mRNA_H-paniculata_contig2566.6986.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7G056_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G056_ECTSI) HSP 1 Score: 233 bits (593), Expect = 3.500e-65 Identity = 119/244 (48.77%), Postives = 170/244 (69.67%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLT--VNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNAL-----GVGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
V+VD+ PCILAS++VEKD+G VA AYLFN +KGFW+A+Q++ +AP ++VLDL ++ +HGKCNV+++GI+P+ Q+ QLQDYSRKF R+VYFD AD V +LG Q NF +P +GAPRV+ T G A+S+ + + +D +Q +++ RP+ + A ++ +A+YAD+ G+ + GV SAA+V Y G DGLEEM+VF +LAWFDT SW W H+I+ WGT+GIFQ
Sbjct: 604 VQVDMVPCILASESVEKDVGPVASAYLFNEFYKGFWTATQNV-QAPPAAVLDLVEALDADHGKCNVVYVGIVPSAAQKQQLQDYSRKFNVRIVYFDAADTILDTEVQARLGMQSNFDQPFVGAPRVKRT------GGSADSIAPADMLTDPSQNNLFNRPVVT-TVDTLPAGVSIMAQYADENGDVIAGVLAGVTNPESAAIVEYIGTDGLEEMHVFVSLAWFDTGSWAWGHFISEWGTRGIFQ 839
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: A0A6H5K3S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S3_9PHAE) HSP 1 Score: 202 bits (513), Expect = 4.600e-55 Identity = 109/241 (45.23%), Postives = 155/241 (64.32%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPM---TQFSTGDATAVITRVAEYADDKG-NALGVGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
V VDLQPCILA + +D G DAY+ + +KG+W A Q + G+S +LT + GKCNV+++GI T+ Q++QLQDYSR FK R+VYF+ A+ AN V ++LG Q+F EP++ AP + L AT GA VV S+L ++ +F+++ RP+ +TG+ TA + +AEY DD G N + PS A + Y NDG EE+++FF++AWFDT SW WAH+ WGTKG+FQ
Sbjct: 36 VTVDLQPCILAPSKITQDNGDTPDAYVTSTFYKGYWGAKQ--VTLTGTS--ELTNSLTSGKCNVVYVGIPVTEAQKVQLQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIAL----ATGGAAVARVVPSTLVTNPREFNIFTRPVLVTNLATTGNGTATV--MAEYVDDSGANVPSSLSFPSVAAMAYASNDGYEELHLFFSVAWFDTGSWAWAHFFIEWGTKGVFQ 266
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: A0A6H5K730_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K730_9PHAE) HSP 1 Score: 169 bits (427), Expect = 2.770e-43 Identity = 106/259 (40.93%), Postives = 149/259 (57.53%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNE---NHGKCNVIFIGIIPT------DTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPMTQFSTGDATA-VITRVAEYADDKGNAL----GVGTAPSA--------ALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
++VDL+PCI+ +E+D+ V++AYL + LFKGFW+ASQH+I G DL +N+ NHGKC+ IFIG P+ Q QL YS KF+ RLV+FD A+ AN A + TK+G QQ F + ++ A ++L A VV +L +D ++ ++ RP+ +GD T T VA+ D G ++ G+ S A VT+ G DG EEM+VFFA+AWF SW WAHYI W T+G+FQ
Sbjct: 27 IKVDLRPCIITKAAIEQDVSTVSEAYLLSELFKGFWAASQHVIIDTGDGDFDL-LNDGDGNHGKCSAIFIGSQPSVGEDGATAQYEQLLAYSAKFQVRLVFFDNAETANLATITTKIGIQQYFSDTLLAAAGIRLKDSDAR-------VVNPALQTDPSE--IFFRPVRV--SGDPTGGERTIVADLVDSDGQSISDTDGIWDPSSTMETPGASMAAVTFKGEDGSEEMHVFFAMAWFHMESWAWAHYIMEWATQGVFQ 273
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7G022_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G022_ECTSI) HSP 1 Score: 163 bits (413), Expect = 3.470e-41 Identity = 97/242 (40.08%), Postives = 130/242 (53.72%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNALG-----VGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
V+VD+ PCILAS+ VEKD G VA AYLFN FKGFW+A+Q R+VYFD+AD V +LG Q NF +P +GAPRV+ T G +S+ + + +D TQ +++ RP+ + A ++ +A+YADD G+A+G V SAA+V Y G DGLEEM+VF +LAWFDT SW W H+I+ WGT+GIFQ
Sbjct: 639 VQVDMVPCILASEAVEKDAGPVASAYLFNEFFKGFWTATQ-----------------------------------------------VRIVYFDIADTILDTEVQARLGMQSNFDQPFVGAPRVKRT------GGSTDSIAPADMLTDPTQNNLFNRPVVT-TVDTLPAGVSILAQYADDNGDAIGGVLAGVTNPQSAAIVEYIGADGLEEMHVFISLAWFDTGSWAWGHFISEWGTRGIFQ 826
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D8LD69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD69_ECTSI) HSP 1 Score: 122 bits (305), Expect = 2.780e-30 Identity = 60/135 (44.44%), Postives = 91/135 (67.41%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSASQHIIEAPGSSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGA 675
V VDLQPCILA T+ +D G DAY+ + ++G+W A+Q + + G+S DLT + GKCNV+++GI T+ Q+++LQDYSR FK R+VYF+ A+ AN V ++LG Q+F EP++ AP + L +++ A
Sbjct: 23 VTVDLQPCILAPSTITQDNGDTPDAYVTSTFYQGYWGATQ--LTSTGTS--DLTNSGTSGKCNVVYVGIPVTEAQKLELQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIALASESRKHAA 153
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.200e-28 Identity = 84/247 (34.01%), Postives = 127/247 (51.42%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSA-SQHIIEAPGSSVLDLTVNEN----HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKS--SLFSDRTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
V VDL PC+ +S VEK Y+ + FKG+WS ++ + + + L V+ + HGKCN +++G P+ Q L YS +FK RLVYF A TA TKLG Q F ++ VQL+ +T ++ K+ +LF+ +++ P+ + + +A+YAD G G A +AA+++YTG DG EE++VF + WFD +W WAH+ W TKGIF
Sbjct: 381 VLVDLVPCLFSSVAVEKSNENNPALYIMSLFFKGYWSPRTEEYVVSETDDLTALLVDSSDTTPHGKCNAVYVGYAPSTDQVAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGIQTYFAGDIVTPAFVQLSDLGSTKVSITQPGFKTDPNLFTPA----LFSYPVIMNEVPETGIEV--LAQYADSAGEPYLSGAAGDQENAAILSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 621
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI) HSP 1 Score: 124 bits (312), Expect = 6.770e-28 Identity = 85/250 (34.00%), Postives = 124/250 (49.60%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWS--ASQHIIEAPGSSVLDLTVNEN------HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFD--MWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
V VDL PC+ +S V + Y+ + FKG+WS +H+++ G + L V+ + HGKCN +++G P+ Q L YS +FK RLVYF A TA TKLG Q F + VQL+ G S+ K +D F +++ P+ + D + +A+Y D G A +AA+++YTG DG EE++VFF + WFD +W WAH+ W TKGIF
Sbjct: 76 VLVDLVPCLFSSVAVGESNENNPALYIMSLFFKGYWSPKTEEHVVK-EGDDLTALLVDSSDTSEVPHGKCNAVYVGYAPSTDQAAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGVQTYFAGDITTPAFVQLS----DLGGEKVSITKPGFKTDPNLFTPALFSYPVIINTVPDDGIEV--LAQYVDGDSEPYLSGAAGDQENAAMLSYTGADGHEELHVFFTIGWFDAGAWPWAHFFNEWATKGIFM 318
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ3_ECTSI) HSP 1 Score: 119 bits (299), Expect = 3.680e-26 Identity = 83/250 (33.20%), Postives = 125/250 (50.00%), Query Frame = 1
Query: 262 TNVVEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSA-SQHIIEAPGSSVLDLTVNEN----HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFD--MWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
T V VDL PC+L++ + + Y+ + FKG+WS ++ + + + L V+ HGKCN ++IG P+ Q L YS ++K RLVY A TA TKLG Q F +M VQL+A G S+ + +D F +++ P+ + +A + +A+Y D G G A +AA+++YTG DG EE++VF + WFD +W WAH+ W TKGIF
Sbjct: 275 TGDVLVDLVPCLLSTVAIGESTNP--GLYVMSLFFKGYWSPKTEEFVVSDTDDLTALLVDSTDATPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYLPSALTHTTAEFTTKLGIQTYFAGDIMTPAYVQLSA----LGDEKVSITQPGFQTDPNLFTPALFSYPVIINAVPEAGIEV--LAQYVDSAGEPYLSGAAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 516
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: D7FLJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ1_ECTSI) HSP 1 Score: 113 bits (282), Expect = 5.890e-24 Identity = 80/255 (31.37%), Postives = 119/255 (46.67%), Query Frame = 1
Query: 271 VEVDLQPCILASQTVEKDIGAVADAYLFNNLFKGFWSA-SQHIIEAPGSSVLDLTVNEN------HGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALAN-------SVVKSSLFSD----RTQFDMWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTAPSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
V VDL PC+ +S V + Y+ + FKG+WS ++ + + + L V+ HGKCN ++IG P+ Q L YS ++K RLVYF A T + TKLG Q F ++ VQL+ A + +VV +LFS T + + Q+ D+ ++ A G +AA+++YTG DG EE++VF + WFD +W WAH+ W TKGIF
Sbjct: 96 VLVDLVPCLFSSLAVGESNENNPALYIMSLFFKGYWSPKTEEYVVSETDDLSALLVDSTDTSGVPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYFPSALTHTTESFTTKLGIQTYFAGDIVTPAFVQLSDLGAEKVTITQPGFKTDPNVVTPALFSYPVIVNTVPEEGIEVLAQYVDSDSEPYLSGAA------------GDQENAAMLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 338
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.150e-23 Identity = 73/222 (32.88%), Postives = 112/222 (50.45%), Query Frame = 1
Query: 346 YLFNNLFKGFWS--ASQHIIEAPG---SSVLDLTVNENHGKCNVIFIGIIPTDTQRIQLQDYSRKFKARLVYFDVADGANTAAVVTKLGFQQNFVEPVMGAPRVQLTADAATSGALANSVVKSSLFSDRTQFD--MWARPMTQFSTGDATAVITRVAEYADDKGNALGVGTA---PSAALVTYTGNDGLEEMYVFFALAWFDTYSWGWAHYIAGWGTKGIFQ 981
Y+ + FKG+WS ++++ + ++D T HG CN ++IG P+ +Q L YS +FK RLVYF A TA KLG Q F + VQL+ G+ S+ + +D F +++ P+ + V+ +A+Y D G+ G A +AA+++YTG DG EE++VF + WFD +W WAH+ W TKGIF
Sbjct: 302 YIMSLFFKGYWSPKTEEYVVSETDDLTALLVDSTDATPHGLCNAVYIGYAPSTSQVAALTAYSAQFKVRLVYFPSALTHTTAEFTAKLGIQTYFAGDITTPAFVQLS----DLGSTKVSITQPGFQTDPNLFSPPLFSYPVI-INAVPEEGVVEVLAQYVDSAGDPYLSGFAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIFM 518 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2566.6986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2566.6986.1 >prot_H-paniculata_contig2566.6986.1 ID=prot_H-paniculata_contig2566.6986.1|Name=mRNA_H-paniculata_contig2566.6986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp ATVWTNKTFTFTTATPNNYIELGTGVLEMLLRMHTITTDQTGRIDYASITback to top mRNA from alignment at H-paniculata_contig2566:4810..8027+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2566.6986.1 ID=mRNA_H-paniculata_contig2566.6986.1|Name=mRNA_H-paniculata_contig2566.6986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3218bp|location=Sequence derived from alignment at H-paniculata_contig2566:4810..8027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2566:4810..8027+ >mRNA_H-paniculata_contig2566.6986.1 ID=mRNA_H-paniculata_contig2566.6986.1|Name=mRNA_H-paniculata_contig2566.6986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig2566:4810..8027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |