mRNA_H-paniculata_contig25443.6933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25443.6933.1
Unique NamemRNA_H-paniculata_contig25443.6933.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 82.8 bits (203), Expect = 1.580e-17
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   16 HWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQ 345
            HW+ A + E + L   G W  V  P+N+ V+    +YK K  +DGKV +YK RLVA G  +   + + E  SPV    + R++LSLAA+  W+LR +D + A+L   + +
Sbjct:   64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLDVKNAFLHGELQE 173          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 86.7 bits (213), Expect = 2.060e-17
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    4 PEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASID 342
            P+W HWQ A   E+  L   G WT V RP  + VV    + + K    G++EKYK RLVA G  +++ + + E  +P    AS R++L++AA  DW++   DF  AYL   +D
Sbjct: 1072 PDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELD 1184          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: UPI000CED7874 (uncharacterized protein LOC112098012 n=1 Tax=Citrus clementina TaxID=85681 RepID=UPI000CED7874)

HSP 1 Score: 81.6 bits (200), Expect = 2.530e-17
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   19 WQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
            W    K E   LI NG W+ V R  +K VV    +Y+ K   DG V KYK RLVA G ++I  ++  E  SPV   A+ R++LSLA +  W++R VD   A+L   + +E+
Sbjct:   36 WFTTMKKEYAALIQNGTWSLVPRIADKRVVGNKWVYRAKYNTDGSVAKYKARLVAKGFQQIMGVNCFETFSPVIKPATVRVILSLAVMNQWKIRQVDVNNAFLNGELTEEV 146          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY)

HSP 1 Score: 84.7 bits (208), Expect = 9.730e-17
Identity = 41/117 (35.04%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 PEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKL-VVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
            P+W  WQ A   E++ L+ N  WT VERP + + VV   ++ + K    G+++KYK RLVA G  ++  + + E  +PV   +S R++L++AA  +W+++  DF  AYL + +D+++
Sbjct: 1164 PDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLDEDV 1280          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 84.3 bits (207), Expect = 1.320e-16
Identity = 43/113 (38.05%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   13 EHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
            E W+ A   EM  L +N  W  V+ PK K VV    ++  K+G DGK+++YK RLVA G  +   I ++E  +PV    S R+++SLAA  DW+L  +D + A+L   +++E+
Sbjct:  862 EKWRAAVLEEMAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEV 974          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 83.2 bits (204), Expect = 3.070e-16
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   16 HWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYL 327
            +W  A   E   LI  G W  V RPKN  ++R M LYK K   +G++ +YK RLVA+GN ++  +   E  SPV   A+ R +L +A   DW LR +D + A+L
Sbjct:  419 NWNPAMGEEYSTLIKMGTWCLVPRPKNTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVLHVATAYDWPLRQLDVKNAFL 522          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL)

HSP 1 Score: 82.8 bits (203), Expect = 4.460e-16
Identity = 39/117 (33.33%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 SPEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
            S E E W +A   E Q LIDN  W  V+ P ++ ++    ++KRK+  DGKV+++K RLVA G  +   + F +  +PV   ++ R++L++A  +  +++H+D + AYL  ++++E+
Sbjct:  359 SEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQRVGVDFDDSFAPVAMHSTFRLLLTVAGYRKMQVKHLDVKSAYLYGTLEEEV 475          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A8H8JF23_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JF23_9AGAM)

HSP 1 Score: 82.8 bits (203), Expect = 4.590e-16
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   19 WQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
            W  A  +EM+ +  + VWT+V+RP NK VV+   ++  K G DG++ +YK RLVA G  +   + + E SSPV AA S R +LS+ A  + EL  +D + A+L   +D+EI
Sbjct:  929 WLAAMLLEMKSIEQHKVWTRVDRPTNKNVVKCRWVFDYKRGPDGEILRYKARLVAKGFSQRPGVDYTEISSPVAAADSLRTLLSIVAALELELLQIDVKTAFLHGELDEEI 1039          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: UPI000D630AD2 (probable LRR receptor-like serine/threonine-protein kinase At3g47570 n=1 Tax=Citrus sinensis TaxID=2711 RepID=UPI000D630AD2)

HSP 1 Score: 82.8 bits (203), Expect = 4.610e-16
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = 1
Query:   16 HWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
            +W  A K E   LI+N  W+ V R +N+ VV    +Y+ K   DG V KYK RLVA G ++I+ +++ +  SPV   A+ R++LSLA +  W +R VD   A+L   + +E+
Sbjct:   22 NWFTAMKNEYDALIENRTWSLVRRTENQKVVGNKWVYRIKYNTDGSVAKYKARLVAKGFQQIEGVNYFDTFSPVIKPATVRVVLSLAVMNQWIVRQVDVNNAFLNGELSEEV 133          
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Match: A0A2U1P808_ARTAN (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P808_ARTAN)

HSP 1 Score: 82.4 bits (202), Expect = 6.270e-16
Identity = 41/113 (36.28%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   16 HWQRAEKVEMQGLIDNGVWTQVER-PKNKLVVRKMMLYKRKIGEDGKVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELRHVDFEQAYLQASIDQEI 351
            HW++A  +E+  L +NG W +V   P NK  +    ++K K+  DG VE+YK RLV  GNR+ K   ++E  +PV    + R +L++AA++ WEL  +D   A+L   + +E+
Sbjct:  945 HWRKAMDLELYALEENGTWEEVTTLPPNKKAIGCHWIFKIKLKADGSVERYKARLVIQGNRQRKGEDYEETFAPVAKMVTVRALLAVAALKGWELCQMDVSNAFLHGDLFEEV 1057          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25443.6933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A540NMU0_MALBA1.580e-1737.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A146H565_MYCCL2.060e-1738.05Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
UPI000CED78742.530e-1739.64uncharacterized protein LOC112098012 n=1 Tax=Citru... [more]
A0A4S4M1W0_9APHY9.730e-1735.04Uncharacterized protein (Fragment) n=1 Tax=Antrodi... [more]
A0A151T5R4_CAJCA1.320e-1638.05Retrovirus-related Pol polyprotein from transposon... [more]
UPI00090104FD3.070e-1640.38uncharacterized protein LOC104779870 isoform X1 n=... [more]
A0A182HAC3_AEDAL4.460e-1633.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H8JF23_9AGAM4.590e-1640.54Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]
UPI000D630AD24.610e-1638.39probable LRR receptor-like serine/threonine-protei... [more]
A0A2U1P808_ARTAN6.270e-1636.28Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25443contigH-paniculata_contig25443:3274..3624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929751.2112896-CDS-H-paniculata_contig25443:3273..36241622929751.2112896-CDS-H-paniculata_contig25443:3273..3624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25443 3274..3624 +
1691480995.6454837-CDS-H-paniculata_contig25443:3273..36241691480995.6454837-CDS-H-paniculata_contig25443:3273..3624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25443 3274..3624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25443.6933.1prot_H-paniculata_contig25443.6933.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25443 3274..3624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25443.6933.1

>prot_H-paniculata_contig25443.6933.1 ID=prot_H-paniculata_contig25443.6933.1|Name=mRNA_H-paniculata_contig25443.6933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
SPEWEHWQRAEKVEMQGLIDNGVWTQVERPKNKLVVRKMMLYKRKIGEDG
KVEKYKCRLVADGNRRIKDIHFQEDSSPVPAAASTRMMLSLAAIQDWELR
HVDFEQAYLQASIDQEI
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mRNA from alignment at H-paniculata_contig25443:3274..3624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25443.6933.1 ID=mRNA_H-paniculata_contig25443.6933.1|Name=mRNA_H-paniculata_contig25443.6933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig25443:3274..3624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCGGAGTGGGAACACTGGCAAAGAGCGGAGAAAGTCGAAATGCAAGG CCTTATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCCGAAGAACAAGC TGGTCGTGAGAAAGATGATGCTCTACAAAAGGAAAATCGGCGAGGACGGC AAAGTGGAGAAATACAAGTGCCGCCTGGTCGCCGACGGGAACCGTCGGAT CAAGGACATCCACTTCCAGGAAGATTCGTCCCCTGTACCCGCAGCGGCTA GCACAAGAATGATGTTGTCGCTTGCGGCAATCCAAGACTGGGAGCTTCGG CACGTCGACTTTGAACAAGCGTATCTGCAGGCGTCCATCGACCAGGAGAT T
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Coding sequence (CDS) from alignment at H-paniculata_contig25443:3274..3624+

>mRNA_H-paniculata_contig25443.6933.1 ID=mRNA_H-paniculata_contig25443.6933.1|Name=mRNA_H-paniculata_contig25443.6933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig25443:3274..3624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCGGAGTGGGAACACTGGCAAAGAGCGGAGAAAGTCGAAATGCAAGG
CCTTATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCCGAAGAACAAGC
TGGTCGTGAGAAAGATGATGCTCTACAAAAGGAAAATCGGCGAGGACGGC
AAAGTGGAGAAATACAAGTGCCGCCTGGTCGCCGACGGGAACCGTCGGAT
CAAGGACATCCACTTCCAGGAAGATTCGTCCCCTGTACCCGCAGCGGCTA
GCACAAGAATGATGTTGTCGCTTGCGGCAATCCAAGACTGGGAGCTTCGG
CACGTCGACTTTGAACAAGCGTATCTGCAGGCGTCCATCGACCAGGAGAT
TTCGCCGGAGTGGGAACACTGGCAAAGAGCGGAGAAAGTCGAAATGCAAG
GCCTTATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCCGAAGAACAAG
CTGGTCGTGAGAAAGATGATGCTCTACAAAAGGAAAATCGGCGAGGACGG
CAAAGTGGAGAAATACAAGTGCCGCCTGGTCGCCGACGGGAACCGTCGGA
TCAAGGACATCCACTTCCAGGAAGATTCGTCCCCTGTACCCGCAGCGGCT
AGCACAAGAATGATGTTGTCGCTTGCGGCAATCCAAGACTGGGAGCTTCG
GCACGTCGACTTTGAACAAGCGTATCTGCAGGCGTCCATCGACCAGGAGA
TT
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