mRNA_H-paniculata_contig26124.7139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26124.7139.1
Unique NamemRNA_H-paniculata_contig26124.7139.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: D7G7D3_ECTSI (Methyltransf_FA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D3_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 4.340e-34
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   19 KEQASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKAAAAKSFALPEALPPDI 252
            +  A+ +PHKIHIFSLDK VCKQIRDNDVKAYF+GF PKYVEWLSDWSFNVVF D E AKKAAAAKSF LP+ LP +I
Sbjct:  442 EPMATTFPHKIHIFSLDKTVCKQIRDNDVKAYFDGFGPKYVEWLSDWSFNVVFDDAEGAKKAAAAKSFGLPDTLPKEI 519          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: A0A6H5K6R7_9PHAE (Methyltransf_FA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R7_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.130e-34
Identity = 60/78 (76.92%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   19 KEQASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKAAAAKSFALPEALPPDI 252
            +  A+ +PHKIH+FSLDK VCKQIRDNDVKAYF+GF PKYVEWLSDWSFNVVF D E AKKAAAAKSF LP+ LP +I
Sbjct:  452 EPMATTFPHKIHVFSLDKTVCKQIRDNDVKAYFDGFGPKYVEWLSDWSFNVVFDDAEGAKKAAAAKSFGLPDTLPKEI 529          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: A0A835Z5S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5S9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.740e-14
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   22 EQASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKA 204
            E     P K+H+FSLDK  CK++R  DV+AYF     +YVEW++DWSFNVVF  E +A  A
Sbjct:  522 EPVRAIPDKLHVFSLDKFTCKKMRQRDVQAYFGTHGARYVEWINDWSFNVVFPSERDAGNA 582          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: A0A1Z5JT33_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT33_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 5.160e-12
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   22 EQASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKAAAAKSFALPEALPPD 249
            E   L P KIHIFS+D    KQIR +D+ A+F  + P YVEWL D S NV+FQD   A +A    S  +P + PPD
Sbjct:  409 EPPRLTPEKIHIFSIDWAAFKQIRTDDIMAFFSIYGPSYVEWLGDLSCNVLFQDRFSAARALENLSQEIP-SPPPD 483          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: A0A7S2A5W5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A5W5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.480e-11
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   28 ASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKAAAAKSFALP 231
            A L   KIHIFSLD    KQIR  D+ A+F  + P YVEWL+D+S N++F  E  A +A A  +  LP
Sbjct:  412 AVLVKEKIHIFSLDWAAFKQIRSPDIMAHFADYGPSYVEWLNDYSCNILFDCEYSAARALANCTMELP 479          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: A0A7S1BB62_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BB62_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.430e-9
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   22 EQASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKA 204
            E   L P KIH+F LD    KQ+R+ND+  YF  + P  +EWL ++S N++FQD   A +A
Sbjct:  466 ETDVLIPEKIHLFCLDCAAFKQMRNNDLMEYFSDYGPYCIEWLGEFSCNIIFQDRHTASRA 526          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: A0A7S0GEV2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEV2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.700e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   85 QIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKAAAAKSFALP 231
            QIR +D+  Y   F P YVEWLSD+S N++F+D   A +A A  S A+P
Sbjct:    3 QIRTDDIMEYLSDFEPSYVEWLSDFSCNILFEDSLSAARALAGLSQAIP 51          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: K0S7G4_THAOC (Methyltransf_FA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S7G4_THAOC)

HSP 1 Score: 53.9 bits (128), Expect = 1.850e-6
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   13 FLKEQASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWL 150
            F+  + S+ P KIH+FS D    KQIR +DV AYF  + P YVEWL
Sbjct:  514 FIPRKVSIVPTKIHLFSNDWAPFKQIRTDDVMAYFRDYGPSYVEWL 559          
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Match: A0A484EBB6_BRELC (Methyltransf_FA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBB6_BRELC)

