prot_H-paniculata_contig25892.7057.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig25892.7057.1
Unique Name	prot_H-paniculata_contig25892.7057.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	103

Homology

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.380e-24
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVA 98
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID   + +  PSAA++KTV+AVA
Sbjct:  127 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAVA 223

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.530e-24
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DVR SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:   78 DVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATRK 177

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.380e-24
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  113 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 212

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.760e-23
Identity = 48/100 (48.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DV  SKY+ FWE A+++E+  H KTGTFT V +  +G+K +   ++FS+KTNE G +V FKAR+VA G ++I  ID     + +PSAA++KTV+AVA ++
Sbjct:    5 DVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEK 104

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.470e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DV  SK + FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID    F+  PSAA++KTV+AVA ++
Sbjct:  113 DVMCSKCKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVATEK 212

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 6.240e-23
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 0

Query:    2 DDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            +DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  217 NDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 317

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.540e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  463 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEK 562

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.680e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  653 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 752

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BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.730e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  364 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 463

[Close]

BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.740e-23
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query:    3 DVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-NEGKKPLREPFIFSYKTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQE 101
            DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +   ++FS+KTNE G +V FKAR+VA G +QI  ID     +  PSAA++KTV+AVA ++
Sbjct:  505 DVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEK 604

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig25892.7057.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K282_9PHAE	2.380e-24	52.58	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KEA7_9PHAE	4.530e-24	52.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KPX2_9PHAE	8.380e-24	51.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5LAZ3_9PHAE	1.760e-23	48.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JNP9_9PHAE	3.470e-23	51.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KF18_9PHAE	6.240e-23	50.50	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K3C5_9PHAE	8.540e-23	51.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JGK7_9PHAE	8.680e-23	51.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K1I0_9PHAE	8.730e-23	51.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JI74_9PHAE	8.740e-23	51.00	Reverse transcriptase Ty1/copia-type domain-contai...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 29..101 e-value: 3.0E-13 score: 50.0
None	No IPR available	PANTHER	PTHR11439:SF265		coord: 12..97
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..97

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig25892	contig	H-paniculata_contig25892:72..380 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig25892.7057.1	mRNA_H-paniculata_contig25892.7057.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig25892 72..380 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig25892.7057.1 ID=prot_H-paniculata_contig25892.7057.1|Name=mRNA_H-paniculata_contig25892.7057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
IDDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDNEGKKPLREPFIFSY
KTNEMGNLVKFKARLVADGRTQIQDIDHDEVFAPTPSAAAVKTVLAVAVQ
ED*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like