mRNA_H-paniculata_contig2561.6972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2561.6972.1
Unique NamemRNA_H-paniculata_contig2561.6972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.460e-49
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1
Query:    1 MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
            MSARPVIKTSTMA DMQEAAIQ   VAQDAIRDNNLEK+IANAVK AF  LYPSLWHCFVGRNFGC+VTHEHTKF+YLYIGQ+GVCLFSTA
Sbjct:    1 MSARPVIKTSTMAPDMQEAAIQ---VAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.380e-44
Identity = 73/91 (80.22%), Postives = 81/91 (89.01%), Query Frame = 1
Query:    1 MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
            MSARPVIKTSTM ADMQEAAIQ   VAQDAI+DNNLEKEIA+A+KT F  +YPS+WHCFVGRNFG +VTHE +KFIY YIGQ+GVCLFSTA
Sbjct:    1 MSARPVIKTSTMPADMQEAAIQ---VAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.370e-29
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   16 VIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
            V+K S M  +MQ+AA+Q   +AQDAIR++  E+EIA+A+K  F  +Y + WHCFVGRNFGCYVTH+   F+Y YIGQLG+CLF+T
Sbjct:   41 VVKASRMEQEMQDAAVQ---IAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.380e-29
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
            M+ARPVIK S+M  DMQE AIQ    AQDAI   N E+EIA A++     ++P+ WH  VGRNFGC+VTHE +KFIY YIGQ+GVC+F+TA
Sbjct:   29 MAARPVIKHSSMTPDMQEMAIQC---AQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.870e-23
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   16 VIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
            ++K + M   M E AI    VA  AI+  N EKE A+A+K     L+P +WHCFVGR FGCYVTHE +KFIY Y+GQLGVCLFS+
Sbjct:   95 IVKLNQMETVMAERAID---VALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: K3WKC4_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC4_GLOUD)

HSP 1 Score: 85.1 bits (209), Expect = 9.480e-20
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   10 RPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPS-LWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
            +PV+KTSTM  D+Q+  I   Q A D   D   E++IA  VK  F   Y   LWHC VGRN  CYVTHE +KF+Y YIGQ+ V LF+TA
Sbjct:    5 KPVVKTSTMDPDLQDEVILVAQHAMDTEID---EQQIAAKVKQHFEQKYHGMLWHCCVGRNVACYVTHEQSKFLYFYIGQMAVVLFATA 90          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: U4LB13_PYROM (Dynein light chain n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LB13_PYROM)

HSP 1 Score: 84.3 bits (207), Expect = 2.860e-19
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   19 IKTSTMAADMQE-AAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
            +KT+  + DM E  A  A +VA+ A+++NN+EK+IA  +K  F   Y + WHC VGRNFG +VTHE   FIY Y+G L V L+ TA
Sbjct:   20 LKTTVKSVDMAEDMAAAAQEVAKKAMKENNVEKDIAQMIKKEFDAKYGNTWHCIVGRNFGSFVTHETKHFIYFYVGNLAVLLYKTA 105          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A3P6THM2_DIBLA (Dynein light chain n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6THM2_DIBLA)

HSP 1 Score: 80.9 bits (198), Expect = 4.570e-18
Identity = 40/89 (44.94%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    4 SARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
            S + ++K + M+ DMQ+ AIQA    ++A++  N+EK+IA  +K  F   +   WHC VGRNFG YVTHE  +FIY Y+GQ+ + LF +
Sbjct:    5 SDQAIVKNADMSEDMQQDAIQA---GKEALKQYNIEKDIAAYIKKKFDKDHGPTWHCIVGRNFGSYVTHETKQFIYFYMGQVAILLFKS 90          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A183SDF9_SCHSO (Dynein light chain n=3 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A183SDF9_SCHSO)

HSP 1 Score: 80.9 bits (198), Expect = 4.820e-18
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   10 RPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFST 270
            R ++K + M  DMQ+ A++   VA  A+  N +EKEIA  +K  F   +   WHC VGRNFGCYVTHE   FIY  +GQ  + LF +
Sbjct:    9 RAIVKNADMPEDMQQDAVE---VATTAMNHNTIEKEIAAEIKKEFDRRFNPNWHCIVGRNFGCYVTHETKSFIYFLMGQTAILLFKS 92          
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Match: A0A067CKL0_SAPPC (Dynein light chain n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CKL0_SAPPC)

HSP 1 Score: 80.5 bits (197), Expect = 6.650e-18
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    4 SARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTHLYPS-LWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA 273
            S +PV+K STM  D+ +  I    VAQ AI     E+ IA  +K  F   Y   LWHC VGRN  CYVTHE +KF+Y YIGQ+ + LF+TA
Sbjct:    5 SVKPVVKNSTMDQDLLDEVIW---VAQAAIESEVNEQHIAAKIKKHFELKYHGMLWHCCVGRNMACYVTHEQSKFLYFYIGQMAIVLFATA 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2561.6972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM6_ECTSI2.460e-4987.91Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CI24_9STRA5.380e-4480.22Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1UG18_9STRA6.370e-2958.82Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S2STQ1_9STRA7.380e-2960.44Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1C452_9STRA1.870e-2356.47Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
K3WKC4_GLOUD9.480e-2052.81Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
U4LB13_PYROM2.860e-1948.84Dynein light chain n=1 Tax=Pyronema omphalodes (st... [more]
A0A3P6THM2_DIBLA4.570e-1844.94Dynein light chain n=1 Tax=Dibothriocephalus latus... [more]
A0A183SDF9_SCHSO4.820e-1845.98Dynein light chain n=3 Tax=Diphyllobothriidae TaxI... [more]
A0A067CKL0_SAPPC6.650e-1849.45Dynein light chain n=3 Tax=Saprolegniaceae TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2561contigH-paniculata_contig2561:7355..8394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue7e-38
Seed eggNOG ortholog2880.D8LRM6
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-12_000380.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons3
Model size276
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2561.6972.1prot_H-paniculata_contig2561.6972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2561 7355..8394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929757.1703477-CDS-H-paniculata_contig2561:7354..74241622929757.1703477-CDS-H-paniculata_contig2561:7354..7424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 7355..7424 +
1691480997.9969492-CDS-H-paniculata_contig2561:7354..74241691480997.9969492-CDS-H-paniculata_contig2561:7354..7424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 7355..7424 +
1622929757.1893604-CDS-H-paniculata_contig2561:7621..77151622929757.1893604-CDS-H-paniculata_contig2561:7621..7715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 7622..7715 +
1691480998.0064871-CDS-H-paniculata_contig2561:7621..77151691480998.0064871-CDS-H-paniculata_contig2561:7621..7715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 7622..7715 +
1622929757.2033703-CDS-H-paniculata_contig2561:8282..83941622929757.2033703-CDS-H-paniculata_contig2561:8282..8394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 8283..8394 +
1691480998.0139244-CDS-H-paniculata_contig2561:8282..83941691480998.0139244-CDS-H-paniculata_contig2561:8282..8394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2561 8283..8394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2561.6972.1

>prot_H-paniculata_contig2561.6972.1 ID=prot_H-paniculata_contig2561.6972.1|Name=mRNA_H-paniculata_contig2561.6972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MSARPVIKTSTMAADMQEAAIQATQVAQDAIRDNNLEKEIANAVKTAFTH
LYPSLWHCFVGRNFGCYVTHEHTKFIYLYIGQLGVCLFSTA*
back to top

mRNA from alignment at H-paniculata_contig2561:7355..8394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2561.6972.1 ID=mRNA_H-paniculata_contig2561.6972.1|Name=mRNA_H-paniculata_contig2561.6972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-paniculata_contig2561:7355..8394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGCACGACCAGTCATCAAGACAAGTACCATGGCTGCCGATATGCA GGAGGCTGCAATACAGGCTAGTGATAATGTGGAGGATCCTACTCATACCC GTTGTTTTGTAAATATAGACCTAGAACCAGATATCCTCTTTGTTCCAGTC CTGGGATCTTGTATCACACAGCTGTCTGGATGCATCATATTCTTCCTAGG CATGACATTTGCAAAGGAGCTACAAATGATCTTCGTGGACCCTTATTGTA GTGTTTTCCTGCTCAAGCACAGGTTGCTCAGGACGCAATTCGAGACAACA ACTTGGAGAAGGAAATTGCCAACGCTGTCAAGACCGCCTTCACACATCTC TATCCGTCCTTGTAAGCTTACCAGTATCGTGATCAATCCTTCTAATAGTG CCGGAGGTTGTTTCGGAACAAAAAACGTTAGCTAGCTGACAACAAATAAT ATAGTCGAGCACTGCAGTCGTTGTGGTCAGAACCATGCCAACTCTCTGCC TGTGTTGTATGTAATTTACCGTGTGTACTGAAGTATATGTCTGAACAGCA GCGGCTTGTCGTCGAAATCATGTCAAGGCACCGCTTTCCCCTATATTTGG GGCATCTAGGATTAGCAATGGATTAAATGATGATAGCCAGCGCTAAAGGA GCTGAGCACGATTTCCCCTCAACACTCAGTACTGTACAGCATACACCAAC ATGCACTAATCTATTGTACCACGTGTGCTATGAATAGTAAGTAGCCCTGA TGCTGCTCGAATCGAACCAACCCGCACGCAAACTCGGAGTAGATGTCCGT GCGTAGAGCTCTTCTAGCACCGATTGTTCCTAGGCGAAACAGCACGTAAA TCTACCGTTATAGGTAGCCTGCGTTCATGACTCACGATTAACCTCGTTGC GTATACCTCATTTATGCTTCCTCATCAGGTGGCACTGCTTTGTAGGGAGG AATTTCGGGTGCTACGTCACCCACGAACATACCAAGTTCATATATCTCTA CATCGGTCAATTGGGGGTGTGCTTGTTCTCAACGGCATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2561:7355..8394+

>mRNA_H-paniculata_contig2561.6972.1 ID=mRNA_H-paniculata_contig2561.6972.1|Name=mRNA_H-paniculata_contig2561.6972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig2561:7355..8394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGCACGACCAGTCATCAAGACAAGTACCATGGCTGCCGATATGCA
GGAGGCTGCAATACAGGCTAATGTCAGCACGACCAGTCATCAAGACAAGT
ACCATGGCTGCCGATATGCAGGAGGCTGCAATACAGGCTACACAGGTTGC
TCAGGACGCAATTCGAGACAACAACTTGGAGAAGGAAATTGCCAACGCTG
TCAAGACCGCCTTCACACATCTCTATCCGTCCTTCACAGGTTGCTCAGGA
CGCAATTCGAGACAACAACTTGGAGAAGGAAATTGCCAACGCTGTCAAGA
CCGCCTTCACACATCTCTATCCGTCCTTGTGGCACTGCTTTGTAGGGAGG
AATTTCGGGTGCTACGTCACCCACGAACATACCAAGTTCATATATCTCTA
CATCGGTCAATTGGGGGTGTGCTTGTTCTCAACGGCATGAGTGGCACTGC
TTTGTAGGGAGGAATTTCGGGTGCTACGTCACCCACGAACATACCAAGTT
CATATATCTCTACATCGGTCAATTGGGGGTGTGCTTGTTCTCAACGGCAT
GA
back to top