HSP 1 Score: 53.9 bits (128), Expect = 1.870e-6
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   49 IHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWLSDWSFNVVFQDEEEAKKAAAA 213
            +H++SLD    +Q+R  DVK YF GF+P Y+EW +D S  +VF D   A++A  A
Sbjct:  388 LHMYSLDDDF-QQVRTTDVKRYFTGFAPAYIEWFNDSSCTIVFNDTFTAERALVA 441          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26124.7139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G7D3_ECTSI4.340e-3478.21Methyltransf_FA domain-containing protein n=1 Tax=... [more]
A0A6H5K6R7_9PHAE6.130e-3476.92Methyltransf_FA domain-containing protein n=1 Tax=... [more]
A0A835Z5S9_9STRA6.740e-1452.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5JT33_FISSO5.160e-1248.68Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2A5W5_9STRA8.480e-1148.53Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1BB62_9STRA1.430e-944.26Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S0GEV2_9STRA1.700e-648.98Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K0S7G4_THAOC1.850e-652.17Methyltransf_FA domain-containing protein n=1 Tax=... [more]
A0A484EBB6_BRELC1.870e-645.45Methyltransf_FA domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26124contigH-paniculata_contig26124:284..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.9e-29
Seed eggNOG ortholog2880.D7G7D3
Preferred nameC17orf85
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000340,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032991,GO:0034518,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0070013,GO:0097159,GO:0098542,GO:1901363
EggNOG free text desc.RNA 7-methylguanosine cap binding
EggNOG OGs2CMTT@1,2QRX4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929780.9610376-CDS-H-paniculata_contig26124:283..5381622929780.9610376-CDS-H-paniculata_contig26124:283..538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26124 284..538 +
1691481007.7555385-CDS-H-paniculata_contig26124:283..5381691481007.7555385-CDS-H-paniculata_contig26124:283..538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26124 284..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26124.7139.1prot_H-paniculata_contig26124.7139.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26124 284..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26124.7139.1

>prot_H-paniculata_contig26124.7139.1 ID=prot_H-paniculata_contig26124.7139.1|Name=mRNA_H-paniculata_contig26124.7139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MCLFFLKEQASLYPHKIHIFSLDKVVCKQIRDNDVKAYFEGFSPKYVEWL
SDWSFNVVFQDEEEAKKAAAAKSFALPEALPPDIR
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mRNA from alignment at H-paniculata_contig26124:284..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26124.7139.1 ID=mRNA_H-paniculata_contig26124.7139.1|Name=mRNA_H-paniculata_contig26124.7139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig26124:284..538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTTGTTTTTCTTGAAAGAACAGGCAAGCTTGTACCCCCACAAGAT ACACATCTTCAGCCTGGACAAGGTGGTGTGCAAGCAGATCCGAGACAACG ACGTGAAGGCCTATTTCGAGGGTTTCTCGCCCAAGTACGTGGAGTGGCTT AGCGACTGGTCGTTCAACGTGGTCTTCCAAGACGAGGAAGAGGCAAAAAA GGCCGCCGCGGCTAAGTCGTTCGCTTTACCGGAGGCACTGCCACCAGATA TTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig26124:284..538+

>mRNA_H-paniculata_contig26124.7139.1 ID=mRNA_H-paniculata_contig26124.7139.1|Name=mRNA_H-paniculata_contig26124.7139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig26124:284..538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTTGTTTTTCTTGAAAGAACAGGCAAGCTTGTACCCCCACAAGAT
ACACATCTTCAGCCTGGACAAGGTGGTGTGCAAGCAGATCCGAGACAACG
ACGTGAAGGCCTATTTCGAGGGTTTCTCGCCCAAGTACGTGGAGTGGCTT
AGCGACTGGTCGTTCAACGTGGTCTTCCAAGACGAGGAAGAGGCAAAAAA
GGCCGCCGCGGCTAAGTCGTTCGCTTTACCGGAGGCACTGCCACCAGATA
TTCGGATGTGTTTGTTTTTCTTGAAAGAACAGGCAAGCTTGTACCCCCAC
AAGATACACATCTTCAGCCTGGACAAGGTGGTGTGCAAGCAGATCCGAGA
CAACGACGTGAAGGCCTATTTCGAGGGTTTCTCGCCCAAGTACGTGGAGT
GGCTTAGCGACTGGTCGTTCAACGTGGTCTTCCAAGACGAGGAAGAGGCA
AAAAAGGCCGCCGCGGCTAAGTCGTTCGCTTTACCGGAGGCACTGCCACC
AGATATTCGG
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