mRNA_H-paniculata_contig26207.7162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 140 bits (354), Expect = 5.480e-33 Identity = 78/224 (34.82%), Postives = 121/224 (54.02%), Query Frame = 3
Query: 945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPDFPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLINTKCTQSHG 1613
Q D+ P +++ S W A + EI G G T+V E P+ + + + + K +E G + FK R+VA G QI GI F +SS P A SIK ++++A + +L H D +QAY+ +++EI++ E H G+ ++++A+YGL Q+GR W + L G+EQ D CVF K+VDGEVV +I+IYVDD+L+ + G
Sbjct: 93 QKPSDVEAVPMTYKDVMCSKCMVFWVAAMKKEIDGRDKTGTFTKVMELPEGRKAIGSEWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGH---GSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREG 313
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE) HSP 1 Score: 137 bits (346), Expect = 7.780e-31 Identity = 76/219 (34.70%), Postives = 123/219 (56.16%), Query Frame = 3
Query: 945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
Q D+ P +++ S W+ A + EI G G T+V E P+ + + ++ + K +E G + FK R+VA G QI GI F +SS P+A SIK ++++A + +L H D +QAY+ + +EI++ ++P+ G+ ++++A+YGL Q+GR W + L G+EQ D CVF K+VDGEVV +I+IYVDD+L+
Sbjct: 449 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV 660
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.730e-30 Identity = 76/219 (34.70%), Postives = 122/219 (55.71%), Query Frame = 3
Query: 945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
Q D+ P +++ S W+ A + EI G G T+V E P+ + + ++ + K +E G + FK R+VA G QI GI F +SS P+A SIK ++++A + +L H D +QAY+ + +EI++ ++P+ G+ ++++A+YGL Q GR W + L G+EQ D CVF K+VDGEVV +I+IYVDD+L+
Sbjct: 491 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV 702
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE) HSP 1 Score: 136 bits (342), Expect = 3.000e-30 Identity = 77/231 (33.33%), Postives = 127/231 (54.98%), Query Frame = 3
Query: 909 PANRPFHGAATVQLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
P +P + Q D+ P +++ S W+ A + EI G G T+V E P+ + + ++ + K +E G + FK R+VA G QI GI F +SS P+A SIK ++++A + +L H D +QAY+ + +EI++ ++P+ G+ ++++A+YGL Q+GR W + L G+EQ D CVF K+VDGEVV +I+IYVDD+++
Sbjct: 244 PDPQPSMTSPIGQKLSDVQAVPMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIV 467
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 136 bits (343), Expect = 3.050e-30 Identity = 75/219 (34.25%), Postives = 123/219 (56.16%), Query Frame = 3
Query: 945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
Q D+ P +++ S W+ A + EI G G T+V E P+ + + ++ + K +E G + FK R+VA G QI GI F +SS P+A SIK ++++A + +L H D +QAY+ + +EI++ ++P+ G+ ++++A+YGL Q+GR W + L G+EQ D CVF K+VDGEVV +I++YVDD+L+
Sbjct: 350 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILV 561
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A507FH27_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FH27_9FUNG) HSP 1 Score: 136 bits (343), Expect = 4.030e-30 Identity = 79/203 (38.92%), Postives = 116/203 (57.14%), Query Frame = 3
Query: 972 PKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQVECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPDFPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDL 1580
P + ++A A P +HW AE E+Q L N T V + ++ R YK K+++DG +E+F+ RLVA G Q G + E SP + + +L+LAA+ +W+ R DF A+L +D I++ + Y P + L+KAIYGL QAGR W ++T+ L AKG++QS AD CVF + D + V I+ IYVDDL
Sbjct: 1034 PSNRKQAMAGPNKQHWLDAESYELQQLETNNTYTLVNRTASIKCITCRWVYKCKLNQDGSIERFRARLVARGFLQRHGYDYMETYSPVMRIATFRWLLALAALNNWQTRSADFSSAFLYGVLDTPIYMLPPD---GYNADPTKIWLLNKAIYGLKQAGRVWFYRLTSYLKAKGYQQSRADPCVFFQHSDSDSV-ILSIYVDDL 1232
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE) HSP 1 Score: 132 bits (333), Expect = 4.230e-30 Identity = 75/219 (34.25%), Postives = 123/219 (56.16%), Query Frame = 3
Query: 945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
Q D+ P +++ S W+ A + EI G G T+V E P+ + + ++ + K +E G + K R+VA G Q GI F +SS P+A SIK ++++A + +L H D +QA++ + +EI++ ++P+ G+A ++++A+YGL Q+GR W + L G+EQ AD CVF K+VDGEVV +I+IYVDD+L+
Sbjct: 181 QKPSDVGAVPMMYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYL-------RFPEGCGSMFGKAVKVERALYGLKQSGREWGFEAADALIENGYEQCRADPCVFRKLVDGEVVGLIVIYVDDILV 392
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.890e-30 Identity = 92/260 (35.38%), Postives = 138/260 (53.08%), Query Frame = 1
Query: 4 RLYVDLGGPMRVTSLGRSSYVMIIVGDYSRFQAVEFIKKKSDATAALQSYIAECITPKGL--KIGAIRTDSGGEF-----DGDFHLKLDDHGISHELTSPDTPQYNSVAERRLGLLREKTIALMHDQTE-----GGSEKLWAEAMNYACDITNMSCTSSIQGNVTPHEKWYETTTPLEHLQPFGTVCYIRKIITEHKMAPRKEKCIILGISHNHPSGTVRVINVKTGHMVIRQNVSWH---PESPENRQGDGLAAEIEGG 738
R+Y+DLGG M+ S+G + Y +II D+SR+ V F+K KS A + + A+ T KG+ ++ RTD GGEF +G F HGI E T P+TP+YN VAER LGL+ + +A T+ +LWAEA++ AC N + T S +G+ + +E +++ P+ PF + K + K P+ EK LG +HNHP VR++ + G ++ +N +W SP Q LA + EGG
Sbjct: 23 RVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSGAAVGFEKFPADHRT-KGVPREVYIARTDGGGEFQGQFAEGQFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPFLKPA-VFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLT-EAGTVITTRNFTWRHVPAASPAPPQLLPLADDEEGG 279
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE) HSP 1 Score: 134 bits (337), Expect = 6.850e-30 Identity = 77/219 (35.16%), Postives = 120/219 (54.79%), Query Frame = 3
Query: 945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
Q D+ P +++ S W+ A + EI G G T+V E P+ + + ++ K SE G + FK R+VA G QI GI F +SS P+A SIK +++ A + +L H D +QAY+ + +EI++ ++P+ G+ +++ A+YGL Q+GR W + L G+EQ D CVF K+VDGEVV +I+IYVDD+L+
Sbjct: 99 QKPSDVEAVPMTYKDVMCSKYKVFWEAAMKNEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVEHALYGLKQSGREWGFEAADALIENGYEQCGVDPCVFRKVVDGEVVGLIVIYVDDILV 310
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 134 bits (338), Expect = 8.040e-30 Identity = 74/219 (33.79%), Postives = 122/219 (55.71%), Query Frame = 3
Query: 945 QLRGDLLVQPKHHREAQASPGWKHWQGAEEVEIQGLIDNGV*TQV-ECPKNKLVVSTRMPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILSLAAIQDWELRHVDFEQAYLQVPVDQEIFVEIHEIHVKYPD----FPGEARRLDKAIYGLVQAGRCWSTKVTADLSAKGFEQSHADSCVFHKIVDGEVVAIIIIYVDDLLI 1586
Q ++ P + + S W+ A + EI G G T+V E P+ + + ++ + K +E G + FK R+VA G QI GI F +SS P+A SIK ++++A + +L H D +QAY+ + +EI++ ++P+ G+ ++++A+YGL Q+GR W + L G+EQ D CVF K+VDGEVV +I+IYVDD+++
Sbjct: 204 QKPSNVKAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYL-------RFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIV 415 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26207.7162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26207.7162.1 >prot_H-paniculata_contig26207.7162.1 ID=prot_H-paniculata_contig26207.7162.1|Name=mRNA_H-paniculata_contig26207.7162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp MPYKRKISEDGKVEKFKCRLVAHGNRQIKGIYFQEASSPAPAAVSIKMILback to top mRNA from alignment at H-paniculata_contig26207:60..1844- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26207.7162.1 ID=mRNA_H-paniculata_contig26207.7162.1|Name=mRNA_H-paniculata_contig26207.7162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1785bp|location=Sequence derived from alignment at H-paniculata_contig26207:60..1844- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26207:60..1844- >mRNA_H-paniculata_contig26207.7162.1 ID=mRNA_H-paniculata_contig26207.7162.1|Name=mRNA_H-paniculata_contig26207.7162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig26207:60..1844- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |