mRNA_H-paniculata_contig26013.7102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26013.7102.1
Unique NamemRNA_H-paniculata_contig26013.7102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A6H5JPG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPG3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.520e-14
Identity = 37/64 (57.81%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   25 CLVYPLSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGNRRVI 216
            C    LSG+ T  + LGD+DGDG LDVVA VTTAEG  +VWA+ A  GL L N+PV L NR+ I
Sbjct:  455 CWNTVLSGSTTSMLTLGDVDGDGALDVVAGVTTAEGSAEVWALSAESGLPLPNYPVALRNRKGI 518          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A835YVT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.970e-10
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   43 SGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            SGA+T+  ++GD+DGDGQLDVV AVT+ +GEG ++A+ A  G  L  +P++LG 
Sbjct:  383 SGAMTNAAVVGDVDGDGQLDVVIAVTSPDGEGHLYAMDAASGRDLDGWPLRLGR 436          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S0HP53_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HP53_9CRYP)

HSP 1 Score: 55.1 bits (131), Expect = 5.260e-7
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            +SG  T   ++GD++GDG +D+V A T+    G +WA+H   G TL NFPVK G 
Sbjct:  368 ISGFSTQGPVVGDVNGDGLVDIVLATTS----GHIWALHGSSGRTLENFPVKTGG 418          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: UPI000359DD1F (protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359DD1F)

HSP 1 Score: 52.4 bits (124), Expect = 4.810e-6
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 1
Query:    1 LKSGNTHLCLVYPLSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGNR 207
            L  GN  +     + G++     + D+D DGQLD+V A      EG V+A+H +DG  L N+P K G R
Sbjct:  355 LDGGNGEILWTTEIRGSVFAGSRVVDVDVDGQLDIVVA----SDEGDVYALHGLDGSVLPNYPFKTGKR 419          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: L1I970_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I970_GUITC)

HSP 1 Score: 52.0 bits (123), Expect = 6.700e-6
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            +SG  T   ++GD++GDG +D+V A T+    G +WA+    G TL NFPVK G 
Sbjct:  912 ISGFSTQGPVVGDVNGDGLVDIVLATTS----GHIWALQGSSGRTLENFPVKTGG 962          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: D2VEQ1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VEQ1_NAEGR)

HSP 1 Score: 51.2 bits (121), Expect = 1.240e-5
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            LSG+      +GD+DGDG+LD+V   +T    G +WAV    G  L +FPVK G+
Sbjct:  473 LSGSAAQAPTVGDVDGDGKLDLVVGTST----GHIWAVSGETGKVLPHFPVKTGS 523          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7V4DBM8_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V4DBM8_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 2.340e-5
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   70 LGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            LGD+DGDG+LD+V A     GEG++WA H  +G  L++FP+ LG+
Sbjct:  795 LGDLDGDGELDIVLA-----GEGKIWAFHR-NGALLSHFPISLGD 833          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S0TK69_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TK69_HEMAN)

HSP 1 Score: 50.1 bits (118), Expect = 3.050e-5
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            +SG  +    +GD+DGDG +DVV A T+    G VWA++  +G TL  FPVK G 
Sbjct:  333 VSGFSSQGPTIGDVDGDGVVDVVVATTS----GHVWALNGKNGDTLPGFPVKCGG 383          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S0M462_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M462_9CRYP)

HSP 1 Score: 50.1 bits (118), Expect = 3.100e-5
Identity = 25/55 (45.45%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            LSG  +    LGD++GDG +DVV A T     G +WA++   G TL NFPV+ G 
Sbjct:  202 LSGFSSQGPTLGDVNGDGVVDVVVATTN----GHIWALNGRTGETLRNFPVRAGG 252          
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Match: A0A7S1EHG6_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EHG6_HEMAN)

