWRHVPAASPAPPQLLPLADDEEGG 279          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.850e-30
Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 3
Query:  945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
            Q   D+   P  +++   S     W+ A + EI G    G  T+V E P+ +  + ++     K SE G +  FK R+VA G  QI GI F  +SS  P+A SIK +++ A  +  +L H D +QAY+   + +EI++       ++P+      G+  +++ A+YGL Q+GR W  +    L   G+EQ   D CVF K+VDGEVV +I+IYVDD+L+
Sbjct:   99 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVEHALYGLKQSGREWGFEAADALIENGYEQCGVDPCVFRKVVDGEVVGLIVIYVDDILV 310          
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 8.040e-30
Identity = 74/219 (33.79%), Postives = 122/219 (55.71%), Query Frame = 3
Query:  945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
            Q   ++   P  + +   S     W+ A + EI G    G  T+V E P+ +  + ++  +  K +E G +  FK R+VA G  QI GI F  +SS  P+A SIK ++++A  +  +L H D +QAY+   + +EI++       ++P+      G+  ++++A+YGL Q+GR W  +    L   G+EQ   D CVF K+VDGEVV +I+IYVDD+++
Sbjct:  204 QKPSNVKAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV 415          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY81_9PHAE5.480e-3334.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE7.780e-3134.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE1.730e-3034.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE3.000e-3033.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE3.050e-3034.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507FH27_9FUNG4.030e-3038.92DNA-directed DNA polymerase n=1 Tax=Chytriomyces c... [more]
A0A6H5L9H4_9PHAE4.230e-3034.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K293_9PHAE4.890e-3035.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRB0_9PHAE6.850e-3035.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE8.040e-3033.79Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26207contigH-paniculata_contig26207:60..1844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score106.7
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog161934.XP_010667912.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1616
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26207.7162.1prot_H-paniculata_contig26207.7162.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26207 60..560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.3914351-CDS-H-paniculata_contig26207:59..5601622929783.3914351-CDS-H-paniculata_contig26207:59..560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26207 60..560 -
1691481008.7702665-CDS-H-paniculata_contig26207:59..5601691481008.7702665-CDS-H-paniculata_contig26207:59..560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26207 60..560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929783.4054642-UTR-H-paniculata_contig26207:560..7301622929783.4054642-UTR-H-paniculata_contig26207:560..730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26207 561..730 -
1691481008.7810233-UTR-H-paniculata_contig26207:560..7301691481008.7810233-UTR-H-paniculata_contig26207:560..730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26207 561..730 -
1622929783.4350505-UTR-H-paniculata_contig26207:899..18441622929783.4350505-UTR-H-paniculata_contig26207:899..1844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26207 900..1844 -
1691481008.7913375-UTR-H-paniculata_contig26207:899..18441691481008.7913375-UTR-H-paniculata_contig26207:899..1844Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig26207 900..1844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26207.7162.1

>prot_H-paniculata_contig26207.7162.1 ID=prot_H-paniculata_contig26207.7162.1|Name=mRNA_H-paniculata_contig26207.7162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMIL
SLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPDFPGEARRLD
KAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIII
YVDDLLINTKCTQSHG*
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mRNA from alignment at H-paniculata_contig26207:60..1844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26207.7162.1 ID=mRNA_H-paniculata_contig26207.7162.1|Name=mRNA_H-paniculata_contig26207.7162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1785bp|location=Sequence derived from alignment at H-paniculata_contig26207:60..1844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCGCCTATACGTCGACCTGGGCGGACCCATGCGGGTAACCAGCTTGGG CCGTAGTTCGTATGTGATGATCATCGTCGGCGACTACTCGCGGTTCCAGG CTGTCGAATTCATCAAGAAGAAGAGCGACGCCACTGCAGCTCTCCAGAGC TACATCGCCGAATGCATCACGCCGAAGGGACTCAAGATCGGTGCCATTCG CACGGACAGCGGCGGGGAGTTCGATGGCGATTTTCACCTGAAGCTGGACG ACCACGGCATTAGTCACGAACTCACATCCCCGGACACGCCGCAATACAAC AGCGTTGCCGAAAGGCGGCTGGGTCTACTGCGCGAGAAAACGATCGCGTT GATGCATGATCAGACGGAGGGCGGCAGCGAGAAACTATGGGCGGAGGCGA TGAACTATGCCTGCGATATCACGAATATGAGCTGCACTTCGTCCATCCAA GGAAACGTTACCCCGCACGAGAAGTGGTACGAGACTACAACGCCGCTGGA ACACCTACAACCTTTTGGGACGGTGTGCTACATACGCAAGATCATCACGG AGCACAAGATGGCGCCACGCAAAGAAAAATGCATCATACTGGGTATTTCC CACAACCACCCGAGCGGAACTGTCCGCGTTATCAACGTCAAGACAGGACA TATGGTGATACGTCAAAACGTGTCATGGCATCCCGAGAGCCCGGAGAACC GGCAGGGCGATGGCCTCGCCGCGGAGATCGAGGGGGGTAATGATAAGGCC ATCGATCGGACTCCACGGCTTGGCAGCAGCGGAAAAATGGAGCTGCCAAC GACGCCGACAATGTAACCGCAACAGGAAGACCAGCCGCTGTAGCCCGAAG AAAACGAGGAGGAACGATAGCAAGAGGAGAAGCAAGACAGGCCTGGTCCC GCGCTGCGCCAGCTAACCGACCATTTCACGGGGCAGCAACCGTCCGTTTT CTCTACGCGTACTAGAAGCGGCAGGAGCGCCAACAACGGCGACGGCGGTG GAGCTGCGCTACAAAGCGTCATCACAGACGACATTGACCTTGACGACGAA GAAGTCATGGCTTATAACGAAAGCGACATCATGGCGATGCAGGTCGCACT GGCGATGCCCGAAGAACTGAGGGGTGACCTCCTCGTGCAACCCAAGCATC ACCGGGAGGCGCAGGCGTCGCCGGGGTGGAAACACTGGCAAGGAGCGGAA GAAGTCGAGATTCAAGGCCTCATCGACAACGGAGTTTGAACGCAAGTGGA GTGCCCAAAGAACAAGCTGGTCGTGAGCACGAGGATGCCCTACAAAAGGA AAATCAGCGAGGATGGCAAAGTGGAGAAATTCAAGTGCCGCCTGGTCGCC CACGGGAACCGTCAGATCAAGGGCATCTACTTCCAGGAAGCTTCGTCCCC TGCACCCGCAGCGGTCAGCATAAAAATGATATTGTCGCTTGCGGCGATCC AGGACTGGGAACTTCGGCACGTCGACTTTGAACAAGCGTATCTGCAGGTG CCTGTCGACCAGGAGATTTTCGTCGAAATTCACGAAATTCACGTAAAATA CCCGGATTTCCCAGGAGAGGCGAGGCGCCTCGACAAGGCAATCTACGGAT TGGTGCAAGCCGGCAGATGCTGGAGTACGAAGGTTACCGCGGACCTCAGC GCAAAAGGGTTCGAGCAATCGCACGCCGACTCGTGTGTGTTCCACAAGAT CGTGGACGGGGAGGTGGTCGCAATAATCATCATATACGTGGATGATCTAC TGATCAACACCAAATGCACCCAAAGTCATGGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig26207:60..1844-

>mRNA_H-paniculata_contig26207.7162.1 ID=mRNA_H-paniculata_contig26207.7162.1|Name=mRNA_H-paniculata_contig26207.7162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig26207:60..1844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCTACAAAAGGAAAATCAGCGAGGATGGCAAAGTGGAGAAATTCAA
GTGCCGCCTGGTCGCCCACGGGAACCGTCAGATCAAGGGCATCTACTTCC
AGGAAGCTTCGTCCCCTGCACCCGCAGCGGTCAGCATAAAAATGATATTG
TCGCTTGCGGCGATCCAGGACTGGGAACTTCGGCACGTCGACTTTGAACA
AGCGTATCTGCAGGTGCCTGTCGACCAGGAGATTTTCGTCGAAATTCACG
AAATTCACGTAAAATACCCGGATTTCCCAGGAGAGGCGAGGCGCCTCGAC
AAGGCAATCTACGGATTGGTGCAAGCCGGCAGATGCTGGAGTACGAAGGT
TACCGCGGACCTCAGCGCAAAAGGGTTCGAGCAATCGCACGCCGACTCGT
GTGTGTTCCACAAGATCGTGGACGGGGAGGTGGTCGCAATAATCATCATA
TACGTGGATGATCTACTGATCAACACCAAATGCACCCAAAGTCATGGATG
AATGCCCTACAAAAGGAAAATCAGCGAGGATGGCAAAGTGGAGAAATTCA
AGTGCCGCCTGGTCGCCCACGGGAACCGTCAGATCAAGGGCATCTACTTC
CAGGAAGCTTCGTCCCCTGCACCCGCAGCGGTCAGCATAAAAATGATATT
GTCGCTTGCGGCGATCCAGGACTGGGAACTTCGGCACGTCGACTTTGAAC
AAGCGTATCTGCAGGTGCCTGTCGACCAGGAGATTTTCGTCGAAATTCAC
GAAATTCACGTAAAATACCCGGATTTCCCAGGAGAGGCGAGGCGCCTCGA
CAAGGCAATCTACGGATTGGTGCAAGCCGGCAGATGCTGGAGTACGAAGG
TTACCGCGGACCTCAGCGCAAAAGGGTTCGAGCAATCGCACGCCGACTCG
TGTGTGTTCCACAAGATCGTGGACGGGGAGGTGGTCGCAATAATCATCAT
ATACGTGGATGATCTACTGATCAACACCAAATGCACCCAAAGTCATGGAT
GA
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