mRNA_H-paniculata_contig25613.6976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25613.6976.1
Unique NamemRNA_H-paniculata_contig25613.6976.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: D8LNK5_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK5_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 1.110e-90
Identity = 150/213 (70.42%), Postives = 168/213 (78.87%), Query Frame = 1
Query:   31 PATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAALGTDEAHAMTVALRGAPP--SFSPGDKRIASRHQEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMVGGAGRIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLASAGSKKDSHFTMSLYCTS 663
            PA   SPTSL++V T  NYTRLVL+NPK  EPARGGSFVYISVP ALGTDEAHAM+VALRG+PP  SF      + S  QEE FTLY+KDLGPWT ALR  A       DP +LLVDVDGFY+ V SFNTMM  GA R+V++AGGSG TS+MGFIQDWCV A+AGS VP VH  WCCR+M EM+LVGES+PSMLASAGSKK SHFT+SLYCTS
Sbjct:  319 PAESPSPTSLLDVHTTENYTRLVLKNPKCDEPARGGSFVYISVPGALGTDEAHAMSVALRGSPPPSSFKTSVAPL-SVPQEEIFTLYVKDLGPWTKALRRAAGNVA---DPGALLVDVDGFYSQVASFNTMMKRGASRVVIIAGGSGVTSVMGFIQDWCVVAAAGSVVPEVHLAWCCRTMVEMQLVGESIPSMLASAGSKKGSHFTLSLYCTS 527          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: D7FK19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK19_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 9.790e-88
Identity = 145/222 (65.32%), Postives = 168/222 (75.68%), Query Frame = 1
Query:   31 PATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAALGTDEAHAMTVALRGAPPS------FSPGDKRIASRHQEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKS-LLVDVDGFYTHVTSFNTMMVGGAGRIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLASAGSKKDSHFTMSLYCTSSKVW 675
            P TKASPTSLV+  T  NYTRLVLRNPK    ARGGSFVYIS P ALGTDEAHA+TVALRGAPPS       +P         +E+ FT+YIKDLGPWT AL+  A GA  + +P S LLVDVDGFYT V SFN+MM+GGA R+V+V GGSG TS+ GFIQDWCVAA+ G++VP VH  WCCR++ EMELVGE+LPS+LA AG  KD+HF+MSLYC S K W
Sbjct:  372 PETKASPTSLVSAYTNENYTRLVLRNPKKAS-ARGGSFVYISAPGALGTDEAHAITVALRGAPPSPPSSAKVAPSSDSAVPPREEDVFTVYIKDLGPWTKALKLTAEGAITARNPASALLVDVDGFYTQVNSFNSMMIGGAPRVVIVTGGSGMTSVFGFIQDWCVAAAEGASVPEVHMAWCCRTLSEMELVGEALPSLLAGAGRAKDTHFSMSLYC-SGKGW 591          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: D7FGP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP2_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 5.320e-85
Identity = 147/222 (66.22%), Postives = 168/222 (75.68%), Query Frame = 1
Query:   49 PTSLVNVRTISNYTRLVLRNPKSY-------EPARGGSFVYISVPAALGTDEAHAMTVALRGAPPSFSPGDKRIASRH------QEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMV-GGAGRIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLASAGSKKDSHFTMSLYCTSSKV 672
            PTSLV+V T  NYTRLVLRNPK+          ARGGSFVYISVPAALGTDEAHA+TVALRGAPPSFS   K  + R+      + + FT+YIKDLG WT  L+  A GAE + D +SLLVDVDGFYT V SF++M V GG  R++VVAGGSG TSLMGFIQDW VAA  G+ VP V+  WCCR M EMELVGE LPS+LASAGSKKD+HF+MSLYC+SSK 
Sbjct:  230 PTSLVSVATNDNYTRLVLRNPKTGGVGDSGDRSARGGSFVYISVPAALGTDEAHAITVALRGAPPSFSHAAKLSSGRNSAAQEDENDVFTVYIKDLGKWTKTLKDTARGAEAAGDARSLLVDVDGFYTQVQSFSSMKVAGGTSRVMVVAGGSGMTSLMGFIQDWAVAAREGADVPEVNLAWCCRYMSEMELVGECLPSVLASAGSKKDTHFSMSLYCSSSKA 451          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: D7G5Y8_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G5Y8_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 1.230e-83
Identity = 147/222 (66.22%), Postives = 168/222 (75.68%), Query Frame = 1
Query:   49 PTSLVNVRTISNYTRLVLRNPKSY-------EPARGGSFVYISVPAALGTDEAHAMTVALRGAPPSFSPGDKRIASRH------QEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMV-GGAGRIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLASAGSKKDSHFTMSLYCTSSKV 672
            PTSLV+V T  NYTRLVLRNPK+          ARGGSFVYISVPAALGTDEAHA+TVALRGAPPSFS   K  + R+      + + FT+YIKDLG WT  L+  A GAE + D +SLLVDVDGFYT V SF++M V GG  R++VVAGGSG TSLMGFIQDW VAA  G+ VP V+  WCCR M EMELVGE LPS+LASAGSKKD+HF+MSLYC+SSK 
Sbjct:  388 PTSLVSVATNDNYTRLVLRNPKTGGVGDSGDRSARGGSFVYISVPAALGTDEAHAITVALRGAPPSFSHAAKLSSGRNSAAQEDENDVFTVYIKDLGKWTKTLKDTARGAEAAGDARSLLVDVDGFYTQVQSFSSMKVAGGTSRVMVVAGGSGMTSLMGFIQDWAVAAREGADVPEVNLAWCCRYMSEMELVGECLPSVLASAGSKKDTHFSMSLYCSSSKA 609          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: D7G8Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y6_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.030e-58
Identity = 115/211 (54.50%), Postives = 134/211 (63.51%), Query Frame = 1
Query:   49 PTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAALGTDEAHAMTVALRGAPPSFSPGDKRIASRHQEE--FFTLYIKDLGPWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMV-GGAGRIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLASAGSKKDSHFTMSLYCTSSKV 672
            PTSLV+V T  NYTRLVLRNPK+                                       G +R   R ++E   FT+YIKDLG WT  L+  A GAE + D +SLLVDVDGFYT V SF++M V GG  R++VVAGGSG TSLMGFIQDW VAA  G+ VP V+  WCCR M EMELVGE LPS+LASAGSKKD+HF+MSLYC+SSK 
Sbjct:  257 PTSLVSVATNDNYTRLVLRNPKT---------------------------------------GRRRGQRRQEDENDVFTVYIKDLGKWTKTLKDTARGAEAAGDARSLLVDVDGFYTQVQSFSSMKVAGGTSRVMVVAGGSGMTSLMGFIQDWAVAAREGADVPEVNLAWCCRYMSEMELVGECLPSVLASAGSKKDTHFSMSLYCSSSKA 428          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: A0A6H5KAK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK2_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 6.920e-58
Identity = 105/167 (62.87%), Postives = 120/167 (71.86%), Query Frame = 1
Query:   13 WNRWWSPATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAALGTDEAHAMTVALRGAPP------SFSPGDKRIASRHQEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKS-LLVDVDGFYTHVTSFNTMMVGGAGRIVVVAGGSGATSLMGFIQ 492
            W RW+ P TKASPTSLV+  T  NYTRLVLRNPK    ARGGSFVYIS P ALGTDEAHA+TVALRG PP        +P  +      +E+ FT+YIKDLGPWT AL+  A GA  +  P S LLVDVDGFYT V SFN+MM+GGA R+V+V GGSG TS+ GFIQ
Sbjct:  267 WKRWFKPETKASPTSLVSAYTNENYTRLVLRNPKKAS-ARGGSFVYISAPGALGTDEAHAITVALRGPPPCPPSSAKVAPSSESAEPPREEDVFTVYIKDLGPWTKALKLTAEGAITARSPASALLVDVDGFYTQVDSFNSMMIGGAPRVVIVTGGSGMTSVFGFIQ 432          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: A0A6H5KRK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK1_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.130e-51
Identity = 109/225 (48.44%), Postives = 136/225 (60.44%), Query Frame = 1
Query:   13 WNRWWS---------PATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAALGTDEAHAMTVALRGAPPSFSPGDKRIASRHQEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMVGGAGRIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLASAGSKKDSHFTMSLYCT 660
            WN WWS          A      +LV++     YTRLVLRNP ++ PA+GG+FVYISVPA LGT EAH M+VALRGAPP          +   +  FTLY+K +G WT AL+      + SDD   L V VDG Y    S  +M   G  R+V+ AGGSG TS    IQDWC A S G  VPAVH VW CRSM E+EL+GE++PS LA+A +  +S F MS++C+
Sbjct:  345 WN-WWSVLRQCFCKSSARGCGGCALVHLEAGDGYTRLVLRNPSNHSPAKGGAFVYISVPALLGTIEAHPMSVALRGAPPHL------WNAAFDDGVFTLYVKTMGSWTLALQK-----QESDD---LTVHVDGLYGGAPSLASMKQAGFPRVVLFAGGSGVTSFTTLIQDWCEAYSGGEDVPAVHLVWSCRSMSEIELLGEAIPSFLAAAPAGAESLFNMSMFCS 554          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: D7G4X0_ECTSI (Ferric chelate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X0_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 3.440e-51
Identity = 106/225 (47.11%), Postives = 132/225 (58.67%), Query Frame = 1
Query:   13 WNRWWS---------PATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAALGTDEAHAMTVALRGAPPSFSPGDKRIASRHQEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMVGGAGRIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLASAGSKKDSHFTMSLYCT 660
            WN WWS          A      +LV++     YTRLVLRNP ++ PA+GG+FVYISVPA LGT EAH M+VALRGAPP              +  FTLYIK +G WT AL+          +  +L V VDG Y    S  +M   G  ++V+ AGGSG TS    IQDWC A S G  VPAVH VW CR M E+EL+GE+LPS LA+A +  +S F MS++C+
Sbjct:  191 WN-WWSVLRQCFCKSSARGCGDCALVHLEAGDGYTRLVLRNPSNHSPAKGGTFVYISVPALLGTIEAHPMSVALRGAPPHLWNASL------DDGVFTLYIKTMGSWTLALQK--------QESDNLTVHVDGLYGGAPSLASMKQAGFPKVVLFAGGSGVTSFTALIQDWCEAYSGGEDVPAVHLVWSCRRMSEIELLGEALPSFLAAAAAGAESLFKMSMFCS 400          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: A0A835YW60_9STRA (Ferric oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW60_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.120e-23
Identity = 77/210 (36.67%), Postives = 106/210 (50.48%), Query Frame = 1
Query:    1 RWRYWNRWWSPATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAAL--GTDEAHAMTVALRGAPPSFSPGDKRIASRHQEEFFTLYIKDLGPWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMVGGAG-----RIVVVAGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPSMLA 609
            RWR W RW  PA + S  S   V   ++ TR      KS  P  GGSFVY+SVP A+  G +EAHA+TVALRGAPP+       +      +  + YIKD G W+GA+  +A   ++  DP++L+VD DG Y    +  T+  G A      R+++VAG                          VH VW CR++QE+  VG ++PS  A
Sbjct:  403 RWRLWQRWTGPAAERS--SSAPVAEGASKTR------KS--PVHGGSFVYMSVPGAMAQGANEAHAITVALRGAPPA-------VPGCGAADRCSFYIKDSGAWSGAVVRMAG--QMGLDPQALIVDTDGPYIRCATMLTLSCGAAASGTPPRVLLVAG-------------------------EVHLVWVCRNIQELTFVGAAIPSFTA 568          
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Match: A0A6H5JBW2_9PHAE (Ferric oxidoreductase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.320e-22
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    4 WRYWNRWWSPATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVYISVPAALGTDEAHAMTVALRGAPP 222
            WRYWNR   PA  ASPTSL++V T  N T LVL++P   EPARGGSFVYISVP  LGTD+ +AMTV+LRG+PP
Sbjct:   92 WRYWNRCLKPADSASPTSLLDVHTTENCTCLVLKSPTCDEPARGGSFVYISVPGGLGTDKVYAMTVSLRGSPP 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25613.6976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LNK5_ECTSI1.110e-9070.42Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta... [more]
D7FK19_ECTSI9.790e-8865.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGP2_ECTSI5.320e-8566.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y8_ECTSI1.230e-8366.22Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G8Y6_ECTSI1.030e-5854.50Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KAK2_9PHAE6.920e-5862.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRK1_9PHAE2.130e-5148.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4X0_ECTSI3.440e-5147.11Ferric chelate reductase n=1 Tax=Ectocarpus silicu... [more]
A0A835YW60_9STRA1.120e-2336.67Ferric oxidoreductase domain-containing protein n=... [more]
A0A6H5JBW2_9PHAE2.320e-2267.12Ferric oxidoreductase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25613contigH-paniculata_contig25613:2005..3221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue1.1e-76
Seed eggNOG ortholog2880.D8LNK5
Preferred nameAIM14
KEGG koko:K00521
Hectar predicted targeting categorymitochondrion
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006873,GO:0006875,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016175,GO:0016491,GO:0016651,GO:0016722,GO:0019725,GO:0030003,GO:0031090,GO:0031224,GO:0032956,GO:0032970,GO:0033043,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0048878,GO:0050664,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051493,GO:0055065,GO:0055080,GO:0055082,GO:0055114,GO:0065007,GO:0065008,GO:0097038,GO:0098588,GO:0098771,GO:0098805,GO:0098852
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
EC1.16.1.7
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size675
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.6403737-CDS-H-paniculata_contig25613:2004..21871622929757.6403737-CDS-H-paniculata_contig25613:2004..2187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25613 2005..2187 -
1691480998.1250298-CDS-H-paniculata_contig25613:2004..21871691480998.1250298-CDS-H-paniculata_contig25613:2004..2187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25613 2005..2187 -
1622929757.650666-CDS-H-paniculata_contig25613:2729..32211622929757.650666-CDS-H-paniculata_contig25613:2729..3221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25613 2730..3221 -
1691480998.134971-CDS-H-paniculata_contig25613:2729..32211691480998.134971-CDS-H-paniculata_contig25613:2729..3221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25613 2730..3221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25613.6976.1prot_H-paniculata_contig25613.6976.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25613 2005..3221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25613.6976.1

>prot_H-paniculata_contig25613.6976.1 ID=prot_H-paniculata_contig25613.6976.1|Name=mRNA_H-paniculata_contig25613.6976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
RWRYWNRWWSPATKASPTSLVNVRTISNYTRLVLRNPKSYEPARGGSFVY
ISVPAALGTDEAHAMTVALRGAPPSFSPGDKRIASRHQEEFFTLYIKDLG
PWTGALRSVANGAEVSDDPKSLLVDVDGFYTHVTSFNTMMVGGAGRIVVV
AGGSGATSLMGFIQDWCVAASAGSAVPAVHFVWCCRSMQEMELVGESLPS
MLASAGSKKDSHFTMSLYCTSSKVW
back to top

mRNA from alignment at H-paniculata_contig25613:2005..3221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25613.6976.1 ID=mRNA_H-paniculata_contig25613.6976.1|Name=mRNA_H-paniculata_contig25613.6976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1217bp|location=Sequence derived from alignment at H-paniculata_contig25613:2005..3221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGCGCTACTGGAACCGCTGGTGGAGCCCGGCAACCAAGGCCAGCCC GACAAGTCTCGTCAACGTCCGCACCATCTCCAATTACACCCGTCTCGTGC TCCGCAACCCCAAGAGCTACGAGCCTGCCAGAGGTGGGTCGTTTGTCTAC ATTAGCGTGCCCGCGGCCCTTGGCACCGACGAAGCCCACGCCATGACAGT TGCGCTCCGGGGTGCCCCTCCTTCTTTCAGCCCCGGAGACAAGCGCATAG CTAGCAGGCACCAGGAAGAGTTCTTCACTCTGTATATCAAGGACTTGGGC CCGTGGACAGGCGCTCTTCGCTCGGTCGCAAATGGCGCCGAAGTCTCTGA CGACCCCAAGTCTTTGCTCGTTGATGTGGATGGGTTCTACACTCATGTGA CCTCGTTTAACACGATGATGGTCGGTGGCGCGGGGCGCATTGTCGTGGTG GCTGGAGGGTCGGGGGCTACGTCCCTGATGGGATTCATTCAGGTGAACCA AATTATTTCCTGCCTCTCTCTCCCACCCCTACGCCCGTCCCGTAGATTTG CCAACTGCTTGCATGCATTGTTGTGTCGGAAAAATATATTGGAGACCATC AGGTCACGATTGGGCAAACAGGAAGGAACTGCTGATTAGCTCTCTGAGTG GAGTGCTTTAGCAAACCCGTCACGCGAGCAGATGGATGTACCGTGGATGT ATCACCCAAGTCAGCTGTTTAATCGACTGATAACAACTGTAGTTCCCGGG CCCACCACTTGGTCACTAATGCTCCGCTGTGTGCTCAAGGTAGAAATCGT GCGTACTATGGTACTTGCAGTGGAGAGCTTATCCGGACCCATGATGGATC TCAACAATCTGCGCAGACTTGACTACACAGTCGAATAATTTGGGACGTGT GGCTAACACGCGCGCCAGCAGCCGACAGTATGATTTGCTGGTGCGGCATC ACCCCGCTATAAACTAACGCACACTACGCATGGTTACCCCCCCCACACAC AACGCTCGCGCGTGCGCTTTGCCCTCCGGCTCAGGACTGGTGCGTCGCGG CGTCCGCAGGGTCGGCCGTGCCCGCGGTCCATTTTGTATGGTGCTGCCGT TCAATGCAAGAGATGGAGCTTGTGGGCGAATCTCTCCCCTCGATGCTCGC CTCTGCTGGAAGCAAGAAGGATTCTCACTTCACGATGTCCCTCTACTGCA CCAGCAGCAAGGTTTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25613:2005..3221-

>mRNA_H-paniculata_contig25613.6976.1 ID=mRNA_H-paniculata_contig25613.6976.1|Name=mRNA_H-paniculata_contig25613.6976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig25613:2005..3221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGCGCTACTGGAACCGCTGGTGGAGCCCGGCAACCAAGGCCAGCCC
GACAAGTCTCGTCAACGTCCGCACCATCTCCAATTACACCCGTCTCGTGC
TCCGCAACCCCAAGAGCTACGAGCCTGCCAGAGGTGGGTCGTTTGTCTAC
ATTAGCGTGCCCGCGGCCCTTGGCACCGACGAAGCCCACGCCATGACAGT
TGCGCTCCGGGGTGCCCCTCCTTCTTTCAGCCCCGGAGACAAGCGCATAG
CTAGCAGGCACCAGGAAGAGTTCTTCACTCTGTATATCAAGGACTTGGGC
CCGTGGACAGGCGCTCTTCGCTCGGTCGCAAATGGCGCCGAAGTCTCTGA
CGACCCCAAGTCTTTGCTCGTTGATGTGGATGGGTTCTACACTCATGTGA
CCTCGTTTAACACGATGATGGTCGGTGGCGCGGGGCGCATTGTCGTGGTG
GCTGGAGGGTCGGGGGCTACGTCCCTGATGGGATTCATTCAGAGGTGGCG
CTACTGGAACCGCTGGTGGAGCCCGGCAACCAAGGCCAGCCCGACAAGTC
TCGTCAACGTCCGCACCATCTCCAATTACACCCGTCTCGTGCTCCGCAAC
CCCAAGAGCTACGAGCCTGCCAGAGGTGGGTCGTTTGTCTACATTAGCGT
GCCCGCGGCCCTTGGCACCGACGAAGCCCACGCCATGACAGTTGCGCTCC
GGGGTGCCCCTCCTTCTTTCAGCCCCGGAGACAAGCGCATAGCTAGCAGG
CACCAGGAAGAGTTCTTCACTCTGTATATCAAGGACTTGGGCCCGTGGAC
AGGCGCTCTTCGCTCGGTCGCAAATGGCGCCGAAGTCTCTGACGACCCCA
AGTCTTTGCTCGTTGATGTGGATGGGTTCTACACTCATGTGACCTCGTTT
AACACGATGATGGTCGGTGGCGCGGGGCGCATTGTCGTGGTGGCTGGAGG
GTCGGGGGCTACGTCCCTGATGGGATTCATTCAGGACTGGTGCGTCGCGG
CGTCCGCAGGGTCGGCCGTGCCCGCGGTCCATTTTGTATGGTGCTGCCGT
TCAATGCAAGAGATGGAGCTTGTGGGCGAATCTCTCCCCTCGATGCTCGC
CTCTGCTGGAAGCAAGAAGGATTCTCACTTCACGATGTCCCTCTACTGCA
CCAGCAGCAAGGTTTGGGACTGGTGCGTCGCGGCGTCCGCAGGGTCGGCC
GTGCCCGCGGTCCATTTTGTATGGTGCTGCCGTTCAATGCAAGAGATGGA
GCTTGTGGGCGAATCTCTCCCCTCGATGCTCGCCTCTGCTGGAAGCAAGA
AGGATTCTCACTTCACGATGTCCCTCTACTGCACCAGCAGCAAGGTTTGG
back to top