mRNA_H-paniculata_contig25892.7057.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25892.7057.1
Unique NamemRNA_H-paniculata_contig25892.7057.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.380e-24
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVA 294
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID   + +  PSAA++KTV+AVA
Sbjct:  127 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVA 223
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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.530e-24
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DVR SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:   78 DVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATRK 177
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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.380e-24
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  113 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 212
[Close]
BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.760e-23
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DV  SKY+ FWE A+++E+  H KTGTFT V +  +G+K +   ++FS+KTNE G +V FKAR+VA G ++I  ID     + +PSAA++KTV+AVA ++
Sbjct:    5 DVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEK 104
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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.470e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DV  SK + FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID    F+  PSAA++KTV+AVA ++
Sbjct:  113 DVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEK 212
[Close]
BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.240e-23
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    4 DDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            +DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  217 NDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 317
[Close]
BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.540e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  463 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEK 562
[Close]
BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.680e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  653 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 752
[Close]
BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.730e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  364 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 463
[Close]
BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.740e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    7 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 303
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  505 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 604
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K282_9PHAE2.380e-2452.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEA7_9PHAE4.530e-2452.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE8.380e-2451.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LAZ3_9PHAE1.760e-2348.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNP9_9PHAE3.470e-2351.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE6.240e-2350.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE8.540e-2351.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE8.680e-2351.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE8.730e-2351.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE8.740e-2351.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25892contigH-paniculata_contig25892:72..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score75.5
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog7425.NV19274-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929770.4103847-CDS-H-paniculata_contig25892:71..3801622929770.4103847-CDS-H-paniculata_contig25892:71..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25892 72..380 -
1691481003.6611955-CDS-H-paniculata_contig25892:71..3801691481003.6611955-CDS-H-paniculata_contig25892:71..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25892 72..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25892.7057.1prot_H-paniculata_contig25892.7057.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25892 72..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25892.7057.1

>prot_H-paniculata_contig25892.7057.1 ID=prot_H-paniculata_contig25892.7057.1|Name=mRNA_H-paniculata_contig25892.7057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
IDDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDNEGKKPLREPFIFSY
KTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQ
ED*
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mRNA from alignment at H-paniculata_contig25892:72..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25892.7057.1 ID=mRNA_H-paniculata_contig25892.7057.1|Name=mRNA_H-paniculata_contig25892.7057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig25892:72..380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGATGATGTGCGACGATCAAAATACCGTCCGTTTTGGGAAGAGGCGAT
TCAAAGGGAAATGGGGGGCCATGCTAAGACGGGGACTTTTACCGTAGTAA
GTGACAATGAAGGGAAGAAACCGTTGAGGGAGCCGTTCATTTTTTCGTAT
AAAACTAACGAGATGGGGAATTTGGTAAAGTTCAAGGCAAGATTGGTAGC
TGATGGAAGGACACAAATCCAAGACATAGACCACGATGAAGTTTTTGCCC
CTACACCTTCCGCCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAG
GAGGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig25892:72..380-

>mRNA_H-paniculata_contig25892.7057.1 ID=mRNA_H-paniculata_contig25892.7057.1|Name=mRNA_H-paniculata_contig25892.7057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig25892:72..380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGATGATGTGCGACGATCAAAATACCGTCCGTTTTGGGAAGAGGCGAT
TCAAAGGGAAATGGGGGGCCATGCTAAGACGGGGACTTTTACCGTAGTAA
GTGACAATGAAGGGAAGAAACCGTTGAGGGAGCCGTTCATTTTTTCGTAT
AAAACTAACGAGATGGGGAATTTGGTAAAGTTCAAGGCAAGATTGGTAGC
TGATGGAAGGACACAAATCCAAGACATAGACCACGATGAAGTTTTTGCCC
CTACACCTTCCGCCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAG
GAGGATTAAATAGATGATGTGCGACGATCAAAATACCGTCCGTTTTGGGA
AGAGGCGATTCAAAGGGAAATGGGGGGCCATGCTAAGACGGGGACTTTTA
CCGTAGTAAGTGACAATGAAGGGAAGAAACCGTTGAGGGAGCCGTTCATT
TTTTCGTATAAAACTAACGAGATGGGGAATTTGGTAAAGTTCAAGGCAAG
ATTGGTAGCTGATGGAAGGACACAAATCCAAGACATAGACCACGATGAAG
TTTTTGCCCCTACACCTTCCGCCGCTGCTGTAAAGACGGTGTTAGCCGTA
GCAGTACAGGAGGATTAA
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