mRNA_H-paniculata_contig26013.7102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A6H5JPG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPG3_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 3.520e-14 Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 25 CLVYPLSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGNRRVI 216
C LSG+ T + LGD+DGDG LDVVA VTTAEG +VWA+ A GL L N+PV L NR+ I
Sbjct: 455 CWNTVLSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVALRNRKGI 518
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A835YVT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT5_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.970e-10 Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 43 SGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
SGA+T+ ++GD+DGDGQLDVV AVT+ +GEG ++A+ A G L +P++LG
Sbjct: 383 SGAMTNAAVVGDVDGDGQLDVVIAVTSPDGEGHLYAMDAASGRDLDGWPLRLGR 436
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S0HP53_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HP53_9CRYP) HSP 1 Score: 55.1 bits (131), Expect = 5.260e-7 Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
+SG T ++GD++GDG +D+V A T+ G +WA+H G TL NFPVK G
Sbjct: 368 ISGFSTQGPVVGDVNGDGLVDIVLATTS----GHIWALHGSSGRTLENFPVKTGG 418
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: UPI000359DD1F (protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359DD1F) HSP 1 Score: 52.4 bits (124), Expect = 4.810e-6 Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 1
Query: 1 LKSGNTHLCLVYPLSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGNR 207
L GN + + G++ + D+D DGQLD+V A EG V+A+H +DG L N+P K G R
Sbjct: 355 LDGGNGEILWTTEIRGSVFAGSRVVDVDVDGQLDIVVA----SDEGDVYALHGLDGSVLPNYPFKTGKR 419
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: L1I970_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I970_GUITC) HSP 1 Score: 52.0 bits (123), Expect = 6.700e-6 Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
+SG T ++GD++GDG +D+V A T+ G +WA+ G TL NFPVK G
Sbjct: 912 ISGFSTQGPVVGDVNGDGLVDIVLATTS----GHIWALQGSSGRTLENFPVKTGG 962
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: D2VEQ1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VEQ1_NAEGR) HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5 Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query: 40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
LSG+ +GD+DGDG+LD+V +T G +WAV G L +FPVK G+
Sbjct: 473 LSGSAAQAPTVGDVDGDGKLDLVVGTST----GHIWAVSGETGKVLPHFPVKTGS 523
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7V4DBM8_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V4DBM8_9BACT) HSP 1 Score: 50.4 bits (119), Expect = 2.340e-5 Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 70 LGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
LGD+DGDG+LD+V A GEG++WA H +G L++FP+ LG+
Sbjct: 795 LGDLDGDGELDIVLA-----GEGKIWAFHR-NGALLSHFPISLGD 833
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S0TK69_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TK69_HEMAN) HSP 1 Score: 50.1 bits (118), Expect = 3.050e-5 Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
+SG + +GD+DGDG +DVV A T+ G VWA++ +G TL FPVK G
Sbjct: 333 VSGFSSQGPTIGDVDGDGVVDVVVATTS----GHVWALNGKNGDTLPGFPVKCGG 383
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S0M462_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M462_9CRYP) HSP 1 Score: 50.1 bits (118), Expect = 3.100e-5 Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1
Query: 40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
LSG + LGD++GDG +DVV A T G +WA++ G TL NFPV+ G
Sbjct: 202 LSGFSSQGPTLGDVNGDGVVDVVVATTN----GHIWALNGRTGETLRNFPVRAGG 252
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S1EHG6_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHG6_HEMAN) HSP 1 Score: 50.1 bits (118), Expect = 3.140e-5 Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
+SG + +GD+DGDG +DVV A T+ G VWA++ +G TL FPVK G
Sbjct: 364 VSGFSSQGPTIGDVDGDGVVDVVVATTS----GHVWALNGKNGDTLPGFPVKCGG 414 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26013.7102.1 >prot_H-paniculata_contig26013.7102.1 ID=prot_H-paniculata_contig26013.7102.1|Name=mRNA_H-paniculata_contig26013.7102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp LKSGNTHLCLVYPLSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAback to top mRNA from alignment at H-paniculata_contig26013:3086..3316- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26013.7102.1 ID=mRNA_H-paniculata_contig26013.7102.1|Name=mRNA_H-paniculata_contig26013.7102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig26013:3086..3316- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26013:3086..3316- >mRNA_H-paniculata_contig26013.7102.1 ID=mRNA_H-paniculata_contig26013.7102.1|Name=mRNA_H-paniculata_contig26013.7102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig26013:3086..3316- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |