mRNA_H-paniculata_contig25443.6933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA) HSP 1 Score: 82.8 bits (203), Expect = 1.580e-17 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 16 HWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQ 345
HW+ A + E + L G W V P+N+ V+ +YK K +DGKV +YK RLVA G + + + E SPV + R++LSLAA+ W+LR +D + A+L + +
Sbjct: 64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNAFLHGELQE 173
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL) HSP 1 Score: 86.7 bits (213), Expect = 2.060e-17 Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 4 PEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASID 342
P+W HWQ A E+ L G WT V RP + VV + + K G++EKYK RLVA G +++ + + E +P AS R++L++AA DW++ DF AYL +D
Sbjct: 1072 PDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELD 1184
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: UPI000CED7874 (uncharacterized protein LOC112098012 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED7874) HSP 1 Score: 81.6 bits (200), Expect = 2.530e-17 Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 19 WQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
W K E LI NG W+ V R +K VV +Y+ K DG V KYK RLVA G ++I ++ E SPV A+ R++LSLA + W++R VD A+L + +E+
Sbjct: 36 WFTTMKKEYAALIQNGTWSLVPRIADKRVVGNKWVYRAKYNTDGSVAKYKARLVAKGFQQIMGVNCFETFSPVIKPATVRVILSLAVMNQWKIRQVDVNNAFLNGELTEEV 146
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY) HSP 1 Score: 84.7 bits (208), Expect = 9.730e-17 Identity = 41/117 (35.04%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 4 PEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKL-VVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
P+W WQ A E++ L+ N WT VERP + + VV ++ + K G+++KYK RLVA G ++ + + E +PV +S R++L++AA +W+++ DF AYL + +D+++
Sbjct: 1164 PDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLDEDV 1280
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 84.3 bits (207), Expect = 1.320e-16 Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 13 EHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
E W+ A EM L +N W V+ PK K VV ++ K+G DGK+++YK RLVA G + I ++E +PV S R+++SLAA DW+L +D + A+L +++E+
Sbjct: 862 EKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEV 974
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD) HSP 1 Score: 83.2 bits (204), Expect = 3.070e-16 Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query: 16 HWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYL 327
+W A E LI G W V RPKN ++R M LYK K +G++ +YK RLVA+GN ++ + E SPV A+ R +L +A DW LR +D + A+L
Sbjct: 419 NWNPAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVLHVATAYDWPLRQLDVKNAFL 522
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL) HSP 1 Score: 82.8 bits (203), Expect = 4.460e-16 Identity = 39/117 (33.33%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 1 SPEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
S E E W +A E Q LIDN W V+ P ++ ++ ++KRK+ DGKV+++K RLVA G + + F + +PV ++ R++L++A + +++H+D + AYL ++++E+
Sbjct: 359 SEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAPVAMHSTFRLLLTVAGYRKMQVKHLDVKSAYLYGTLEEEV 475
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A8H8JF23_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JF23_9AGAM) HSP 1 Score: 82.8 bits (203), Expect = 4.590e-16 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 19 WQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
W A +EM+ + + VWT+V+RP NK VV+ ++ K G DG++ +YK RLVA G + + + E SSPV AA S R +LS+ A + EL +D + A+L +D+EI
Sbjct: 929 WLAAMLLEMKSIEQHKVWTRVDRPTNKNVVKCRWVFDYKRGPDGEILRYKARLVAKGFSQRPGVDYTEISSPVAAADSLRTLLSIVAALELELLQIDVKTAFLHGELDEEI 1039
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: UPI000D630AD2 (probable LRR receptor-like serine/threonine-protein kinase At3g47570 n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI000D630AD2) HSP 1 Score: 82.8 bits (203), Expect = 4.610e-16 Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 1
Query: 16 HWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
+W A K E LI+N W+ V R +N+ VV +Y+ K DG V KYK RLVA G ++I+ +++ + SPV A+ R++LSLA + W +R VD A+L + +E+
Sbjct: 22 NWFTAMKNEYDALIENRTWSLVRRTENQKVVGNKWVYRIKYNTDGSVAKYKARLVAKGFQQIEGVNYFDTFSPVIKPATVRVVLSLAVMNQWIVRQVDVNNAFLNGELSEEV 133
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A2U1P808_ARTAN (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P808_ARTAN) HSP 1 Score: 82.4 bits (202), Expect = 6.270e-16 Identity = 41/113 (36.28%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 16 HWQRAEKVEMQGLIDNGVWTQVER-PKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
HW++A +E+ L +NG W +V P NK + ++K K+ DG VE+YK RLV GNR+ K ++E +PV + R +L++AA++ WEL +D A+L + +E+
Sbjct: 945 HWRKAMDLELYALEENGTWEEVTTLPPNKKAIGCHWIFKIKLKADGSVERYKARLVIQGNRQRKGEDYEETFAPVAKMVTVRALLAVAALKGWELCQMDVSNAFLHGDLFEEV 1057 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig25443.6933.1 >prot_H-paniculata_contig25443.6933.1 ID=prot_H-paniculata_contig25443.6933.1|Name=mRNA_H-paniculata_contig25443.6933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp SPEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGback to top mRNA from alignment at H-paniculata_contig25443:3274..3624+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig25443.6933.1 ID=mRNA_H-paniculata_contig25443.6933.1|Name=mRNA_H-paniculata_contig25443.6933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig25443:3274..3624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig25443:3274..3624+ >mRNA_H-paniculata_contig25443.6933.1 ID=mRNA_H-paniculata_contig25443.6933.1|Name=mRNA_H-paniculata_contig25443.6933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig25443:3274..3624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |