mRNA_H-paniculata_contig25622.6978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25622.6978.1
Unique NamemRNA_H-paniculata_contig25622.6978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.770e-37
Identity = 69/124 (55.65%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   13 IVMMSTT-ADEAVSRYKNFVGNKKFEEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            IVM +T+  + +VSRYK  VG K++E  E  E+RA   F ++C VYGE+NA++MVK  P+CL YD ++F+ TFEAF E            RNPNLL VRP GFGGAANAKSDTM MSY+IA TR
Sbjct:   46 IVMQATSNVESSVSRYKKLVGAKRWETDEGIEKRAAGTFADMCKVYGEDNAVQMVKNSPSCLGYDGSVFQATFEAFTEXXXXXXXXXXXXRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATR 169          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A7S1UHZ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 9.550e-27
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   37 DEAVSRYKNFVGNKKF-EEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            ++A++ Y    GN K     +  E     CF E+ +VYGE+NA KMV AVP  L++D   F+ TF+ F E F  +  KGMV RNPNLL  +P G+GGA  AK DT  +SY++A TR
Sbjct:   55 EKALTTYNKAYGNAKTGSRYDLTEPELKKCFAELANVYGEDNASKMVNAVPGSLSFDPQYFKPTFDIFAETFGADKAKGMVVRNPNLLATKPDGWGGAGGAKEDTFYLSYVVAATR 170          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.720e-23
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   13 IVMMSTT-ADEAVSRYKNFVGNKKFEEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMV 276
            +VM +T+  + +V+RYK  VG K++E  E  E+RA   F E+C VYGE+NA++MVK  P+CL YD ++FR TFEAF EVF  E+TKG V
Sbjct:   46 VVMQATSNVESSVARYKKLVGAKRWETDEGIEKRAAGTFAEMCKVYGEDNAVQMVKNSPSCLGYDGSVFRATFEAFSEVFGEEETKGCV 134          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC)

HSP 1 Score: 86.7 bits (213), Expect = 1.010e-18
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   76 KKFEEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            K F + E  + R+T  F E+  +YGE+NA++MVK +   LA+    F  + EAF EVF  E++K MV +NP LL + P G GGA +    TM  SYL+ +TR
Sbjct:   52 KSFSDREEKDLRST--FKELARLYGEDNALQMVKDLTIVLAFKRNYFAPSLEAFSEVFGEEESKAMVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTR 151          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A1Z5JHY5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHY5_FISSO)

HSP 1 Score: 79.3 bits (194), Expect = 1.340e-15
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  100 AEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            +E++A + F E+  +YG++ A +MV  +P CL+++ T F+ + EA+ E+F  +    MV RNP LL V+P     AA     TMT SYL+A+TR
Sbjct:   97 SEKQARSAFQELAKLYGDDVAKQMVIDLPVCLSFERTWFKPSLEAYSEIFGKDKAMAMVARNPGLLAVKP---SDAATVTDQTMTFSYLVAYTR 187          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS)

HSP 1 Score: 78.6 bits (192), Expect = 2.490e-15
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  124 FNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            FN I  +YGEENA+KMVK  P  LA++   F  + +AF E F  E+ K MV RNP LL V+P     AA+A   TM MSY++ FTR
Sbjct:  104 FNTIVTLYGEENALKMVKIQPGVLAFNKDNFAPSLDAFGETFGLEEAKDMVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTR 186          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: K0RXR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXR5_THAOC)

HSP 1 Score: 72.0 bits (175), Expect = 3.440e-13
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  142 VYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            +YGEE A+ MVK +P  LA++      + + F + F  E++K MV RNP LLGV P+    A    S TM +SY+++FTR
Sbjct:   64 LYGEEEALAMVKILPQALAFNKDYMAPSLDGFSDAFGLEESKEMVMRNPGLLGVEPKD---AVTVTSSTMQLSYIVSFTR 140          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A1E7FJN0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJN0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.700e-11
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1
Query:  106 QRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            ++A   FNE+  +YG+E A+ MVK     L ++S  +     ++ E F  E  +GMV RNPNLL +RP     A     D M  SY+IA +R
Sbjct:   94 EKAIVAFNELARLYGDEEAVAMVKLESRVLVFNSDNYAPCLASWTEQFGLEAAQGMVGRNPNLLAIRPEL---AVKPAEDCMVFSYIIAASR 182          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A7S2GAC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAC3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.790e-10
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  124 FNEICDVYGEE-NAIKMVKAVPNCLAYDSTIFRETFEAF----CE----VFDPEDTKGMVTRNPNLLGVRPRGFGGA 327
            F  I  +YG E NA K+V+A P  L YDST F ET  AF    CE     +  +D   M+ RNPNL+ VRP G+GGA
Sbjct:  112 FQRIASLYGGEGNARKIVEAEPKVLGYDSTRFSETKAAFVTAMCEGEEAKYSEDDVVAMIMRNPNLIAVRPSGYGGA 188          
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A7S2LZT3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LZT3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.410e-9
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  109 RATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
            + ++ FNE+  +YG+E A+ MVK  P  L +D+  F    E++ E F  E  + MV RNP LLGV+P            +M  SY++A  R
Sbjct:   64 KLSSTFNELAKLYGDEEALGMVKIEPRVLRFDAENFEPCLESWTEQFGLEKAQAMVKRNPGLLGVKP----SLTEDADSSMYGSYVVAALR 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FYY7_ECTSI2.770e-3755.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UHZ5_9STRA9.550e-2745.69Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6H5KAE4_9PHAE4.720e-2352.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B7FNV7_PHATC1.010e-1843.14Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JHY5_FISSO1.340e-1540.43Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B5YMT8_THAPS2.490e-1550.00Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
K0RXR5_THAOC3.440e-1342.50Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1E7FJN0_9STRA8.700e-1138.04Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2GAC3_9STRA3.790e-1048.05Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2LZT3_9STRA1.410e-936.26Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25622contigH-paniculata_contig25622:2667..3508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue7.8e-29
Seed eggNOG ortholog2880.D7FYY7
Hectar predicted targeting categoryother localisation
EggNOG OGs2C1F6@1,2S9PY@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002980.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size381
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25622.6978.1prot_H-paniculata_contig25622.6978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25622 2685..3508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929758.071181-UTR-H-paniculata_contig25622:2666..26841622929758.071181-UTR-H-paniculata_contig25622:2666..2684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25622 2667..2684 +
1691480998.2859144-UTR-H-paniculata_contig25622:2666..26841691480998.2859144-UTR-H-paniculata_contig25622:2666..2684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25622 2667..2684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929758.0842257-CDS-H-paniculata_contig25622:2684..28371622929758.0842257-CDS-H-paniculata_contig25622:2684..2837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25622 2685..2837 +
1691480998.2976897-CDS-H-paniculata_contig25622:2684..28371691480998.2976897-CDS-H-paniculata_contig25622:2684..2837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25622 2685..2837 +
1622929758.0954244-CDS-H-paniculata_contig25622:3298..35081622929758.0954244-CDS-H-paniculata_contig25622:3298..3508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25622 3299..3508 +
1691480998.3069382-CDS-H-paniculata_contig25622:3298..35081691480998.3069382-CDS-H-paniculata_contig25622:3298..3508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25622 3299..3508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25622.6978.1

>prot_H-paniculata_contig25622.6978.1 ID=prot_H-paniculata_contig25622.6978.1|Name=mRNA_H-paniculata_contig25622.6978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MMSTTADEAVSRYKNFVGNKKFEEMENAEQRATTCFNEICDVYGEENAIK
MVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGF
GGAANAKSDTMTMSYLIAFTR
back to top

mRNA from alignment at H-paniculata_contig25622:2667..3508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25622.6978.1 ID=mRNA_H-paniculata_contig25622.6978.1|Name=mRNA_H-paniculata_contig25622.6978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at H-paniculata_contig25622:2667..3508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACTAGCTCAATCGTCATGATGAGCACCACAGCGGACGAGGCCGTCAG TCGGTACAAGAATTTCGTTGGCAATAAGAAATTCGAGGAGATGGAGAACG CAGAACAGAGAGCGACGACATGCTTCAACGAAATCTGCGACGTTTACGGG GAGGAAAACGCGATCAAGATGGTGCGTGATTTTTTACAAAACGTTTTTTT GCTTTCTTTTTGAAATTGCCGCCAGGGGTATTATACCAAAACGTCTAAAA TCGGAGCCACACCCCCTTGGAGTTACAATCTTTATTACATTATTTTAGAT TTGGAATATATGTCTAAAATTAGCGAAAGTATTTCTTCCCTCAATTGTGT CTTTACTTGATCAAAAAGAGGGCTCGAGAGGTTGGGGGGGTTCCGGGGGA GGGCTTCAAAATTGATTTTCGACTGCATGTACTTCTTGTTAACGCTTTTC ATTGAATACAATGAAATATATATGTAGGGCAAAAGGTTACGTCTGACTCG TAAAGAGCAGAACTACAAACTAACTTGAATAACATCAGCTTTGTTTTCAG TCGGTCATACATGTCAAATAGTTCACATATCGCGGGTGATCTTCCTGTTG TTGATTGTGCTTGATGTGACGTTTTGTATCAGGTGAAGGCGGTGCCGAAC TGCCTCGCTTACGATTCGACCATCTTCCGGGAGACTTTCGAGGCCTTCTG CGAGGTTTTCGACCCGGAGGACACAAAGGGAATGGTGACTCGCAACCCGA ACCTTCTCGGCGTTCGGCCTCGAGGGTTTGGTGGCGCGGCCAACGCGAAG AGTGACACCATGACAATGAGCTACCTTATCGCCTTTACAAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25622:2667..3508+

>mRNA_H-paniculata_contig25622.6978.1 ID=mRNA_H-paniculata_contig25622.6978.1|Name=mRNA_H-paniculata_contig25622.6978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig25622:2667..3508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAGCACCACAGCGGACGAGGCCGTCAGTCGGTACAAGAATTTCGT
TGGCAATAAGAAATTCGAGGAGATGGAGAACGCAGAACAGAGAGCGACGA
CATGCTTCAACGAAATCTGCGACGTTTACGGGGAGGAAAACGCGATCAAG
ATGATGATGAGCACCACAGCGGACGAGGCCGTCAGTCGGTACAAGAATTT
CGTTGGCAATAAGAAATTCGAGGAGATGGAGAACGCAGAACAGAGAGCGA
CGACATGCTTCAACGAAATCTGCGACGTTTACGGGGAGGAAAACGCGATC
AAGATGGTGAAGGCGGTGCCGAACTGCCTCGCTTACGATTCGACCATCTT
CCGGGAGACTTTCGAGGCCTTCTGCGAGGTTTTCGACCCGGAGGACACAA
AGGGAATGGTGACTCGCAACCCGAACCTTCTCGGCGTTCGGCCTCGAGGG
TTTGGTGGCGCGGCCAACGCGAAGAGTGACACCATGACAATGAGCTACCT
TATCGCCTTTACAAGGGTGAAGGCGGTGCCGAACTGCCTCGCTTACGATT
CGACCATCTTCCGGGAGACTTTCGAGGCCTTCTGCGAGGTTTTCGACCCG
GAGGACACAAAGGGAATGGTGACTCGCAACCCGAACCTTCTCGGCGTTCG
GCCTCGAGGGTTTGGTGGCGCGGCCAACGCGAAGAGTGACACCATGACAA
TGAGCTACCTTATCGCCTTTACAAGG
back to top