mRNA_H-paniculata_contig2561.6972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI) HSP 1 Score: 159 bits (403), Expect = 2.460e-49 Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1
Query: 1 MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
MSARPVIKTSTMA DMQEAAIQ VAQDAIRDNNLEK+IANAVK AF LYPSLWHCFVGRNFGC+VTHEHTKF+YLYIGQ+GVCLFSTA
Sbjct: 1 MSARPVIKTSTMAPDMQEAAIQ---VAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA) HSP 1 Score: 146 bits (368), Expect = 5.380e-44 Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 1
Query: 1 MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
MSARPVIKTSTM ADMQEAAIQ VAQDAI+DNNLEKEIA+A+KT F +YPS+WHCFVGRNFG +VTHE +KFIY YIGQ+GVCLFSTA
Sbjct: 1 MSARPVIKTSTMPADMQEAAIQ---VAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA) HSP 1 Score: 109 bits (272), Expect = 6.370e-29 Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 16 VIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
V+K S M +MQ+AA+Q +AQDAIR++ E+EIA+A+K F +Y + WHCFVGRNFGCYVTH+ F+Y YIGQLG+CLF+T
Sbjct: 41 VVKASRMEQEMQDAAVQ---IAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA) HSP 1 Score: 108 bits (271), Expect = 7.380e-29 Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 1
Query: 1 MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
M+ARPVIK S+M DMQE AIQ AQDAI N E+EIA A++ ++P+ WH VGRNFGC+VTHE +KFIY YIGQ+GVC+F+TA
Sbjct: 29 MAARPVIKHSSMTPDMQEMAIQC---AQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.870e-23 Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 16 VIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
++K + M M E AI VA AI+ N EKE A+A+K L+P +WHCFVGR FGCYVTHE +KFIY Y+GQLGVCLFS+
Sbjct: 95 IVKLNQMETVMAERAID---VALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: K3WKC4_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC4_GLOUD) HSP 1 Score: 85.1 bits (209), Expect = 9.480e-20 Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 10 RPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPS-LWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
+PV+KTSTM D+Q+ I Q A D D E++IA VK F Y LWHC VGRN CYVTHE +KF+Y YIGQ+ V LF+TA
Sbjct: 5 KPVVKTSTMDPDLQDEVILVAQHAMDTEID---EQQIAAKVKQHFEQKYHGMLWHCCVGRNVACYVTHEQSKFLYFYIGQMAVVLFATA 90
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: U4LB13_PYROM (Dynein light chain n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LB13_PYROM) HSP 1 Score: 84.3 bits (207), Expect = 2.860e-19 Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query: 19 IKTSTMAADMQE-AAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
+KT+ + DM E A A +VA+ A+++NN+EK+IA +K F Y + WHC VGRNFG +VTHE FIY Y+G L V L+ TA
Sbjct: 20 LKTTVKSVDMAEDMAAAAQEVAKKAMKENNVEKDIAQMIKKEFDAKYGNTWHCIVGRNFGSFVTHETKHFIYFYVGNLAVLLYKTA 105
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A3P6THM2_DIBLA (Dynein light chain n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6THM2_DIBLA) HSP 1 Score: 80.9 bits (198), Expect = 4.570e-18 Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 4 SARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
S + ++K + M+ DMQ+ AIQA ++A++ N+EK+IA +K F + WHC VGRNFG YVTHE +FIY Y+GQ+ + LF +
Sbjct: 5 SDQAIVKNADMSEDMQQDAIQA---GKEALKQYNIEKDIAAYIKKKFDKDHGPTWHCIVGRNFGSYVTHETKQFIYFYMGQVAILLFKS 90
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A183SDF9_SCHSO (Dynein light chain n=3 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A183SDF9_SCHSO) HSP 1 Score: 80.9 bits (198), Expect = 4.820e-18 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 10 RPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
R ++K + M DMQ+ A++ VA A+ N +EKEIA +K F + WHC VGRNFGCYVTHE FIY +GQ + LF +
Sbjct: 9 RAIVKNADMPEDMQQDAVE---VATTAMNHNTIEKEIAAEIKKEFDRRFNPNWHCIVGRNFGCYVTHETKSFIYFLMGQTAILLFKS 92
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A067CKL0_SAPPC (Dynein light chain n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CKL0_SAPPC) HSP 1 Score: 80.5 bits (197), Expect = 6.650e-18 Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 4 SARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPS-LWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
S +PV+K STM D+ + I VAQ AI E+ IA +K F Y LWHC VGRN CYVTHE +KF+Y YIGQ+ + LF+TA
Sbjct: 5 SVKPVVKNSTMDQDLLDEVIW---VAQAAIESEVNEQHIAAKIKKHFELKYHGMLWHCCVGRNMACYVTHEQSKFLYFYIGQMAIVLFATA 92 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2561.6972.1 >prot_H-paniculata_contig2561.6972.1 ID=prot_H-paniculata_contig2561.6972.1|Name=mRNA_H-paniculata_contig2561.6972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHback to top mRNA from alignment at H-paniculata_contig2561:7355..8394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2561.6972.1 ID=mRNA_H-paniculata_contig2561.6972.1|Name=mRNA_H-paniculata_contig2561.6972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-paniculata_contig2561:7355..8394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2561:7355..8394+ >mRNA_H-paniculata_contig2561.6972.1 ID=mRNA_H-paniculata_contig2561.6972.1|Name=mRNA_H-paniculata_contig2561.6972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig2561:7355..8394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |