mRNA_H-paniculata_contig25367.6906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25367.6906.1
Unique NamemRNA_H-paniculata_contig25367.6906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A0J7K416_LASNI (Lectin receptor kinase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K416_LASNI)

HSP 1 Score: 84.7 bits (208), Expect = 2.040e-17
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   28 WHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIA 282
            W EA+  E + +E    WT V N+ KG   +SA+W+F  K+DE+GNV +  ARLVARG+SQ+  +D+ E FAP V   +V+ ++A
Sbjct:  189 WKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLA 273          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A0J7KM48_LASNI (Integrase catalytic domain-containing protein n=2 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KM48_LASNI)

HSP 1 Score: 84.7 bits (208), Expect = 4.220e-17
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   28 WHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIA 282
            W EA+  E + +E    WT V N+ KG   +SA+W+F  K+DE+GNV +  ARLVARG+SQ+  +D+ E FAP V   +V+ ++A
Sbjct:  564 WKEAINEELDAMEKNSTWTVVKNLPKGRRPISAKWIFKKKLDEEGNVVRYKARLVARGYSQREGIDYEETFAPVVRYETVRTLLA 648          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 80.1 bits (196), Expect = 1.820e-15
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   28 WHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVI 279
            W EA++VE + L+N   WT VD +      ++A+WVF  K D  GNV+K  ARLVARGF+Q H +D+ + + P V+ +S+++VI
Sbjct:  878 WEEAIKVELDSLDNTGTWTIVD-LPAARKAITAKWVFKTKQDADGNVSKYKARLVARGFTQMHGIDYHDTYLPVVSMTSLRLVI 960          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A6H5L9Z3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Z3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.340e-15
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   34 EAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIAVA 288
            EA+R EFEG    + +++VD   +GST VS++W F+WKI+++G + K   RLVARGFSQ  NVD     +P  +++S+K++ AVA
Sbjct: 1007 EAMREEFEGHLGTRTFSFVDGTPEGSTPVSSKWCFSWKINKEGKIEKFKERLVARGFSQIPNVDHFHSSSPCPSSASIKLMFAVA 1091          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: Q69FA4_PHAVU (Gag-pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=Q69FA4_PHAVU)

HSP 1 Score: 76.6 bits (187), Expect = 2.990e-14
Identity = 33/87 (37.93%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   28 WHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIAVA 288
            W +A++ E E ++    WT VD + KG+  +  +W+F  K    G++ K  ARLVA+GF+Q+HN+D+ + FAP    SS+++++A+A
Sbjct:  784 WDKAIKTELESIKKNNTWTLVD-LPKGAKPIGCKWIFKKKYHPDGSIEKYKARLVAKGFTQKHNIDYFDTFAPVTRISSIRVLLALA 869          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A6H5JNP9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.190e-13
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   19 KTMWHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIAVA 288
            K  W  A++ E +G +    +T V  + +G   + ++WVF+WK +E+G +    AR+VARGFSQ H +DF   F+   +A+S+K VIAVA
Sbjct:  120 KVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIHGIDFHHSFSACPSAASIKTVIAVA 209          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A535F797_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F797_9CHLR)

HSP 1 Score: 74.7 bits (182), Expect = 1.420e-13
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   19 KTMWHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIAVA 288
            K  W  A+  E + +     W  VD   KG  +VS++WVF  K    G + +  ARLVARGFSQQH +D+ E FAP V   S+++++A+A
Sbjct:  827 KRQWSAAINEELQSIATNTVWELVDTP-KGVNIVSSKWVFKLKCLPDGRIDRYKARLVARGFSQQHGIDYYETFAPVVRLESLRILLAIA 915          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: UPI001C3499C3 (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C3499C3)

HSP 1 Score: 73.9 bits (180), Expect = 2.520e-13
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   19 KTMWHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIA 282
            K  W  AV+ E +  E+  AW  VD  +KG TVV  +WV   K+D   N+ +  ARLVA+G+ Q+ NVD++E F+P V  S+++++ A
Sbjct:  160 KENWLLAVKEELQSFEDSNAWELVDKPKKGETVVKCKWVLRKKLDNDNNI-RYRARLVAKGYMQKQNVDYVETFSPVVRHSTLRLLFA 246          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A438JE14_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JE14_VITVI)

HSP 1 Score: 73.2 bits (178), Expect = 4.940e-13
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 KKLTHKTMWHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIAVA 288
            ++    + W  A+ +E E +E    W   D + +G   +  +WVF  K++E G V K  ARL+A+G++QQH +D+ EVFAP     +++MVIA+A
Sbjct:  778 EEAVQSSKWRAAMDLEIEAIERNGTWELTD-LPEGVKKIGVKWVFKTKLNENGKVDKCKARLLAKGYAQQHGIDYTEVFAPVAKWDTIRMVIALA 871          
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY)

HSP 1 Score: 73.2 bits (178), Expect = 4.960e-13
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    4 KKLTHKTMWHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTKPNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIAVA 288
            KK      W  A++ E + L+    W  ++    G+ VV ++WV   K D  G + K  ARLVARGF+Q H VD+ E FAP    SS++ + A+A
Sbjct: 1018 KKRPDWPKWQAAIQAELDSLKANGTWELIERPTDGTNVVDSKWVLHVKKDSAGEIDKYKARLVARGFTQVHGVDYTETFAPVARLSSIRTIFAIA 1112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25367.6906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7K416_LASNI2.040e-1744.71Lectin receptor kinase n=1 Tax=Lasius niger TaxID=... [more]
A0A0J7KM48_LASNI4.220e-1744.71Integrase catalytic domain-containing protein n=2 ... [more]
A0A5C3EBA0_9BASI1.820e-1544.05Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
A0A6H5L9Z3_9PHAE6.340e-1545.88CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
Q69FA4_PHAVU2.990e-1437.93Gag-pol polyprotein n=1 Tax=Phaseolus vulgaris Tax... [more]
A0A6H5JNP9_9PHAE1.190e-1340.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A535F797_9CHLR1.420e-1341.11DDE-type integrase/transposase/recombinase n=1 Tax... [more]
UPI001C3499C32.520e-1340.91Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A438JE14_VITVI4.940e-1336.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8SFR3_9APHY4.960e-1337.89Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25367contigH-paniculata_contig25367:12..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.3
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog15368.BRADI0007S00200.2
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INI6@38820,3M96M@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size288
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.7637515-CDS-H-paniculata_contig25367:11..2751622929747.7637515-CDS-H-paniculata_contig25367:11..275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25367 12..275 -
1691480994.0746136-CDS-H-paniculata_contig25367:11..2751691480994.0746136-CDS-H-paniculata_contig25367:11..275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25367 12..275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.7783897-UTR-H-paniculata_contig25367:275..2991622929747.7783897-UTR-H-paniculata_contig25367:275..299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25367 276..299 -
1691480994.08369-UTR-H-paniculata_contig25367:275..2991691480994.08369-UTR-H-paniculata_contig25367:275..299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25367 276..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25367.6906.1prot_H-paniculata_contig25367.6906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25367 12..275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25367.6906.1

>prot_H-paniculata_contig25367.6906.1 ID=prot_H-paniculata_contig25367.6906.1|Name=mRNA_H-paniculata_contig25367.6906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MWHEAVRVEFEGLENLKAWTYVDNVRKGSTVVSARWVFAWKIDEQGNVTK
PNARLVARGFSQQHNVDFLEVFAPTVAASSVKMVIAVA
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mRNA from alignment at H-paniculata_contig25367:12..299-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25367.6906.1 ID=mRNA_H-paniculata_contig25367.6906.1|Name=mRNA_H-paniculata_contig25367.6906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig25367:12..299- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAGAAGCTGACACATAAAACGATGTGGCATGAGGCAGTCAGAGTAGA GTTTGAGGGCTTGGAAAATCTCAAAGCTTGGACTTATGTAGACAATGTGC GGAAAGGTTCCACTGTTGTCAGTGCGAGATGGGTATTTGCATGGAAAATT GATGAGCAGGGGAACGTTACAAAGCCAAACGCAAGGCTTGTAGCTCGAGG GTTTAGCCAGCAACACAACGTTGATTTTCTCGAAGTGTTTGCTCCTACGG TAGCCGCTTCCAGTGTAAAGATGGTAATTGCTGTTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig25367:12..299-

>mRNA_H-paniculata_contig25367.6906.1 ID=mRNA_H-paniculata_contig25367.6906.1|Name=mRNA_H-paniculata_contig25367.6906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig25367:12..299- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGCATGAGGCAGTCAGAGTAGAGTTTGAGGGCTTGGAAAATCTCAA
AGCTTGGACTTATGTAGACAATGTGCGGAAAGGTTCCACTGTTGTCAGTG
CGAGATGGGTATTTGCATGGAAAATTGATGAGCAGGGGAACGTTACAAAG
CCAAACGCAAGGCTTGTAGCTCGAGGGTTTAGCCAGCAACACAACGTTGA
TTTTCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTCCAGTGTAAAGATGG
TAATTGCTGTTGCTATGTGGCATGAGGCAGTCAGAGTAGAGTTTGAGGGC
TTGGAAAATCTCAAAGCTTGGACTTATGTAGACAATGTGCGGAAAGGTTC
CACTGTTGTCAGTGCGAGATGGGTATTTGCATGGAAAATTGATGAGCAGG
GGAACGTTACAAAGCCAAACGCAAGGCTTGTAGCTCGAGGGTTTAGCCAG
CAACACAACGTTGATTTTCTCGAAGTGTTTGCTCCTACGGTAGCCGCTTC
CAGTGTAAAGATGGTAATTGCTGTTGCT
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