mRNA_H-paniculata_contig2566.6986.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2566.6986.1
Unique NamemRNA_H-paniculata_contig2566.6986.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7G056_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G056_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 3.500e-65
Identity = 119/244 (48.77%), Postives = 170/244 (69.67%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLT--VNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNAL-----GVGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            V+VD+ PCILAS++VEKD+G VA AYLFN  +KGFW+A+Q++ +AP ++VLDL   ++ +HGKCNV+++GI+P+  Q+ QLQDYSRKF  R+VYFD AD      V  +LG Q NF +P +GAPRV+ T      G  A+S+  + + +D +Q +++ RP+   +     A ++ +A+YAD+ G+ +     GV    SAA+V Y G DGLEEM+VF +LAWFDT SW W H+I+ WGT+GIFQ
Sbjct:  604 VQVDMVPCILASESVEKDVGPVASAYLFNEFYKGFWTATQNV-QAPPAAVLDLVEALDADHGKCNVVYVGIVPSAAQKQQLQDYSRKFNVRIVYFDAADTILDTEVQARLGMQSNFDQPFVGAPRVKRT------GGSADSIAPADMLTDPSQNNLFNRPVVT-TVDTLPAGVSIMAQYADENGDVIAGVLAGVTNPESAAIVEYIGTDGLEEMHVFVSLAWFDTGSWAWGHFISEWGTRGIFQ 839          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: A0A6H5K3S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S3_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 4.600e-55
Identity = 109/241 (45.23%), Postives = 155/241 (64.32%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPM---TQFSTGDATAVITRVAEYADDKG-NALGVGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            V VDLQPCILA   + +D G   DAY+ +  +KG+W A Q  +   G+S  +LT +   GKCNV+++GI  T+ Q++QLQDYSR FK R+VYF+ A+ AN   V ++LG  Q+F EP++ AP + L    AT GA    VV S+L ++  +F+++ RP+      +TG+ TA +  +AEY DD G N     + PS A + Y  NDG EE+++FF++AWFDT SW WAH+   WGTKG+FQ
Sbjct:   36 VTVDLQPCILAPSKITQDNGDTPDAYVTSTFYKGYWGAKQ--VTLTGTS--ELTNSLTSGKCNVVYVGIPVTEAQKVQLQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIAL----ATGGAAVARVVPSTLVTNPREFNIFTRPVLVTNLATTGNGTATV--MAEYVDDSGANVPSSLSFPSVAAMAYASNDGYEELHLFFSVAWFDTGSWAWAHFFIEWGTKGVFQ 266          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: A0A6H5K730_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K730_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.770e-43
Identity = 106/259 (40.93%), Postives = 149/259 (57.53%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNE---NHGKCNVIFIGIIPT------DTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPMTQFSTGDATA-VITRVAEYADDKGNAL----GVGTAPSA--------ALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            ++VDL+PCI+    +E+D+  V++AYL + LFKGFW+ASQH+I   G    DL +N+   NHGKC+ IFIG  P+        Q  QL  YS KF+ RLV+FD A+ AN A + TK+G QQ F + ++ A  ++L    A        VV  +L +D ++  ++ RP+    +GD T    T VA+  D  G ++    G+    S         A VT+ G DG EEM+VFFA+AWF   SW WAHYI  W T+G+FQ
Sbjct:   27 IKVDLRPCIITKAAIEQDVSTVSEAYLLSELFKGFWAASQHVIIDTGDGDFDL-LNDGDGNHGKCSAIFIGSQPSVGEDGATAQYEQLLAYSAKFQVRLVFFDNAETANLATITTKIGIQQYFSDTLLAAAGIRLKDSDAR-------VVNPALQTDPSE--IFFRPVRV--SGDPTGGERTIVADLVDSDGQSISDTDGIWDPSSTMETPGASMAAVTFKGEDGSEEMHVFFAMAWFHMESWAWAHYIMEWATQGVFQ 273          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7G022_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G022_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.470e-41
Identity = 97/242 (40.08%), Postives = 130/242 (53.72%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNALG-----VGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            V+VD+ PCILAS+ VEKD G VA AYLFN  FKGFW+A+Q                                                R+VYFD+AD      V  +LG Q NF +P +GAPRV+ T      G   +S+  + + +D TQ +++ RP+   +     A ++ +A+YADD G+A+G     V    SAA+V Y G DGLEEM+VF +LAWFDT SW W H+I+ WGT+GIFQ
Sbjct:  639 VQVDMVPCILASEAVEKDAGPVASAYLFNEFFKGFWTATQ-----------------------------------------------VRIVYFDIADTILDTEVQARLGMQSNFDQPFVGAPRVKRT------GGSTDSIAPADMLTDPTQNNLFNRPVVT-TVDTLPAGVSILAQYADDNGDAIGGVLAGVTNPQSAAIVEYIGADGLEEMHVFISLAWFDTGSWAWGHFISEWGTRGIFQ 826          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D8LD69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD69_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.780e-30
Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGA 675
            V VDLQPCILA  T+ +D G   DAY+ +  ++G+W A+Q  + + G+S  DLT +   GKCNV+++GI  T+ Q+++LQDYSR FK R+VYF+ A+ AN   V ++LG  Q+F EP++ AP + L +++    A
Sbjct:   23 VTVDLQPCILAPSTITQDNGDTPDAYVTSTFYQGYWGATQ--LTSTGTS--DLTNSGTSGKCNVVYVGIPVTEAQKLELQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIALASESRKHAA 153          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.200e-28
Identity = 84/247 (34.01%), Postives = 127/247 (51.42%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSA-SQHIIEAPGSSVLDLTVNEN----HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKS--SLFSDRTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            V VDL PC+ +S  VEK        Y+ +  FKG+WS  ++  + +    +  L V+ +    HGKCN +++G  P+  Q   L  YS +FK RLVYF  A    TA   TKLG Q  F   ++    VQL+   +T  ++     K+  +LF+      +++ P+      +    +  +A+YAD  G     G A    +AA+++YTG DG EE++VF  + WFD  +W WAH+   W TKGIF 
Sbjct:  381 VLVDLVPCLFSSVAVEKSNENNPALYIMSLFFKGYWSPRTEEYVVSETDDLTALLVDSSDTTPHGKCNAVYVGYAPSTDQVAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGIQTYFAGDIVTPAFVQLSDLGSTKVSITQPGFKTDPNLFTPA----LFSYPVIMNEVPETGIEV--LAQYADSAGEPYLSGAAGDQENAAILSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 621          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 6.770e-28
Identity = 85/250 (34.00%), Postives = 124/250 (49.60%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWS--ASQHIIEAPGSSVLDLTVNEN------HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFD--MWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            V VDL PC+ +S  V +        Y+ +  FKG+WS    +H+++  G  +  L V+ +      HGKCN +++G  P+  Q   L  YS +FK RLVYF  A    TA   TKLG Q  F   +     VQL+      G    S+ K    +D   F   +++ P+   +  D    +  +A+Y D        G A    +AA+++YTG DG EE++VFF + WFD  +W WAH+   W TKGIF 
Sbjct:   76 VLVDLVPCLFSSVAVGESNENNPALYIMSLFFKGYWSPKTEEHVVK-EGDDLTALLVDSSDTSEVPHGKCNAVYVGYAPSTDQAAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGVQTYFAGDITTPAFVQLS----DLGGEKVSITKPGFKTDPNLFTPALFSYPVIINTVPDDGIEV--LAQYVDGDSEPYLSGAAGDQENAAMLSYTGADGHEELHVFFTIGWFDAGAWPWAHFFNEWATKGIFM 318          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.680e-26
Identity = 83/250 (33.20%), Postives = 125/250 (50.00%), Query Frame = 1
Query:  262 TNVVEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSA-SQHIIEAPGSSVLDLTVNEN----HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFD--MWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            T  V VDL PC+L++  + +        Y+ +  FKG+WS  ++  + +    +  L V+      HGKCN ++IG  P+  Q   L  YS ++K RLVY   A    TA   TKLG Q  F   +M    VQL+A     G    S+ +    +D   F   +++ P+   +  +A   +  +A+Y D  G     G A    +AA+++YTG DG EE++VF  + WFD  +W WAH+   W TKGIF 
Sbjct:  275 TGDVLVDLVPCLLSTVAIGESTNP--GLYVMSLFFKGYWSPKTEEFVVSDTDDLTALLVDSTDATPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYLPSALTHTTAEFTTKLGIQTYFAGDIMTPAYVQLSA----LGDEKVSITQPGFQTDPNLFTPALFSYPVIINAVPEAGIEV--LAQYVDSAGEPYLSGAAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 516          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ1_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.890e-24
Identity = 80/255 (31.37%), Postives = 119/255 (46.67%), Query Frame = 1
Query:  271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSA-SQHIIEAPGSSVLDLTVNEN------HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALAN-------SVVKSSLFSD----RTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            V VDL PC+ +S  V +        Y+ +  FKG+WS  ++  + +    +  L V+        HGKCN ++IG  P+  Q   L  YS ++K RLVYF  A    T +  TKLG Q  F   ++    VQL+   A    +         +VV  +LFS      T  +     + Q+   D+   ++  A            G   +AA+++YTG DG EE++VF  + WFD  +W WAH+   W TKGIF 
Sbjct:   96 VLVDLVPCLFSSLAVGESNENNPALYIMSLFFKGYWSPKTEEYVVSETDDLSALLVDSTDTSGVPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYFPSALTHTTESFTTKLGIQTYFAGDIVTPAFVQLSDLGAEKVTITQPGFKTDPNVVTPALFSYPVIVNTVPEEGIEVLAQYVDSDSEPYLSGAA------------GDQENAAMLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 338          
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 5.150e-23
Identity = 73/222 (32.88%), Postives = 112/222 (50.45%), Query Frame = 1
Query:  346 YLFNNLFKGFWS--ASQHIIEAPG---SSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFD--MWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
            Y+ +  FKG+WS    ++++       + ++D T    HG CN ++IG  P+ +Q   L  YS +FK RLVYF  A    TA    KLG Q  F   +     VQL+      G+   S+ +    +D   F   +++ P+   +      V+  +A+Y D  G+    G A    +AA+++YTG DG EE++VF  + WFD  +W WAH+   W TKGIF 
