mRNA_H-paniculata_contig25622.6978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI) HSP 1 Score: 134 bits (338), Expect = 2.770e-37 Identity = 69/124 (55.65%), Postives = 86/124 (69.35%), Query Frame = 1
Query: 13 IVMMSTT-ADEAVSRYKNFVGNKKFEEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
IVM +T+ + +VSRYK VG K++E E E+RA F ++C VYGE+NA++MVK P+CL YD ++F+ TFEAF E RNPNLL VRP GFGGAANAKSDTM MSY+IA TR
Sbjct: 46 IVMQATSNVESSVSRYKKLVGAKRWETDEGIEKRAAGTFADMCKVYGEDNAVQMVKNSPSCLGYDGSVFQATFEAFTEXXXXXXXXXXXXRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATR 169
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A7S1UHZ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ5_9STRA) HSP 1 Score: 107 bits (268), Expect = 9.550e-27 Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 37 DEAVSRYKNFVGNKKF-EEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
++A++ Y GN K + E CF E+ +VYGE+NA KMV AVP L++D F+ TF+ F E F + KGMV RNPNLL +P G+GGA AK DT +SY++A TR
Sbjct: 55 EKALTTYNKAYGNAKTGSRYDLTEPELKKCFAELANVYGEDNASKMVNAVPGSLSFDPQYFKPTFDIFAETFGADKAKGMVVRNPNLLATKPDGWGGAGGAKEDTFYLSYVVAATR 170
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 4.720e-23 Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 13 IVMMSTT-ADEAVSRYKNFVGNKKFEEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMV 276
+VM +T+ + +V+RYK VG K++E E E+RA F E+C VYGE+NA++MVK P+CL YD ++FR TFEAF EVF E+TKG V
Sbjct: 46 VVMQATSNVESSVARYKKLVGAKRWETDEGIEKRAAGTFAEMCKVYGEDNAVQMVKNSPSCLGYDGSVFRATFEAFSEVFGEEETKGCV 134
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC) HSP 1 Score: 86.7 bits (213), Expect = 1.010e-18 Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 76 KKFEEMENAEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
K F + E + R+T F E+ +YGE+NA++MVK + LA+ F + EAF EVF E++K MV +NP LL + P G GGA + TM SYL+ +TR
Sbjct: 52 KSFSDREEKDLRST--FKELARLYGEDNALQMVKDLTIVLAFKRNYFAPSLEAFSEVFGEEESKAMVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTR 151
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A1Z5JHY5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHY5_FISSO) HSP 1 Score: 79.3 bits (194), Expect = 1.340e-15 Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 100 AEQRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
+E++A + F E+ +YG++ A +MV +P CL+++ T F+ + EA+ E+F + MV RNP LL V+P AA TMT SYL+A+TR
Sbjct: 97 SEKQARSAFQELAKLYGDDVAKQMVIDLPVCLSFERTWFKPSLEAYSEIFGKDKAMAMVARNPGLLAVKP---SDAATVTDQTMTFSYLVAYTR 187
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS) HSP 1 Score: 78.6 bits (192), Expect = 2.490e-15 Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1
Query: 124 FNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
FN I +YGEENA+KMVK P LA++ F + +AF E F E+ K MV RNP LL V+P AA+A TM MSY++ FTR
Sbjct: 104 FNTIVTLYGEENALKMVKIQPGVLAFNKDNFAPSLDAFGETFGLEEAKDMVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTR 186
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: K0RXR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXR5_THAOC) HSP 1 Score: 72.0 bits (175), Expect = 3.440e-13 Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 142 VYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
+YGEE A+ MVK +P LA++ + + F + F E++K MV RNP LLGV P+ A S TM +SY+++FTR
Sbjct: 64 LYGEEEALAMVKILPQALAFNKDYMAPSLDGFSDAFGLEESKEMVMRNPGLLGVEPKD---AVTVTSSTMQLSYIVSFTR 140
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A1E7FJN0_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJN0_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 8.700e-11 Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 1
Query: 106 QRATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
++A FNE+ +YG+E A+ MVK L ++S + ++ E F E +GMV RNPNLL +RP A D M SY+IA +R
Sbjct: 94 EKAIVAFNELARLYGDEEAVAMVKLESRVLVFNSDNYAPCLASWTEQFGLEAAQGMVGRNPNLLAIRPEL---AVKPAEDCMVFSYIIAASR 182
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A7S2GAC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAC3_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 3.790e-10 Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 124 FNEICDVYGEE-NAIKMVKAVPNCLAYDSTIFRETFEAF----CE----VFDPEDTKGMVTRNPNLLGVRPRGFGGA 327
F I +YG E NA K+V+A P L YDST F ET AF CE + +D M+ RNPNL+ VRP G+GGA
Sbjct: 112 FQRIASLYGGEGNARKIVEAEPKVLGYDSTRFSETKAAFVTAMCEGEEAKYSEDDVVAMIMRNPNLIAVRPSGYGGA 188
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Match: A0A7S2LZT3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LZT3_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.410e-9 Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 109 RATTCFNEICDVYGEENAIKMVKAVPNCLAYDSTIFRETFEAFCEVFDPEDTKGMVTRNPNLLGVRPRGFGGAANAKSDTMTMSYLIAFTR 381
+ ++ FNE+ +YG+E A+ MVK P L +D+ F E++ E F E + MV RNP LLGV+P +M SY++A R
Sbjct: 64 KLSSTFNELAKLYGDEEALGMVKIEPRVLRFDAENFEPCLESWTEQFGLEKAQAMVKRNPGLLGVKP----SLTEDADSSMYGSYVVAALR 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25622.6978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25622.6978.1 >prot_H-paniculata_contig25622.6978.1 ID=prot_H-paniculata_contig25622.6978.1|Name=mRNA_H-paniculata_contig25622.6978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp MMSTTADEAVSRYKNFVGNKKFEEMENAEQRATTCFNEICDVYGEENAIKback to top mRNA from alignment at H-paniculata_contig25622:2667..3508+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25622.6978.1 ID=mRNA_H-paniculata_contig25622.6978.1|Name=mRNA_H-paniculata_contig25622.6978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at H-paniculata_contig25622:2667..3508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25622:2667..3508+ >mRNA_H-paniculata_contig25622.6978.1 ID=mRNA_H-paniculata_contig25622.6978.1|Name=mRNA_H-paniculata_contig25622.6978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig25622:2667..3508+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |