mRNA_H-paniculata_contig25460.6937.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25460.6937.1
Unique NamemRNA_H-paniculata_contig25460.6937.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig25460.6937.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.360e-6
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  133 FHMQMALHPSTADLVYVDQLCTTAVRATEVKNKIASKVVSLTVTLGQRAA 282
            F MQMALHP+TADL YVD+L +T+  A  VK+ I  KV+SL V L + AA
Sbjct:  264 FDMQMALHPTTADLRYVDKLASTSAFAGAVKSTITDKVISLAVKLAEAAA 313
[Close]
BLAST of mRNA_H-paniculata_contig25460.6937.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.580e-5
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  133 FHMQMALHPSTADLVYVDQLCTTAVRATEVKNKIASKVVSLTVTLGQR 276
            F MQM LHP+TADL YVD+L +T V A  VK  I  K+++L V L ++
Sbjct:  404 FDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEK 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25460.6937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNY1_9PHAE5.360e-658.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI3.580e-552.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25460contigH-paniculata_contig25460:2070..2417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size350
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.667678-UTR-H-paniculata_contig25460:2069..21861622929751.667678-UTR-H-paniculata_contig25460:2069..2186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25460 2070..2186 +
1691480995.8172615-UTR-H-paniculata_contig25460:2069..21861691480995.8172615-UTR-H-paniculata_contig25460:2069..2186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25460 2070..2186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.6822793-CDS-H-paniculata_contig25460:2186..24171622929751.6822793-CDS-H-paniculata_contig25460:2186..2417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25460 2187..2417 +
1691480995.8268025-CDS-H-paniculata_contig25460:2186..24171691480995.8268025-CDS-H-paniculata_contig25460:2186..2417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25460 2187..2417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25460.6937.1prot_H-paniculata_contig25460.6937.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25460 2187..2417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25460.6937.1

>prot_H-paniculata_contig25460.6937.1 ID=prot_H-paniculata_contig25460.6937.1|Name=mRNA_H-paniculata_contig25460.6937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MKTRTFHMQMALHPSTADLVYVDQLCTTAVRATEVKNKIASKVVSLTVTL
GQRAADDDDVGGSEVPAKRKAAAALGT
back to top

mRNA from alignment at H-paniculata_contig25460:2070..2417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25460.6937.1 ID=mRNA_H-paniculata_contig25460.6937.1|Name=mRNA_H-paniculata_contig25460.6937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at H-paniculata_contig25460:2070..2417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAGAACACGCCCGTGCCACCCTCTGATCTGACAAAGGCCGCCACGAGG
ACGCGCGAGAAGCTCCGAGACGCCATCGACTACCGCTGGTTCGACAAGCG
CTATAACTCCGACGGAGATGAAGACACGGACTTTCCACATGCAGATGGCC
CTCCACCCCTCAACAGCAGACCTGGTCTACGTCGACCAATTATGTACGAC
TGCAGTCCGTGCAACCGAGGTCAAGAACAAGATTGCATCCAAGGTTGTCT
CCTTGACCGTTACTCTCGGTCAGAGGGCGGCCGACGATGACGACGTGGGG
GGCAGCGAGGTGCCAGCAAAGCGAAAGGCCGCAGCAGCATTGGGCACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25460:2070..2417+

>mRNA_H-paniculata_contig25460.6937.1 ID=mRNA_H-paniculata_contig25460.6937.1|Name=mRNA_H-paniculata_contig25460.6937.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig25460:2070..2417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACACGGACTTTCCACATGCAGATGGCCCTCCACCCCTCAACAGC
AGACCTGGTCTACGTCGACCAATTATGTACGACTGCAGTCCGTGCAACCG
AGGTCAAGAACAAGATTGCATCCAAGGTTGTCTCCTTGACCGTTACTCTC
GGTCAGAGGGCGGCCGACGATGACGACGTGGGGGGCAGCGAGGTGCCAGC
AAAGCGAAAGGCCGCAGCAGCATTGGGCACGATGAAGACACGGACTTTCC
ACATGCAGATGGCCCTCCACCCCTCAACAGCAGACCTGGTCTACGTCGAC
CAATTATGTACGACTGCAGTCCGTGCAACCGAGGTCAAGAACAAGATTGC
ATCCAAGGTTGTCTCCTTGACCGTTACTCTCGGTCAGAGGGCGGCCGACG
ATGACGACGTGGGGGGCAGCGAGGTGCCAGCAAAGCGAAAGGCCGCAGCA
GCATTGGGCACG
back to top