Sbjct:  302 YIMSLFFKGYWSPKTEEYVVSETDDLTALLVDSTDATPHGLCNAVYIGYAPSTSQVAALTAYSAQFKVRLVYFPSALTHTTAEFTAKLGIQTYFAGDITTPAFVQLS----DLGSTKVSITQPGFQTDPNLFSPPLFSYPVI-INAVPEEGVVEVLAQYVDSAGDPYLSGFAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 518          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G056_ECTSI3.500e-6548.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K3S3_9PHAE4.600e-5545.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K730_9PHAE2.770e-4340.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G022_ECTSI3.470e-4140.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LD69_ECTSI2.780e-3044.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLI8_ECTSI1.200e-2834.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLI7_ECTSI6.770e-2834.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLJ3_ECTSI3.680e-2633.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLJ1_ECTSI5.890e-2431.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JPQ4_9PHAE5.150e-2332.88WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2566contigH-paniculata_contig2566:4810..8027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue6.8e-59
Seed eggNOG ortholog2880.D7G056
Hectar predicted targeting categoryother localisation
EggNOG OGs28IRF@1,2QR2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size991
Cds size990
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929759.278589-CDS-H-paniculata_contig2566:4809..48991622929759.278589-CDS-H-paniculata_contig2566:4809..4899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 4810..4899 +
1691480998.7796566-CDS-H-paniculata_contig2566:4809..48991691480998.7796566-CDS-H-paniculata_contig2566:4809..4899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 4810..4899 +
1622929759.3025482-CDS-H-paniculata_contig2566:5228..52581622929759.3025482-CDS-H-paniculata_contig2566:5228..5258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 5229..5258 +
1691480998.794874-CDS-H-paniculata_contig2566:5228..52581691480998.794874-CDS-H-paniculata_contig2566:5228..5258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 5229..5258 +
1622929759.3266692-CDS-H-paniculata_contig2566:5464..56031622929759.3266692-CDS-H-paniculata_contig2566:5464..5603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 5465..5603 +
1691480998.8037856-CDS-H-paniculata_contig2566:5464..56031691480998.8037856-CDS-H-paniculata_contig2566:5464..5603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 5465..5603 +
1622929759.3547232-CDS-H-paniculata_contig2566:6113..61691622929759.3547232-CDS-H-paniculata_contig2566:6113..6169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 6114..6169 +
1691480998.8133628-CDS-H-paniculata_contig2566:6113..61691691480998.8133628-CDS-H-paniculata_contig2566:6113..6169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 6114..6169 +
1622929759.388615-CDS-H-paniculata_contig2566:6493..65681622929759.388615-CDS-H-paniculata_contig2566:6493..6568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 6494..6568 +
1691480998.823601-CDS-H-paniculata_contig2566:6493..65681691480998.823601-CDS-H-paniculata_contig2566:6493..6568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 6494..6568 +
1622929759.40127-CDS-H-paniculata_contig2566:6811..69521622929759.40127-CDS-H-paniculata_contig2566:6811..6952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 6812..6952 +
1691480998.8335752-CDS-H-paniculata_contig2566:6811..69521691480998.8335752-CDS-H-paniculata_contig2566:6811..6952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 6812..6952 +
1622929759.4798732-CDS-H-paniculata_contig2566:7166..72871622929759.4798732-CDS-H-paniculata_contig2566:7166..7287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 7167..7287 +
1691480998.8436701-CDS-H-paniculata_contig2566:7166..72871691480998.8436701-CDS-H-paniculata_contig2566:7166..7287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 7167..7287 +
1622929759.4953513-CDS-H-paniculata_contig2566:7512..76571622929759.4953513-CDS-H-paniculata_contig2566:7512..7657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 7513..7657 +
1691480998.8539183-CDS-H-paniculata_contig2566:7512..76571691480998.8539183-CDS-H-paniculata_contig2566:7512..7657Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 7513..7657 +
1622929759.5186937-CDS-H-paniculata_contig2566:7834..80271622929759.5186937-CDS-H-paniculata_contig2566:7834..8027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 7835..8027 +
1691480998.864314-CDS-H-paniculata_contig2566:7834..80271691480998.864314-CDS-H-paniculata_contig2566:7834..8027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2566 7835..8027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2566.6986.1prot_H-paniculata_contig2566.6986.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2566 4810..8027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2566.6986.1

>prot_H-paniculata_contig2566.6986.1 ID=prot_H-paniculata_contig2566.6986.1|Name=mRNA_H-paniculata_contig2566.6986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp
ATVWTNKTFTFTTATPNNYIELGTGVLEMLLRMHTITTDQTGRIDYASIT
TTGISFCGTAYACTPGSILDPTATCVDGCDNTECCKPTNVVEVDLQPCIL
ASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNENHG
KCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGF
QQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPMT
QFSTGDATAVITRVAEYADDKGNALGVGTAPSAALVTYTGNDGLEEMYVF
FALAWFDTYSWGWAHYIAGWGTKGIFQVY*
back to top

mRNA from alignment at H-paniculata_contig2566:4810..8027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2566.6986.1 ID=mRNA_H-paniculata_contig2566.6986.1|Name=mRNA_H-paniculata_contig2566.6986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3218bp|location=Sequence derived from alignment at H-paniculata_contig2566:4810..8027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACTGTGTGGACCAATAAGACATTCACCTTCACGACTGCCACGCCGAA CAACTATATTGAACTAGGAACTGGAGTTCTGGAAATGCTGGTGAGTACGT ATTTAACGGATTTGGGCGTGCAGCCGTTTCTCTCCTCGCAGCACCTAGCG GCACATGCTAACCGTCAGAAGCTATTCCAACATATAGAAGGCACATTTGC ATATAAACCACAGGTATGTGATGGACCACGGAAATTTCTTCTTGGATTTG GCGTTGTTCTTCTGCCACGAGACCATAAAGTAACAGCCAATGAAAAATTG AAATAGTAAGAAATACCCTGCTCAATTTATCTGACCCCTTGGCCTGAATC TACACTCTCTGCCATCCTTTGTATCGTCCTCGTTCCTGCTACGATTCTGC CATCGACGCGGCGCATCAGCTTCGGATGCACACCATCACTACTGACCAGG TGAGGGCATTCGTCTATCGGCAGACCCTCTGTCTCGAGACGACGATCTCC ATTATATTTTATCAACATGAATTTCACTGCTGCGCTTCTGGGTGATGTCA ATAGTCCGAAAGCGATCGACTCTACTCAAGCAACTCCCTCTGTTTCCCAA CAAGTTTGCCTGTCTGTCTATTTGTATATTTCGTTCATTTCTCGCCAAAC GCCAGACTGGGCGGATCGACTACGCATCGATCACCACCACAGGTATTTCC TTTTGCGGAACTGCGTACGCCTGCACACCAGGGTCAATCCTTGATCCTAC AGCGACCTGCGTTGATGGTTGCGACAACACCGAGTGCTGCAAGCGTGAGT GTACCTGCATAGTAGATGAACGTTTAAGCACATTCTGCTCCACATCGTTC ACCATTGGCTACACATTATGCACGAACAACTAGTTTTCGGAAGGTCTCTC CAGTATATACGGGGTATGAAGGTACTGCAGTCATAGAAATCCTCTGGGTT GCTCCAACTGGATGGAAAGTAATTGACCATCATGTCGCTGGCAAGGAGAT CGTATTTTGCTTTTGTTAGCTCTTGGTCTTTTTTTCTTATATCATGGAAA ACACTTTTTGTTTTATGCAGACTTTTAACTTTTTTTATCGGTTGTCTTGG TGGGTTAGGTGAAACTAAAATTAAAAAGAATTCTTGCTTTTAGTGGGATT GGTCATGTTGGTTTACTCCCGTGGTTTACTTTTATTTTACTCGCCCGTTC AGCAGACATAATTGTACAACCTGCGAGGGATAAAGGTGAATCTGCATACC ATATGTGAATGACCAACCAGTACTCTTTGCCCTCTGCCTTGGTTTACTCC GCAGCGACAAATGTGGTGGAGGTGGACCTACAGCCATGCATCCTGGCCAG CCAGACTGTTGTAAGTGTAGGGACATGTAGCCCGCCCGTCTAGTGGGAAT AGGCGTTTAACTTTACAAGTAAAGCATTGACGCGAAGCGGTATTGCAGCG CAACAATGTTTTTGATTGAGCAGCACTATGCCGGGTCAAAAAGGGGTGCA TCACCGACGAAAATCCACGCTGCAACCCCAGGAAAATACGTCTTGTGGTT GAATTAGATGCGGTCAAAAAACGAGATGGACTTTAAAACGCCTTTGGCGA GCAATGTGTGCTAATTCCGGAAACACGTTTCATCGTATCACGAATAATTC ACACACAATTTTTTCCATCGCACGTCCCGCGCAGGAGAAGGATATAGGTG CTGTGGCGGACGCTTACCTGTTCAACAACCTCTTCAAGGGCTTCTGGTCT GCGTCTCAGGTGCAGTTTTTAGATCGATTCAAGAGTTATGGCAGCGCGAA GCGGGAATTTACACTGCATTTTCGGGCGAGCAACAAATATCCTTGACTTC GATATTCCCTCTGCAATCGGATAGCCAGCTCCCGATGAAACAAATTCATG CACTTTTCCCGAGCTCATCCTTTCTATCGCGATGATTCCCATCCTGCCTG ATCGAATAAGTGCTTTACCGCTGTTGTCATTATCGGCGTTGTTGACGTGC AGCACATCATCGAGGCACCGGGGTCTTCAGTACTAGACCTGACCGTCAAT GAAAACCACGGCAAGTGCAACGTGATCTTCATCGGCATCATACCGACCGA TACTCAGAGAATTCAGCTGCAGGACTACTCGCGCAAATTCAAGGTATTCT GCCGGACATGACCATGAAATAATGATACATTTGCGCAGAAACCGCGAAAG AGAGAACACAGGGACCATAAAATAAGTAGTGTATTTGCTGTACATATAGA GCGCATGATGTGATTCGTTCGACGTCTAGAGTAAAGGCGTCGCCATGCGT GGCGAATTAAACCCAATAATAGCCCAGCTCACAATCGGTGTACCTGAAAA ATGACAGGCGCGTTTGGTGTACTTCGACGTAGCGGACGGGGCCAATACTG CCGCCGTTGTGACTAAACTGGGCTTCCAGCAGAACTTCGTGGAACCTGTG ATGGGTGCTCCCAGGGTCCAGCTCACAGGTGAAAAGTATGCCGGGGGGCG AGCAGAATGTAGAGATAGGCGCTCCTGGCGGTGGGTGTGATGGTTGGAAC AGAGTTTAGTAGTATTATCGAAAATTCGTTGTGGCTGAACGAAAGCTGTT GCTACCAGGTCACCCTGCTAGCAAATCTCTCACACTAGTGCCGTCCTGCC CCCACATATCCGTCTGTTGCCTATGCCGTTTCGCTACCTCAAATGAATTA CAGCTGATGCTGCTACCAGTGGTGCTTTGGCCAACAGCGTGGTTAAATCC AGTCTTTTCAGTGACAGAACGCAGTTCGACATGTGGGCCAGGCCGATGAC CCAATTCAGCACGGGCGACGCTACTGCCGTGATCACTCGCGTCGCCGAGT GAGTATTTTCCCGGTTCTTCTTTGTGCCACCGTAAACTCACGATATCGCA TAGCGTATTCTTCAGACCTTGACGACTTCGGATAGTTACTCCAAACATCG CTTTTTGAAAGCGAGGTATCCGTTCACATATTCACGGTCATGACGCGTCC CTGCCCGAATACCCCTTTCGACCAGGTATGCCGATGACAAAGGTAACGCG TTGGGTGTTGGTACCGCTCCCTCAGCTGCTCTCGTAACCTACACGGGCAA CGACGGTCTCGAAGAGATGTATGTGTTCTTCGCCCTGGCGTGGTTCGACA CGTACTCTTGGGGATGGGCGCACTACATCGCCGGGTGGGGAACGAAGGGC ATTTTCCAGGTATATTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2566:4810..8027+

>mRNA_H-paniculata_contig2566.6986.1 ID=mRNA_H-paniculata_contig2566.6986.1|Name=mRNA_H-paniculata_contig2566.6986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig2566:4810..8027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACTGTGTGGACCAATAAGACATTCACCTTCACGACTGCCACGCCGAA
CAACTATATTGAACTAGGAACTGGAGTTCTGGAAATGCTGGCGACTGTGT
GGACCAATAAGACATTCACCTTCACGACTGCCACGCCGAACAACTATATT
GAACTAGGAACTGGAGTTCTGGAAATGCTGCTTCGGATGCACACCATCAC
TACTGACCAGCTTCGGATGCACACCATCACTACTGACCAGACTGGGCGGA
TCGACTACGCATCGATCACCACCACAGGTATTTCCTTTTGCGGAACTGCG
TACGCCTGCACACCAGGGTCAATCCTTGATCCTACAGCGACCTGCGTTGA
TGGTTGCGACAACACCGAGTGCTGCAAGCACTGGGCGGATCGACTACGCA
TCGATCACCACCACAGGTATTTCCTTTTGCGGAACTGCGTACGCCTGCAC
ACCAGGGTCAATCCTTGATCCTACAGCGACCTGCGTTGATGGTTGCGACA
ACACCGAGTGCTGCAAGCCGACAAATGTGGTGGAGGTGGACCTACAGCCA
TGCATCCTGGCCAGCCAGACTGTTCGACAAATGTGGTGGAGGTGGACCTA
CAGCCATGCATCCTGGCCAGCCAGACTGTTGAGAAGGATATAGGTGCTGT
GGCGGACGCTTACCTGTTCAACAACCTCTTCAAGGGCTTCTGGTCTGCGT
CTCAGGAGAAGGATATAGGTGCTGTGGCGGACGCTTACCTGTTCAACAAC
CTCTTCAAGGGCTTCTGGTCTGCGTCTCAGCACATCATCGAGGCACCGGG
GTCTTCAGTACTAGACCTGACCGTCAATGAAAACCACGGCAAGTGCAACG
TGATCTTCATCGGCATCATACCGACCGATACTCAGAGAATTCAGCTGCAG
GACTACTCGCGCAAATTCAAGCACATCATCGAGGCACCGGGGTCTTCAGT
ACTAGACCTGACCGTCAATGAAAACCACGGCAAGTGCAACGTGATCTTCA
TCGGCATCATACCGACCGATACTCAGAGAATTCAGCTGCAGGACTACTCG
CGCAAATTCAAGGCGCGTTTGGTGTACTTCGACGTAGCGGACGGGGCCAA
TACTGCCGCCGTTGTGACTAAACTGGGCTTCCAGCAGAACTTCGTGGAAC
CTGTGATGGGTGCTCCCAGGGTCCAGCTCACAGGCGCGTTTGGTGTACTT
CGACGTAGCGGACGGGGCCAATACTGCCGCCGTTGTGACTAAACTGGGCT
TCCAGCAGAACTTCGTGGAACCTGTGATGGGTGCTCCCAGGGTCCAGCTC
ACAGCTGATGCTGCTACCAGTGGTGCTTTGGCCAACAGCGTGGTTAAATC
CAGTCTTTTCAGTGACAGAACGCAGTTCGACATGTGGGCCAGGCCGATGA
CCCAATTCAGCACGGGCGACGCTACTGCCGTGATCACTCGCGTCGCCGAC
TGATGCTGCTACCAGTGGTGCTTTGGCCAACAGCGTGGTTAAATCCAGTC
TTTTCAGTGACAGAACGCAGTTCGACATGTGGGCCAGGCCGATGACCCAA
TTCAGCACGGGCGACGCTACTGCCGTGATCACTCGCGTCGCCGAGTATGC
CGATGACAAAGGTAACGCGTTGGGTGTTGGTACCGCTCCCTCAGCTGCTC
TCGTAACCTACACGGGCAACGACGGTCTCGAAGAGATGTATGTGTTCTTC
GCCCTGGCGTGGTTCGACACGTACTCTTGGGGATGGGCGCACTACATCGC
CGGGTGGGGAACGAAGGGCATTTTCCAGGTATATTAAGTATGCCGATGAC
AAAGGTAACGCGTTGGGTGTTGGTACCGCTCCCTCAGCTGCTCTCGTAAC
CTACACGGGCAACGACGGTCTCGAAGAGATGTATGTGTTCTTCGCCCTGG
CGTGGTTCGACACGTACTCTTGGGGATGGGCGCACTACATCGCCGGGTGG
GGAACGAAGGGCATTTTCCAGGTATATTAA
back to top