HSP 1 Score: 50.1 bits (118), Expect = 3.140e-5
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   40 LSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWAVHAIDGLTLANFPVKLGN 204
            +SG  +    +GD+DGDG +DVV A T+    G VWA++  +G TL  FPVK G 
Sbjct:  364 VSGFSSQGPTIGDVDGDGVVDVVVATTS----GHVWALNGKNGDTLPGFPVKCGG 414          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26013.7102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JPG3_9PHAE3.520e-1457.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVT5_9STRA2.970e-1051.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0HP53_9CRYP5.260e-745.45Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
UPI000359DD1F4.810e-637.68protein DEFECTIVE IN EXINE FORMATION 1 n=1 Tax=Apl... [more]
L1I970_GUITC6.700e-643.64Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
D2VEQ1_NAEGR1.240e-543.64Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A7V4DBM8_9BACT2.340e-551.11T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7S0TK69_HEMAN3.050e-545.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0M462_9CRYP3.100e-545.45Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S1EHG6_HEMAN3.140e-545.45Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26013contigH-paniculata_contig26013:3086..3316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog2880.D7FJ73
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009987,GO:0010208,GO:0010584,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0022607,GO:0030198,GO:0032501,GO:0032502,GO:0032989,GO:0043062,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046872,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0071840,GO:0085029
EggNOG OGs2CMU7@1,2QRZ6@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.4626231-CDS-H-paniculata_contig26013:3085..33161622929776.4626231-CDS-H-paniculata_contig26013:3085..3316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26013 3086..3316 -
1691481006.2273226-CDS-H-paniculata_contig26013:3085..33161691481006.2273226-CDS-H-paniculata_contig26013:3085..3316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26013 3086..3316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26013.7102.1prot_H-paniculata_contig26013.7102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26013 3086..3316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26013.7102.1

>prot_H-paniculata_contig26013.7102.1 ID=prot_H-paniculata_contig26013.7102.1|Name=mRNA_H-paniculata_contig26013.7102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
LKSGNTHLCLVYPLSGAITDTVMLGDIDGDGQLDVVAAVTTAEGEGQVWA
VHAIDGLTLANFPVKLGNRRVIYLVVG
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mRNA from alignment at H-paniculata_contig26013:3086..3316-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26013.7102.1 ID=mRNA_H-paniculata_contig26013.7102.1|Name=mRNA_H-paniculata_contig26013.7102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig26013:3086..3316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAATCTGGGAACACCCATCTGTGTCTTGTATATCCCTTGTCAGGGGC AATCACAGACACGGTCATGCTGGGGGATATAGATGGAGATGGGCAGCTGG ATGTGGTGGCAGCGGTGACCACCGCAGAGGGGGAGGGTCAAGTGTGGGCG GTGCACGCCATTGATGGGCTGACGCTAGCCAACTTCCCAGTCAAACTTGG CAACAGGCGAGTGATCTACCTTGTGGTGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig26013:3086..3316-

>mRNA_H-paniculata_contig26013.7102.1 ID=mRNA_H-paniculata_contig26013.7102.1|Name=mRNA_H-paniculata_contig26013.7102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig26013:3086..3316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAATCTGGGAACACCCATCTGTGTCTTGTATATCCCTTGTCAGGGGC
AATCACAGACACGGTCATGCTGGGGGATATAGATGGAGATGGGCAGCTGG
ATGTGGTGGCAGCGGTGACCACCGCAGAGGGGGAGGGTCAAGTGTGGGCG
GTGCACGCCATTGATGGGCTGACGCTAGCCAACTTCCCAGTCAAACTTGG
CAACAGGCGAGTGATCTACCTTGTGGTGGGTCTCAAATCTGGGAACACCC
ATCTGTGTCTTGTATATCCCTTGTCAGGGGCAATCACAGACACGGTCATG
CTGGGGGATATAGATGGAGATGGGCAGCTGGATGTGGTGGCAGCGGTGAC
CACCGCAGAGGGGGAGGGTCAAGTGTGGGCGGTGCACGCCATTGATGGGC
TGACGCTAGCCAACTTCCCAGTCAAACTTGGCAACAGGCGAGTGATCTAC
CTTGTGGTGGGT
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